cluster # 8784

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Schistosoma mansoni
cluster # 8784 cluster # 8784 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8784#0 length = 592 sequences # 1

consensus_8784#1 length = 384 sequences # 6

consensusID : consensus_8784#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 592
fasta sequence

                              [GCGGGGAATTCGATTCATCCATCTGAGATGGAAGGGGGACCGAAATCCACAATAAAGTGTATCCGAATAACAAAATTCATGAGTCCACTCGCTTTGGAGGTACATATACTAAAATTGGAACGATGCAGAGAAGATTATCAGGACTCCTGAGCAAGGGTGGCACGCAAAGTTGTGAAGCGTTCTAAATATTTTGTGGGTTTTCAAATAGTCAGGTCTTAGGAGCGGATGCTACCAAGCCTTGTGTGGATAGGTCGTTCTCCCTAGGAGTTTTATATGCATGTGCTCCTAATCTAAGAAATAAATTCTGTGAACTAGGAGCATTACCAGACAAATCAAGGCCACTCATTGTAACTTTGACGGAAACTCGGTTAGTCCACGACTTCGACATTACTCCAGAATTATCCAGATACCACTCCCTAGGAGTTTTATATGCATTTGCTCCTAATCAAAGAAATAAATTCTGTAAACTAGGAGCATTACCAGACAAATAAAGGCCGCTCATTGTAACTTTGACGGAAATTTGGTTAGTCCACGACTTCGGCATTACTCCAGAATTATCCAGATACCACTACCTAAGAGGTAATAGACACAG]

[+] EMBL CD178260             [GCGGGGAATTCGATTCATCCATCTGAGATGGAAGGGGGACCGAAATCCACAATAAAGTGTATCCGAATAACAAAATTCATGAGTCCACTCGCTTTGGAGGTACATATACTAAAATTGGAACGATGCAGAGAAGATTATCAGGACTCCTGAGCAAGGGTGGCACGCAAAGTTGTGAAGCGTTCTAAATATTTTGTGGGTTTTCAAATAGTCAGGTCTTAGGAGCGGATGCTACCAAGCCTTGTGTGGATAGGTCGTTCTCCCTAGGAGTTTTATATGCATGTGCTCCTAATCTAAGAAATAAATTCTGTGAACTAGGAGCATTACCAGACAAATCAAGGCCACTCATTGTAACTTTGACGGAAACTCGGTTAGTCCACGACTTCGACATTACTCCAGAATTATCCAGATACCACTCCCTAGGAGTTTTATATGCATTTGCTCCTAATCAAAGAAATAAATTCTGTAAACTAGGAGCATTACCAGACAAATAAAGGCCGCTCATTGTAACTTTGACGGAAATTTGGTTAGTCCACGACTTCGGCATTACTCCAGAATTATCCAGATACCACTACCTAAGAGGTAATAGACACAG]




>consensus_8784#0
GCGGGGAATTCGATTCATCCATCTGAGATGGAAGGGGGACCGAAATCCACAATAAAGTGT
ATCCGAATAACAAAATTCATGAGTCCACTCGCTTTGGAGGTACATATACTAAAATTGGAA
CGATGCAGAGAAGATTATCAGGACTCCTGAGCAAGGGTGGCACGCAAAGTTGTGAAGCGT
TCTAAATATTTTGTGGGTTTTCAAATAGTCAGGTCTTAGGAGCGGATGCTACCAAGCCTT
GTGTGGATAGGTCGTTCTCCCTAGGAGTTTTATATGCATGTGCTCCTAATCTAAGAAATA
AATTCTGTGAACTAGGAGCATTACCAGACAAATCAAGGCCACTCATTGTAACTTTGACGG
AAACTCGGTTAGTCCACGACTTCGACATTACTCCAGAATTATCCAGATACCACTCCCTAG
GAGTTTTATATGCATTTGCTCCTAATCAAAGAAATAAATTCTGTAAACTAGGAGCATTAC
CAGACAAATAAAGGCCGCTCATTGTAACTTTGACGGAAATTTGGTTAGTCCACGACTTCG
GCATTACTCCAGAATTATCCAGATACCACTACCTAAGAGGTAATAGACACAG

consensusID : consensus_8784#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 384
fasta sequence

                              [TACTTATTTTAGAGCCCAGTTGTATCAGTACTCGCTTCGGTGGTACATATACTAAAATTGGAACGATGCAGAGAAGATTAACATGGCCCCTGCGCAAGGATGATACGCAAAATCGTGAAACTGAAATGGATACTTAAGACAGTAGGATGCATATGAGCTTCAGAATCTAACCAGGGAAATACCATTTACATTGCAAAAATGATATTTTTCGTCTGTTCAGTGAATTAGATGATCAGAGAAAAGTCTACTCTACGTTACTTAACGTACCAACAGTAACCACTTATGATTGATTAATACCACTTGATACGGATCAGTCGATTAAAAAGGTATGGTGTTAGTTGAGAGCGGCATTTGAGGAAGTAACAGCTTCTATTCTATGGTCAT]

