cluster # 8786

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8786 cluster # 8786 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8786#0 length = 941 sequences # 5

consensus_8786#1 length = 488 sequences # 2

consensusID : consensus_8786#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 941
fasta sequence

                              [TTTTGGCTGAGGATTCTAATTGTCTCCGATAACACAGCAGACGTTGAGTTAATAAAGTAGACAAGTGTGGATTTGTAATAAAGTTATGTGTGAGCATTGTAGCTGCATCAGGTCTTCGTCGTTCTGCTTTGATTAAACAACATTTAATAAACGAATGAAATAATGGTGACCATTTATGACGGTCTTGTAAAGAAGGAGGCTTATAGTTTCGCGAACCCAGAATTTGTAGTGCTTTCCTAGGGTCTAAATCGAACATTGGAGGTTGCAGTTCAGCATATTCAATAGCGGTAATCCCAACACCCCAAATATCACACTTTCCATCATAACCCGAGCCACGAGATTCAATTGAGGCTACCTCAGGCGCCATCCAGTAGGGTGTTCCAATTAAAGTTGTCCGTTTGGCAATCGAAGTACTCAGTTGGGCGGCGACACCGAAATCCGCCACTTTGACATGACCGTCATCTGTCAGAAGAATATTAGCACCTTTAATATCTCTATGAATACGCCCACGATTGTGCATAAAGTTCAAACCTTGTAAAGTTTCCCGGGAGACAAATGCAATGCAGTCTTCTTCTAAGGGACGTCTGGTATAGAGATAAATATCTTGCATAGATTGTCCACCGCAATATTCCATGCATATCCATAATTTGTTATTTCTAAGATAACTACCATAAAATTGCACAATATTTGGATGCCGACATTCTCTCAAGGTGTGTATTTCTTGACAAATTGATCGAATGTCATCCTTTAGATCAATCTTCATAACTTTAACCGCCACCAGTGTTCGCCTTTCACGATGAACCGCCTTGAAGACATCTCCGTAGGTCCCACTACCGATTGGAGCGAGTATTTTATATTCCTCCTTCGGGTCATTAGGTTTCACAAACTGTCGAAGGTAATCTAGCTTAGGATGGTTCATGTATCGTTATATTCATTTCGTC]

[-] EMBL CD188174             [TTTTGGCTGAGGATTCTAATTGTCTCCGATAACACAGCAGACGTTGAGTTAATAAAGTAGACAAGTGTGGATTTGTAATAAAGTTATGTGTGAGCATTGTAGCTGCATCAGGTCTTCGTCGTTCTGCTTTGATTAAACAACATTTAATAAACGAATGAAATAATGGTGACCATTTATGACGGTCTTGTAAAGAAGGAGGCTTATAGTTTCGCGAACCCAGAATTTGTAGTGCTTTCCTAGGGTCTAAATCGAACATTGGAGGTTGCAGTTCAGCATATTCAATAGCGGTAATCCCAACACCCCAAATATCACACTTTCCATCATAACCCGAGCCACGAGATTCAATTGAGGCTACCTCAGGCGCCATCCAGTAGGGTGTTCCAATTAAAGTTGTCCGTTTGGCAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD147010             [                      TCTCCGATAACACAGCAGACGTTGAGTTAATAAAGTAGACAAGTGTGGATTTGTAATAAAGTTATGTGTGAGCATTGTAGCTGCATCAGGTCTTCGTCGTTCTGCTTTGATTAAACAACATTTAATAAACGAATGAAATAATGGTGACCATTTATGACGGTCTTGTAAAGAAGGAGGCTTATAGTTTCGCGAACCCAGAATTTGTAGTGCTTTCCTAGGGTCTAAATCGAACATTGGAGGTTGCAGTTCAGCATATTCAATAGCGGTAATCCCAACACCCCAAATATCACACTTTCCATCATAACCCGAGCCACGAGATTCAATTGAGGCTACCTCAGGCGCCATCCAGTAGGGTGTTCCAATTAAAGTTGTCCGTTTGGCAATCGAAGTACTCAGTTGGGCGGCGACACCGAAATCCGCCACTTTGACATGACCGTCATCTGTCAGAAGAATATTAGCACCTTTAATATCTCTATGAATACGCCCACGATTGTGCATAAAGTTCAAACCTTGTAAAGTTTCCCGGGAGACAAATGCAATGCAGTCTTCTTCTAAGGGACGTCTGGTATAGAGATAAATATCTTGCAT                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD165321             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CAAATGCAATGCAGTCTTCTTCTAAGGGACGTCTGGTATAGAGATAAATATCTTGCATAGATTGTCCACCGCAATATTCCATGCATATCCATAATTTGTTATTTCTAAGATAACTACCATAAAATTGCACAATATTTGGATGCCGACATTCTCTCAAGGTGTGTATTTCTTGACAAATTGATCGAATGTCATCCTTTAGATCAATCTTCATAACTTTAACCGCCACCAGTGTTCGCCTTTCACGATGAACCGCCTTGAAGACATCTCCGTAGGTCCCACTACCGATTGGAGCGAGTATTTTA                                                                                       ]
[-] EMBL CD185924             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AATGCAGTCTTCTTCTAAGGGACGTCTGGTATAGAGATAAATATCTTGCATAGATTGTCCACCGCAATATTCCATGCATATCCATAATTTGTTATTTCTAAGATAACTACCATAAAATTGCACAATATTTGGATGCCGACATTCTCCCAAGGTGTGTATTTCTTGACAAATTGATCGAATGTCATCCTTTAGATCAATCTTCATAACTTTAACCGCCACCAGTGTTCGCCTTTCACGATGAACCGCCTTGAAGACATCTCCGTAGGTCCCACTACCGATTGGAGCGAGTATTTTATATTCCTCCTTCGGGTCATTAGGTTTCACAAACTGTCGAAGGTAATCTAGCTTAGGATGGTTCATGT                    ]
[-] EMBL CD193935             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TACCATAAAATTGCACAATATTTGGATGCCGACATTCTCTCAAGGTGTGTATTTCTTGACAAATTGATCGAATGTCATCCTTTAGATCAATCTTCATAACTTTAACCGCCACCAGTGTTCGCCTTTCACGATGAACCGCCTTGAAGACATCTCCGTAGGTCCCACTACCGATTGGAGCGAGTATTTTATATTCCTCCTTCGGGTCATTAGGTTTCACAAACTGTCGAAGGTAATCTAGCTTAGGATGGTTCATGTATCGTTATATTCATTTCGTC]




