|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8782#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1059 fasta sequence
[ATGATTCAGACAACTGAGGATTTGTGTCGCAAACTCCAGAATCTTGATAATGAATGGAACAAGAAAAATCACAATGTTGAAGATTGCCTAAAGAAAGTCGAAGAAATAACATCTGGATTAACTAGATGTGCATTCCTCCCGAAAAATGAATCAGAAGCTTCTCGACGTGAGCTTCTTGTTGCTAGAAGCACACTGGAGATAGCAGCTATGCTGTGTTCTGAGAAGCAGGATATTCCTGCTTTCGAACATTATATGTCTCAGTTAAAATGCTACTACTATGACTATAAAGGAAATCTTCCAGATTCGCCTTATAAGTATGAACTTCTTGGGCTAAATCTACTTGTTCTTGTTGTCGCAGCGTAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCAGTGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTTAATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATTTTTGAACGCAACCAGGTAAAATGTGGACACTAATTTACGTTTTCCTTAGGGAGGAAGTTGCCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCANAGATGCTACTCCTATGTTGTTTTTTAGTTCTAACAACGAAACANAATTATTTGCTGAGAAGAGAGCATGGAATTACTGGATGGTACTTTTATTTTCCCCAAGCATAAAAAACGGGCGGACGATGCCATCCCATCCGCCCACGTGACACGAGTAATGCTTGACTATACAAAAGAGCTGGACCAAATAATTTGAAAAATAACAAGCCAGGATTATTACTTGTTGTATCTATCCTTCTGAACGAATTGAATTTTGCATGTATTTTGTTACATTATTAATGAAGTCAGTGCATTGCACTGCACAACGTTAAAGCGTATTGCGAACAAGTAACGCTGCTCGTTTTTTGTATTTCGAGTGGCCACTTGTAGGAATTCTCGTGAATATACTCAATTTCTTCATGAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CD133175 [ATGATTCAGACAACTGAGGATTTGTGTCGCAAACTCCAGAATCTTGATAATGAATGGAACAAGAAAAATCACAATGTTGAAGATTGCCTAAAGAAAGTCGAAGAAATAACATCTGGATTAACTAGATGTGCATTCCTCCCGAAAAATGAATCAGAAGCTTCTCGACGTGAGCTTCTTGTTGCTAGAAGCACACTGGAGATAGCAGCTATGCTGTGTTCTGAGAAGCAGGATATTCCTGCTTTCGAACATTATATGTCTCAGTTAAAATGCTACTACTATGACTATAAAGGAAATCTTCCAGATTCGCCTTATAAGTATGAACTTCTTGGGCTAAATCTACTTGTTCTTGTT ]
[+] EMBL CD079200 [ CGAAGAAATAACATCTGGATTAACTAGATGTGCATTCCTCCCGAAAAATGAATCAGAAGCTTCTCGAC TTTGTATCTT AAG GAAGCACACTGGAGATAGCAGCTATGCTGTGTTCTGAGAAGCAGGATATTCCTGCTTTCGAACATTATATGTCTCAGTTAAAATGCTACTACTATGACTATAAAGGAAATCTTCCAGATTCGCCTTATAAGTATGAACTTCTTGGGCTAAATCTAC TGTTCTTGTTGTCGCAGCGTAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCAGTGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTTAATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATTTTTGAACGCAACCAGGTAAAATGTGGACACTAATTTACGTTTTCCTTAGGGAGGAAGTTGCCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCANAGATGCTACTCCTATGTTGTTTTTTAGTTCTAACAACGAAACANAATTATTTGCTGAGAAGAGAGCA ]
[-] EMBL AI395723 [ nccAGGGAGGAA TTGCCTCTTGCATAGAGCATG GTACGAAAC TTGTCACTCAAAGATGCTACTCCTATGTT TTTTTTAGTTCTAACAACGAAACA AATTATTTGCTGAGAAGAGAGCATGGAATTACTGGATGGTACTTTTATTTTCCCCAAGCATAAAAAACGGGCGGACGATGCCATCCCATCCGCCCACGTGACACGAGTAATGCTTGACTATACAAAAGAGCTGGACCAAATAATTTGAAAAATAACAAGCCAGGATTATTACTTGTTGTATCTATCCTTCTGAACGAATTGAATTTTGCATGTATTTTGTTACATTATTAATGAAGTCAGTGCATTGCACTGCACAACGTTAAAGCGTATTGCGAACAAGTAACGCTGCTCGTTTTTTGTATTTCGAGTGGCCACTTGTAGGAATTCTCGTGAATATACTCAATTTCTTCATGAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_8782#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 461 fasta sequence
[TACTGTTCTTGTTGTCGCAGCGTAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCAGTGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTT-AATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATTTTTGAACGCAACCAGGGAGGAAGTTGCCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCAAAGATGCTACTCCTATGTTGTTTTTTAGTTCTAACAACGAAACAAAATTATTTGCTGAGAAGAGAGCATGGAATTTACTGGATGGTACTTTTATTTTCCCCAAGCATAAAAACGGGCGGACGATGCCATCCCATCCGCCCACGTGACACGAGTAATGCTTGACTATACAAAAGAGCTGGNACCAAATATGTGAA]
[+] EMBL CD133050 [TACTGTTCTTGTTGTCGCAGCGTAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCAGTGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTT AATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATTTTTGAACGCAACCAGGGAGGAAGTTGCCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCAAAGATGCTACTCCTATGTTGTTTTTTAGTTCTAACAACGAAACAAAATTATTTGCTGAGAAGAGAGCATGGAATTTACTGGATGGTACTTTTATTTTCCCCAAGCATAAAAACGGGCGGACGATGCCATCCCATCCGCCCACGTGACACGAGTAATGCTTGACTATACAAAAGAGCTGGNACCAAATATGTGAA]