[-] EMBL CD156449             [TACTTATTTTAGAGCCCAGTTGTATCAGTACTCGCTTCGGTGGTACATATACTAAAATTGGAACGATGCAGAGAAGATTAACATGGCCCCTGCGCAAGGATGATACGCAAAATCGTGAAACTGAAATGGATACTTAAGACAGTAGGATGCATATGAGCTTCAGAATCTAACCAGGGAAATACCATTTACATTGCGAAAATGATATTTTTCGTCTGTTCAGTGAATTAGATGATCAGAGAAAAGTCTACTCTACGTTACTTAACGTACCAACAGTAACCACTTATGATTGATTAATACCACTTGATACGGATCAGTCGATTAAAAAGGTATGGTGTTAGTTGAGAGCGGCATTTGAGGAAGTAACAGCTTCTATTCTATGGTCAT]
[+] EMBL CD155953             [   TTATTTTATAGCCCAGTTGTATCAGTACTCGCTTGGGTGGTGCATATACTAAAATTGGAACGATGCATAGAAGATTAACATGGCCCCTGCGCAAGGATGATACGCAAAATGGTGAAACTGAAATGGATACTTAAGACAGTAGGATGCATATGAGCTTCACAATCTAACCAGGGAAATACCATTTACATTGCAAAAATGATATTTTTCGTCTGTTCAGTGAATTAGATGATCAGAGAAAAGTGTACTCTACGTTACTTAACGTACCAACAGTAACCACTTATGATTGATTAATACCACTTGATACGGATCAGTCGATTAAAAAGGTATGGTGTTAATTGAGAGCGGCATTTGAGGAAGTAACAGCTTCTATTCTATGGTCA ]
[+] EMBL CD156208             [   TTATTTTAGGGCCCAGTTGTATCAGTACTCGCTTCGGTGGTACATATACTAAAATCGGAACGATGCAGAGAAGATTAACATGGCCCCTGCGCAAGGATGATACGCAAAATCGTGAAACTGAAATGGATACTTAAGACAGTAGGATGCATATGAGCTTCAGAATCTAACCAGGGAAATACCATTTACATTGCAAAAATGATATTTTTCGTCTGTTCAGTGAATTAGATGATCAGAGAAAAGTCTACTCTACGTTACTTAACGTACCAACAGTAACCACTTATGATTGATTAATACCACTTGATACGGATCAGTCGATTAAAAAGGTATGGTGTTAGTTGAGAGCGGCATTTGAGGAAGTAACAGCTTCTATTCTATGGTCA ]
[+] EMBL CD156174             [   TTATTTTAGGGCCCAGTTGTATCAGTACTCGCTTCGGTGGTACATATACTAAAATCGGAACGATGCAGAGAAGATTAACATGGCCCCTGCGCAAGGATGATACGCAAAATCGTGAAACTGAAATGGATACTTAAGACAGTAGGATGCATATGAGCTTCAGAATCTAACCAGGGAAATACCATTTACATTGCAAAAATGATATTTTTCGTCTGTTCAGTGAATTAGATGATCAGAGAAAAGTCTACTCTACGTTACTTAACGTACCAACAGTAACCACTTATGATTGATTAATACCACTTGATACGGATCAGTCGATTAAAAAGGTATGGTGTTAGTTGAGAGCGGCATTTGAGGAAGTAACAGCTTCTATTCTATGGTCA ]
[+] EMBL CD155901             [   TTATTTTAGAGCCCAGTTGTATCAGTACTCGCTTCGGCGGTACATATACTAAAATTGGAACGATGCAGAGAAGATTAACATGGCCCCTGCGCAAGGATGATACGCAAAATCGTGAAACTGAAATGGATACTTAAGACAGTAGGATGCATATGAGCTTCAGAATCTAACCAGGGAAATACCATTTACATTGCAAAAATGATATTTTTCGTCTGTTCAGTGAATTAGATGATCAGAGAAAAGTCTACTCTACGTTACTTAACGTACCAACAGTAACCACTTATGATTGATTAATACCACTTGATACGGATCAGTCGATTAAAAAGGTATGGTGTTAGTTGAGAGCGGCATTTGAGGAAGTAACAGCTTCTATTCTATGGTCA ]
[+] EMBL CD155899             [   TTATTTTAGAGCCCAGTTGTATCAGTACTCGCTTCGGCGGTACATATACTAAAATTGGAACGATGCAGAGAAGATTAACATGGCCCCTGCGCAAGGATGATACGCAAAATCGTGAAACTGAAATGGATACTTAAGACAGTAGGATGCATATGAGCTTCAGAATCTAACCAGGGAAATACCATTTACATTGCAAAAATGATATTTTTCGTCTGTTCAGTGAATTAGATGATCAGAGAAAAGTCTACTCTACGTTACTTAACGTACCAACAGTAACCACTTATGATTGATTAATACCACTTGATACGGATCAGTCGATTAAAAAGGTATGGTGTTAGTTGAGAGCGGCATTTGAGGAAGTAACAGCTTCTATTCTATGGTCA ]




