These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8782#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1059 fasta sequence [ATGATTCAGACAACTGAGGATTTGTGTCGCAAACTCCAGAATCTTGATAATGAATGGAACAAGAAAAATCACAATGTTGAAGATTGCCTAAAGAAAGTCGAAGAAATAACATCTGGATTAACTAGATGTGCATTCCTCCCGAAAAATGAATCAGAAGCTTCTCGACGTGAGCTTCTTGTTGCTAGAAGCACACTGGAGATAGCAGCTATGCTGTGTTCTGAGAAGCAGGATATTCCTGCTTTCGAACATTATATGTCTCAGTTAAAATGCTACTACTATGACTATAAAGGAAATCTTCCAGATTCGCCTTATAAGTATGAACTTCTTGGGCTAAATCTACTTGTTCTTGTTGTCGCAGCGTAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCAGTGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTTAATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATTTTTGAACGCAACCAGGTAAAATGTGGACACTAATTTACGTTTTCCTTAGGGAGGAAGTTGCCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCANAGATGCTACTCCTATGTTGTTTTTTAGTTCTAACAACGAAACANAATTATTTGCTGAGAAGAGAGCATGGAATTACTGGATGGTACTTTTATTTTCCCCAAGCATAAAAAACGGGCGGACGATGCCATCCCATCCGCCCACGTGACACGAGTAATGCTTGACTATACAAAAGAGCTGGACCAAATAATTTGAAAAATAACAAGCCAGGATTATTACTTGTTGTATCTATCCTTCTGAACGAATTGAATTTTGCATGTATTTTGTTACATTATTAATGAAGTCAGTGCATTGCACTGCACAACGTTAAAGCGTATTGCGAACAAGTAACGCTGCTCGTTTTTTGTATTTCGAGTGGCCACTTGTAGGAATTCTCGTGAATATACTCAATTTCTTCATGAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CD133175 [ATGATTCAGACAACTGAGGATTTGTGTCGCAAACTCCAGAATCTTGATAATGAATGGAACAAGAAAAATCACAATGTTGAAGATTGCCTAAAGAAAGTCGAAGAAATAACATCTGGATTAACTAGATGTGCATTCCTCCCGAAAAATGAATCAGAAGCTTCTCGACGTGAGCTTCTTGTTGCTAGAAGCACACTGGAGATAGCAGCTATGCTGTGTTCTGAGAAGCAGGATATTCCTGCTTTCGAACATTATATGTCTCAGTTAAAATGCTACTACTATGACTATAAAGGAAATCTTCCAGATTCGCCTTATAAGTATGAACTTCTTGGGCTAAATCTACTTGTTCTTGTT ] [+] EMBL CD079200 [ CGAAGAAATAACATCTGGATTAACTAGATGTGCATTCCTCCCGAAAAATGAATCAGAAGCTTCTCGAC TTTGTATCTT AAG GAAGCACACTGGAGATAGCAGCTATGCTGTGTTCTGAGAAGCAGGATATTCCTGCTTTCGAACATTATATGTCTCAGTTAAAATGCTACTACTATGACTATAAAGGAAATCTTCCAGATTCGCCTTATAAGTATGAACTTCTTGGGCTAAATCTAC TGTTCTTGTTGTCGCAGCGTAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCAGTGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTTAATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATTTTTGAACGCAACCAGGTAAAATGTGGACACTAATTTACGTTTTCCTTAGGGAGGAAGTTGCCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCANAGATGCTACTCCTATGTTGTTTTTTAGTTCTAACAACGAAACANAATTATTTGCTGAGAAGAGAGCA ] [-] EMBL AI395723 [ nccAGGGAGGAA TTGCCTCTTGCATAGAGCATG GTACGAAAC TTGTCACTCAAAGATGCTACTCCTATGTT TTTTTTAGTTCTAACAACGAAACA AATTATTTGCTGAGAAGAGAGCATGGAATTACTGGATGGTACTTTTATTTTCCCCAAGCATAAAAAACGGGCGGACGATGCCATCCCATCCGCCCACGTGACACGAGTAATGCTTGACTATACAAAAGAGCTGGACCAAATAATTTGAAAAATAACAAGCCAGGATTATTACTTGTTGTATCTATCCTTCTGAACGAATTGAATTTTGCATGTATTTTGTTACATTATTAATGAAGTCAGTGCATTGCACTGCACAACGTTAAAGCGTATTGCGAACAAGTAACGCTGCTCGTTTTTTGTATTTCGAGTGGCCACTTGTAGGAATTCTCGTGAATATACTCAATTTCTTCATGAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8782#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 461 fasta sequence [TACTGTTCTTGTTGTCGCAGCGTAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCAGTGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTT-AATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATTTTTGAACGCAACCAGGGAGGAAGTTGCCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCAAAGATGCTACTCCTATGTTGTTTTTTAGTTCTAACAACGAAACAAAATTATTTGCTGAGAAGAGAGCATGGAATTTACTGGATGGTACTTTTATTTTCCCCAAGCATAAAAACGGGCGGACGATGCCATCCCATCCGCCCACGTGACACGAGTAATGCTTGACTATACAAAAGAGCTGGNACCAAATATGTGAA] [+] EMBL CD133050 [TACTGTTCTTGTTGTCGCAGCGTAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCAGTGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTT AATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATTTTTGAACGCAACCAGGGAGGAAGTTGCCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCAAAGATGCTACTCCTATGTTGTTTTTTAGTTCTAACAACGAAACAAAATTATTTGCTGAGAAGAGAGCATGGAATTTACTGGATGGTACTTTTATTTTCCCCAAGCATAAAAACGGGCGGACGATGCCATCCCATCCGCCCACGTGACACGAGTAATGCTTGACTATACAAAAGAGCTGGNACCAAATATGTGAA] [+] EMBL CD195527 [ TGTTCTTGTTGTCGCAGCGTAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCGGTGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTT AATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATTTTTGAACGCAACCAAGGAGGAAGTTGCCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCAAAGATGCTACTCCTATGTTGTTTTTTAGTTCTAACAACGAAAC ] [-] EMBL CD111666 [ GGCTCACAAATGAAGAAATTACTTCCAGTGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTT AATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATTTTT ] [-] EMBL CD111662 [ ATCAATCACCCAGTCTCTATGGAGCAGTACTTAAATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATTTTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8782#0 ATGATTCAGACAACTGAGGATTTGTGTCGCAAACTCCAGAATCTTGATAATGAATGGAAC 60 consensus_8782#1 ------------------------------------------------------------ consensus_8782#0 AAGAAAAATCACAATGTTGAAGATTGCCTAAAGAAAGTCGAAGAAATAACATCTGGATTA 120 consensus_8782#1 ------------------------------------------------------------ consensus_8782#0 ACTAGATGTGCATTCCTCCCGAAAAATGAATCAGAAGCTTCTCGACGTGAGCTTCTTGTT 180 consensus_8782#1 ------------------------------------------------------------ consensus_8782#0 GCTAGAAGCACACTGGAGATAGCAGCTATGCTGTGTTCTGAGAAGCAGGATATTCCTGCT 240 consensus_8782#1 ------------------------------------------------------------ consensus_8782#0 TTCGAACATTATATGTCTCAGTTAAAATGCTACTACTATGACTATAAAGGAAATCTTCCA 300 consensus_8782#1 ------------------------------------------------------------ consensus_8782#0 GATTCGCCTTATAAGTATGAACTTCTTGGGCTAAATCTACTTGTTCTTGTTGTCGCAGCG 360 consensus_8782#1 -------------------------------------TACT-GTTCTTGTTGTCGCAGCG 22 **** ****************** consensus_8782#0 TAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCAG 420 consensus_8782#1 TAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCAG 82 ************************************************************ consensus_8782#0 TGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTTAATGGAAGGCAACTTTCACAA 480 consensus_8782#1 TGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTTAATGGAAGGCAACTTTCACAA 142 ************************************************************ consensus_8782#0 GGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATT 540 consensus_8782#1 GGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATT 202 ************************************************************ consensus_8782#0 TTTGAACGCAACCAGGTAAAATGTGGACACTAATTTACGTTTTCCTTAGGGAGGAAGTTG 600 consensus_8782#1 TTTGAACGCAACCAGG----------------------------------GAGGAAGTTG 228 **************** ********** consensus_8782#0 CCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCANAGATGCTACTCCTATGTTGT 660 consensus_8782#1 CCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCAAAGATGCTACTCCTATGTTGT 288 *************************************** ******************** consensus_8782#0 TTTTTAGTTCTAACAACGAAACANAATTATTTGCTGAGAAGAGAGCATGGAATT-ACTGG 719 consensus_8782#1 TTTTTAGTTCTAACAACGAAACAAAATTATTTGCTGAGAAGAGAGCATGGAATTTACTGG 348 *********************** ****************************** ***** consensus_8782#0 ATGGTACTTTTATTTTCCCCAAGCATAAAAAACGGGCGGACGATGCCATCCCATCCGCCC 779 consensus_8782#1 ATGGTACTTTTATTTTCCCCAAGCATAAAAA-CGGGCGGACGATGCCATCCCATCCGCCC 407 ******************************* **************************** consensus_8782#0 ACGTGACACGAGTAATGCTTGACTATACAAAAGAGCTGGACCAAATAATTTGAAAAATAA 839 consensus_8782#1 ACGTGACACGAGTAATGCTTGACTATACAAAAGAGCTGGNACCAAATATGTGAA------ 461 *************************************** * ** ** **** consensus_8782#0 CAAGCCAGGATTATTACTTGTTGTATCTATCCTTCTGAACGAATTGAATTTTGCATGTAT 899 consensus_8782#1 ------------------------------------------------------------ consensus_8782#0 TTTGTTACATTATTAATGAAGTCAGTGCATTGCACTGCACAACGTTAAAGCGTATTGCGA 959 consensus_8782#1 ------------------------------------------------------------ consensus_8782#0 ACAAGTAACGCTGCTCGTTTTTTGTATTTCGAGTGGCCACTTGTAGGAATTCTCGTGAAT 1019 consensus_8782#1 ------------------------------------------------------------ consensus_8782#0 ATACTCAATTTCTTCATGAAAAAAAAAAAAAAAAAAAAAA 1059 consensus_8782#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||