[+] EMBL CD195527 [ TGTTCTTGTTGTCGCAGCGTAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCGGTGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTT AATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATTTTTGAACGCAACCAAGGAGGAAGTTGCCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCAAAGATGCTACTCCTATGTTGTTTTTTAGTTCTAACAACGAAAC ]
[-] EMBL CD111666 [ GGCTCACAAATGAAGAAATTACTTCCAGTGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTT AATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATTTTT ]
[-] EMBL CD111662 [ ATCAATCACCCAGTCTCTATGGAGCAGTACTTAAATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATTTTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8782#0 ATGATTCAGACAACTGAGGATTTGTGTCGCAAACTCCAGAATCTTGATAATGAATGGAAC 60
consensus_8782#1 ------------------------------------------------------------
consensus_8782#0 AAGAAAAATCACAATGTTGAAGATTGCCTAAAGAAAGTCGAAGAAATAACATCTGGATTA 120
consensus_8782#1 ------------------------------------------------------------
consensus_8782#0 ACTAGATGTGCATTCCTCCCGAAAAATGAATCAGAAGCTTCTCGACGTGAGCTTCTTGTT 180
consensus_8782#1 ------------------------------------------------------------
consensus_8782#0 GCTAGAAGCACACTGGAGATAGCAGCTATGCTGTGTTCTGAGAAGCAGGATATTCCTGCT 240
consensus_8782#1 ------------------------------------------------------------
consensus_8782#0 TTCGAACATTATATGTCTCAGTTAAAATGCTACTACTATGACTATAAAGGAAATCTTCCA 300
consensus_8782#1 ------------------------------------------------------------
consensus_8782#0 GATTCGCCTTATAAGTATGAACTTCTTGGGCTAAATCTACTTGTTCTTGTTGTCGCAGCG 360
consensus_8782#1 -------------------------------------TACT-GTTCTTGTTGTCGCAGCG 22
**** ******************
consensus_8782#0 TAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCAG 420
consensus_8782#1 TAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCAG 82
************************************************************
consensus_8782#0 TGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTTAATGGAAGGCAACTTTCACAA 480
consensus_8782#1 TGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTTAATGGAAGGCAACTTTCACAA 142
************************************************************
consensus_8782#0 GGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATT 540
consensus_8782#1 GGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATT 202
************************************************************
consensus_8782#0 TTTGAACGCAACCAGGTAAAATGTGGACACTAATTTACGTTTTCCTTAGGGAGGAAGTTG 600
consensus_8782#1 TTTGAACGCAACCAGG----------------------------------GAGGAAGTTG 228
**************** **********
consensus_8782#0 CCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCANAGATGCTACTCCTATGTTGT 660
consensus_8782#1 CCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCAAAGATGCTACTCCTATGTTGT 288
*************************************** ********************
consensus_8782#0 TTTTTAGTTCTAACAACGAAACANAATTATTTGCTGAGAAGAGAGCATGGAATT-ACTGG 719
consensus_8782#1 TTTTTAGTTCTAACAACGAAACAAAATTATTTGCTGAGAAGAGAGCATGGAATTTACTGG 348
*********************** ****************************** *****
consensus_8782#0 ATGGTACTTTTATTTTCCCCAAGCATAAAAAACGGGCGGACGATGCCATCCCATCCGCCC 779
consensus_8782#1 ATGGTACTTTTATTTTCCCCAAGCATAAAAA-CGGGCGGACGATGCCATCCCATCCGCCC 407
******************************* ****************************
consensus_8782#0 ACGTGACACGAGTAATGCTTGACTATACAAAAGAGCTGGACCAAATAATTTGAAAAATAA 839
consensus_8782#1 ACGTGACACGAGTAATGCTTGACTATACAAAAGAGCTGGNACCAAATATGTGAA------ 461
*************************************** * ** ** ****
consensus_8782#0 CAAGCCAGGATTATTACTTGTTGTATCTATCCTTCTGAACGAATTGAATTTTGCATGTAT 899
consensus_8782#1 ------------------------------------------------------------
consensus_8782#0 TTTGTTACATTATTAATGAAGTCAGTGCATTGCACTGCACAACGTTAAAGCGTATTGCGA 959
consensus_8782#1 ------------------------------------------------------------
consensus_8782#0 ACAAGTAACGCTGCTCGTTTTTTGTATTTCGAGTGGCCACTTGTAGGAATTCTCGTGAAT 1019
consensus_8782#1 ------------------------------------------------------------
consensus_8782#0 ATACTCAATTTCTTCATGAAAAAAAAAAAAAAAAAAAAAA 1059
consensus_8782#1 ----------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||