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Schistosoma mansoni
cluster # 8782 cluster # 8782       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8782#0 length = 1059 sequences # 3  
consensus_8782#1 length = 461 sequences # 4  

consensusID : consensus_8782#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1059
fasta sequence
                              [ATGATTCAGACAACTGAGGATTTGTGTCGCAAACTCCAGAATCTTGATAATGAATGGAACAAGAAAAATCACAATGTTGAAGATTGCCTAAAGAAAGTCGAAGAAATAACATCTGGATTAACTAGATGTGCATTCCTCCCGAAAAATGAATCAGAAGCTTCTCGACGTGAGCTTCTTGTTGCTAGAAGCACACTGGAGATAGCAGCTATGCTGTGTTCTGAGAAGCAGGATATTCCTGCTTTCGAACATTATATGTCTCAGTTAAAATGCTACTACTATGACTATAAAGGAAATCTTCCAGATTCGCCTTATAAGTATGAACTTCTTGGGCTAAATCTACTTGTTCTTGTTGTCGCAGCGTAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCAGTGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTTAATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATTTTTGAACGCAACCAGGTAAAATGTGGACACTAATTTACGTTTTCCTTAGGGAGGAAGTTGCCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCANAGATGCTACTCCTATGTTGTTTTTTAGTTCTAACAACGAAACANAATTATTTGCTGAGAAGAGAGCATGGAATTACTGGATGGTACTTTTATTTTCCCCAAGCATAAAAAACGGGCGGACGATGCCATCCCATCCGCCCACGTGACACGAGTAATGCTTGACTATACAAAAGAGCTGGACCAAATAATTTGAAAAATAACAAGCCAGGATTATTACTTGTTGTATCTATCCTTCTGAACGAATTGAATTTTGCATGTATTTTGTTACATTATTAATGAAGTCAGTGCATTGCACTGCACAACGTTAAAGCGTATTGCGAACAAGTAACGCTGCTCGTTTTTTGTATTTCGAGTGGCCACTTGTAGGAATTCTCGTGAATATACTCAATTTCTTCATGAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CD133175             [ATGATTCAGACAACTGAGGATTTGTGTCGCAAACTCCAGAATCTTGATAATGAATGGAACAAGAAAAATCACAATGTTGAAGATTGCCTAAAGAAAGTCGAAGAAATAACATCTGGATTAACTAGATGTGCATTCCTCCCGAAAAATGAATCAGAAGCTTCTCGACGTGAGCTTCTTGTTGCTAGAAGCACACTGGAGATAGCAGCTATGCTGTGTTCTGAGAAGCAGGATATTCCTGCTTTCGAACATTATATGTCTCAGTTAAAATGCTACTACTATGACTATAAAGGAAATCTTCCAGATTCGCCTTATAAGTATGAACTTCTTGGGCTAAATCTACTTGTTCTTGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD079200             [                                                                                                  CGAAGAAATAACATCTGGATTAACTAGATGTGCATTCCTCCCGAAAAATGAATCAGAAGCTTCTCGAC TTTGTATCTT AAG   GAAGCACACTGGAGATAGCAGCTATGCTGTGTTCTGAGAAGCAGGATATTCCTGCTTTCGAACATTATATGTCTCAGTTAAAATGCTACTACTATGACTATAAAGGAAATCTTCCAGATTCGCCTTATAAGTATGAACTTCTTGGGCTAAATCTAC TGTTCTTGTTGTCGCAGCGTAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCAGTGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTTAATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATTTTTGAACGCAACCAGGTAAAATGTGGACACTAATTTACGTTTTCCTTAGGGAGGAAGTTGCCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCANAGATGCTACTCCTATGTTGTTTTTTAGTTCTAACAACGAAACANAATTATTTGCTGAGAAGAGAGCA                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL AI395723             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        nccAGGGAGGAA TTGCCTCTTGCATAGAGCATG GTACGAAAC TTGTCACTCAAAGATGCTACTCCTATGTT TTTTTTAGTTCTAACAACGAAACA AATTATTTGCTGAGAAGAGAGCATGGAATTACTGGATGGTACTTTTATTTTCCCCAAGCATAAAAAACGGGCGGACGATGCCATCCCATCCGCCCACGTGACACGAGTAATGCTTGACTATACAAAAGAGCTGGACCAAATAATTTGAAAAATAACAAGCCAGGATTATTACTTGTTGTATCTATCCTTCTGAACGAATTGAATTTTGCATGTATTTTGTTACATTATTAATGAAGTCAGTGCATTGCACTGCACAACGTTAAAGCGTATTGCGAACAAGTAACGCTGCTCGTTTTTTGTATTTCGAGTGGCCACTTGTAGGAATTCTCGTGAATATACTCAATTTCTTCATGAAAAAAAAAAAAAAAAAAAAAA]