>consensus_8784#1
TACTTATTTTAGAGCCCAGTTGTATCAGTACTCGCTTCGGTGGTACATATACTAAAATTG
GAACGATGCAGAGAAGATTAACATGGCCCCTGCGCAAGGATGATACGCAAAATCGTGAAA
CTGAAATGGATACTTAAGACAGTAGGATGCATATGAGCTTCAGAATCTAACCAGGGAAAT
ACCATTTACATTGCAAAAATGATATTTTTCGTCTGTTCAGTGAATTAGATGATCAGAGAA
AAGTCTACTCTACGTTACTTAACGTACCAACAGTAACCACTTATGATTGATTAATACCAC
TTGATACGGATCAGTCGATTAAAAAGGTATGGTGTTAGTTGAGAGCGGCATTTGAGGAAG
TAACAGCTTCTATTCTATGGTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8784#0      GCGGGGAATTCGATTCATCCATCTGAGATGGAAGGGGGACCGAAATCCACAATAAAGTGT 60
consensus_8784#1      -------------------------------------------------------TACTT 5
                                                                                 *

consensus_8784#0      ATCCGAATAACAAAATTCATGAGTCCACTCGCTTTGGAGGTACATATACTAAAATTGGAA 120
consensus_8784#1      ATTTTAGAGCCCAGTTGTATCAGT--ACTCGCTTCGGTGGTACATATACTAAAATTGGAA 63
                      **   *    * *  *  ** ***  ******** ** **********************

consensus_8784#0      CGATGCAGAGAAGATTATCAGGACTCCTGAGCAAGGGTGGCACGCAAAGTTGTGAAGCGT 180
consensus_8784#1      CGATGCAGAGAAGATTAACATGGCCCCTGCGCAAGGATGATACGCAAAATCGTGAAAC-- 121
                      ***************** ** * * **** ****** **  ******* * ***** *  

consensus_8784#0      TCTAAATATTTTGTGGGTTTTCAAATAGTCAGGTCTTAGGAGCGGATGCTACCAAGCCTT 240
consensus_8784#1      --TGAA------ATGGATACTTAAGACAGTAGG----ATGCATATGAGCTTCAGAATCTA 169
                        * **       *** *  * **      ***    * *       *** *  *  ** 

consensus_8784#0      GT-GTGGATAGGTCGTTCTCCCTAGGAGTTTTATATGCATGTGCTCCTAATCTAAGAAAT 299
consensus_8784#1      ACCAGGGAAATACCATTTACATTGCAAAAATGATAT--------TTTTCGTCTGTTCAGT 221
                           *** *   * **  *  *   *   * ****        *  *  ***    * *

consensus_8784#0      AAATTCTGTGAACTAGGAGCATTACCAGACAAATCAAGGCCACTCATTGTAACTTTGACG 359
consensus_8784#1      GAATTAGATGATCAGAGAAAAGT------CTACTCTACGTTACTTAACGTACCAACAGTA 275
                       ****   *** *   **  * *      * * ** * *  *** *  *** *       

consensus_8784#0      GAAACTCGGTTAGTCCACGACTTCGACATTACTCCAGAATTATCCAGATACCACTCCCTA 419
consensus_8784#1      ACCACTTA--TGATTGATTAATACCACTTGATAC--GGATCAGTCGATTAAAAAGGTATG 331
                         ***    *  *  *  * * * ** * *  *  * ** *  *   **  *     * 

consensus_8784#0      GGAGTTTTATATGCATTTGCTCCTAATCAAAGAAATAAATTCTGTAAACTAGGAGCATTA 479
consensus_8784#1      G---TGTTAGTTGAGAGCGGCATTTGAGGAAGTAACAGCTTCTAT--TCTATGGTCAT-- 384
                      *   * ***  **     *    *     *** ** *  **** *   *** *  ***  

consensus_8784#0      CCAGACAAATAAAGGCCGCTCATTGTAACTTTGACGGAAATTTGGTTAGTCCACGACTTC 539
consensus_8784#1      ------------------------------------------------------------
                                                                                  

consensus_8784#0      GGCATTACTCCAGAATTATCCAGATACCACTACCTAAGAGGTAATAGACACAG 592
consensus_8784#1      -----------------------------------------------------