>consensus_8782#0 ATGATTCAGACAACTGAGGATTTGTGTCGCAAACTCCAGAATCTTGATAATGAATGGAAC AAGAAAAATCACAATGTTGAAGATTGCCTAAAGAAAGTCGAAGAAATAACATCTGGATTA ACTAGATGTGCATTCCTCCCGAAAAATGAATCAGAAGCTTCTCGACGTGAGCTTCTTGTT GCTAGAAGCACACTGGAGATAGCAGCTATGCTGTGTTCTGAGAAGCAGGATATTCCTGCT TTCGAACATTATATGTCTCAGTTAAAATGCTACTACTATGACTATAAAGGAAATCTTCCA GATTCGCCTTATAAGTATGAACTTCTTGGGCTAAATCTACTTGTTCTTGTTGTCGCAGCG TAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCAG TGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTTAATGGAAGGCAACTTTCACAA GGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATT TTTGAACGCAACCAGGTAAAATGTGGACACTAATTTACGTTTTCCTTAGGGAGGAAGTTG CCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCANAGATGCTACTCCTATGTTGT TTTTTAGTTCTAACAACGAAACANAATTATTTGCTGAGAAGAGAGCATGGAATTACTGGA TGGTACTTTTATTTTCCCCAAGCATAAAAAACGGGCGGACGATGCCATCCCATCCGCCCA CGTGACACGAGTAATGCTTGACTATACAAAAGAGCTGGACCAAATAATTTGAAAAATAAC AAGCCAGGATTATTACTTGTTGTATCTATCCTTCTGAACGAATTGAATTTTGCATGTATT TTGTTACATTATTAATGAAGTCAGTGCATTGCACTGCACAACGTTAAAGCGTATTGCGAA CAAGTAACGCTGCTCGTTTTTTGTATTTCGAGTGGCCACTTGTAGGAATTCTCGTGAATA TACTCAATTTCTTCATGAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_8782#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 461
fasta sequence
                              [TACTGTTCTTGTTGTCGCAGCGTAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCAGTGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTT-AATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATTTTTGAACGCAACCAGGGAGGAAGTTGCCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCAAAGATGCTACTCCTATGTTGTTTTTTAGTTCTAACAACGAAACAAAATTATTTGCTGAGAAGAGAGCATGGAATTTACTGGATGGTACTTTTATTTTCCCCAAGCATAAAAACGGGCGGACGATGCCATCCCATCCGCCCACGTGACACGAGTAATGCTTGACTATACAAAAGAGCTGGNACCAAATATGTGAA]

[+] EMBL CD133050             [TACTGTTCTTGTTGTCGCAGCGTAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCAGTGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTT AATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATTTTTGAACGCAACCAGGGAGGAAGTTGCCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCAAAGATGCTACTCCTATGTTGTTTTTTAGTTCTAACAACGAAACAAAATTATTTGCTGAGAAGAGAGCATGGAATTTACTGGATGGTACTTTTATTTTCCCCAAGCATAAAAACGGGCGGACGATGCCATCCCATCCGCCCACGTGACACGAGTAATGCTTGACTATACAAAAGAGCTGGNACCAAATATGTGAA]
[+] EMBL CD195527             [   TGTTCTTGTTGTCGCAGCGTAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCGGTGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTT AATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATTTTTGAACGCAACCAAGGAGGAAGTTGCCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCAAAGATGCTACTCCTATGTTGTTTTTTAGTTCTAACAACGAAAC                                                                                                                                                       ]
[-] EMBL CD111666             [                                                      GGCTCACAAATGAAGAAATTACTTCCAGTGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTT AATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATTTTT                                                                                                                                                                                                                                                                ]
[-] EMBL CD111662             [                                                                                         ATCAATCACCCAGTCTCTATGGAGCAGTACTTAAATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATTTTT                                                                                                                                                                                                                                                                ]


>consensus_8782#1 TACTGTTCTTGTTGTCGCAGCGTAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCA CAATTGAAGAAATTACTTCCAGTGTATATATCAATCACCCAGTCTCTATGGAGCAGTACT TAATGGAAGGCAACTTTCACAAGGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGAT ACGATTTCTTCATCGATATATTTTTGAACGCAACCAGGGAGGAAGTTGCCTCTTGCATAG AGCATGCGTATGAAACGTTGTCACTCAAAGATGCTACTCCTATGTTGTTTTTTAGTTCTA ACAACGAAACAAAATTATTTGCTGAGAAGAGAGCATGGAATTTACTGGATGGTACTTTTA TTTTCCCCAAGCATAAAAACGGGCGGACGATGCCATCCCATCCGCCCACGTGACACGAGT AATGCTTGACTATACAAAAGAGCTGGNACCAAATATGTGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8782#0      ATGATTCAGACAACTGAGGATTTGTGTCGCAAACTCCAGAATCTTGATAATGAATGGAAC 60
consensus_8782#1      ------------------------------------------------------------
                                                                                  

consensus_8782#0      AAGAAAAATCACAATGTTGAAGATTGCCTAAAGAAAGTCGAAGAAATAACATCTGGATTA 120
consensus_8782#1      ------------------------------------------------------------
                                                                                  

consensus_8782#0      ACTAGATGTGCATTCCTCCCGAAAAATGAATCAGAAGCTTCTCGACGTGAGCTTCTTGTT 180
consensus_8782#1      ------------------------------------------------------------
                                                                                  

consensus_8782#0      GCTAGAAGCACACTGGAGATAGCAGCTATGCTGTGTTCTGAGAAGCAGGATATTCCTGCT 240
consensus_8782#1      ------------------------------------------------------------
                                                                                  

consensus_8782#0      TTCGAACATTATATGTCTCAGTTAAAATGCTACTACTATGACTATAAAGGAAATCTTCCA 300
consensus_8782#1      ------------------------------------------------------------
                                                                                  

consensus_8782#0      GATTCGCCTTATAAGTATGAACTTCTTGGGCTAAATCTACTTGTTCTTGTTGTCGCAGCG 360
consensus_8782#1      -------------------------------------TACT-GTTCTTGTTGTCGCAGCG 22
                                                           **** ******************

consensus_8782#0      TAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCAG 420
consensus_8782#1      TAGACTAGCTGATTTCCACGTTGAATTAGAACGGCTCACAATTGAAGAAATTACTTCCAG 82
                      ************************************************************

consensus_8782#0      TGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTTAATGGAAGGCAACTTTCACAA 480
consensus_8782#1      TGTATATATCAATCACCCAGTCTCTATGGAGCAGTACTTAATGGAAGGCAACTTTCACAA 142
                      ************************************************************

consensus_8782#0      GGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATT 540
consensus_8782#1      GGTCTTCCTGTCCAAAGGTAACGTGCCATCCAAGAGATACGATTTCTTCATCGATATATT 202
                      ************************************************************

consensus_8782#0      TTTGAACGCAACCAGGTAAAATGTGGACACTAATTTACGTTTTCCTTAGGGAGGAAGTTG 600
consensus_8782#1      TTTGAACGCAACCAGG----------------------------------GAGGAAGTTG 228
                      ****************                                  **********

consensus_8782#0      CCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCANAGATGCTACTCCTATGTTGT 660
consensus_8782#1      CCTCTTGCATAGAGCATGCGTATGAAACGTTGTCACTCAAAGATGCTACTCCTATGTTGT 288
                      *************************************** ********************

consensus_8782#0      TTTTTAGTTCTAACAACGAAACANAATTATTTGCTGAGAAGAGAGCATGGAATT-ACTGG 719
consensus_8782#1      TTTTTAGTTCTAACAACGAAACAAAATTATTTGCTGAGAAGAGAGCATGGAATTTACTGG 348
                      *********************** ****************************** *****

consensus_8782#0      ATGGTACTTTTATTTTCCCCAAGCATAAAAAACGGGCGGACGATGCCATCCCATCCGCCC 779
consensus_8782#1      ATGGTACTTTTATTTTCCCCAAGCATAAAAA-CGGGCGGACGATGCCATCCCATCCGCCC 407
                      ******************************* ****************************

consensus_8782#0      ACGTGACACGAGTAATGCTTGACTATACAAAAGAGCTGGACCAAATAATTTGAAAAATAA 839
consensus_8782#1      ACGTGACACGAGTAATGCTTGACTATACAAAAGAGCTGGNACCAAATATGTGAA------ 461
                      ***************************************  * **  ** ****      

consensus_8782#0      CAAGCCAGGATTATTACTTGTTGTATCTATCCTTCTGAACGAATTGAATTTTGCATGTAT 899
consensus_8782#1      ------------------------------------------------------------
                                                                                  

consensus_8782#0      TTTGTTACATTATTAATGAAGTCAGTGCATTGCACTGCACAACGTTAAAGCGTATTGCGA 959
consensus_8782#1      ------------------------------------------------------------
                                                                                  

consensus_8782#0      ACAAGTAACGCTGCTCGTTTTTTGTATTTCGAGTGGCCACTTGTAGGAATTCTCGTGAAT 1019
consensus_8782#1      ------------------------------------------------------------
                                                                                  

consensus_8782#0      ATACTCAATTTCTTCATGAAAAAAAAAAAAAAAAAAAAAA 1059
consensus_8782#1      ----------------------------------------
                                                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)