>consensus_8786#0
TTTTGGCTGAGGATTCTAATTGTCTCCGATAACACAGCAGACGTTGAGTTAATAAAGTAG
ACAAGTGTGGATTTGTAATAAAGTTATGTGTGAGCATTGTAGCTGCATCAGGTCTTCGTC
GTTCTGCTTTGATTAAACAACATTTAATAAACGAATGAAATAATGGTGACCATTTATGAC
GGTCTTGTAAAGAAGGAGGCTTATAGTTTCGCGAACCCAGAATTTGTAGTGCTTTCCTAG
GGTCTAAATCGAACATTGGAGGTTGCAGTTCAGCATATTCAATAGCGGTAATCCCAACAC
CCCAAATATCACACTTTCCATCATAACCCGAGCCACGAGATTCAATTGAGGCTACCTCAG
GCGCCATCCAGTAGGGTGTTCCAATTAAAGTTGTCCGTTTGGCAATCGAAGTACTCAGTT
GGGCGGCGACACCGAAATCCGCCACTTTGACATGACCGTCATCTGTCAGAAGAATATTAG
CACCTTTAATATCTCTATGAATACGCCCACGATTGTGCATAAAGTTCAAACCTTGTAAAG
TTTCCCGGGAGACAAATGCAATGCAGTCTTCTTCTAAGGGACGTCTGGTATAGAGATAAA
TATCTTGCATAGATTGTCCACCGCAATATTCCATGCATATCCATAATTTGTTATTTCTAA
GATAACTACCATAAAATTGCACAATATTTGGATGCCGACATTCTCTCAAGGTGTGTATTT
CTTGACAAATTGATCGAATGTCATCCTTTAGATCAATCTTCATAACTTTAACCGCCACCA
GTGTTCGCCTTTCACGATGAACCGCCTTGAAGACATCTCCGTAGGTCCCACTACCGATTG
GAGCGAGTATTTTATATTCCTCCTTCGGGTCATTAGGTTTCACAAACTGTCGAAGGTAAT
CTAGCTTAGGATGGTTCATGTATCGTTATATTCATTTCGTC

consensusID : consensus_8786#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 488
fasta sequence

                              [CGTCGTTCTTTGATTAAACAACATTTAATAAACGAATGAAATAATGGTGACCATTTATGACGGTCTTGTAAAGAAGGAGGCTTATAGTTTCGCGAACCCAGAATTTGTAGTGCTTTCCTAGGGTCTAAATCGAACATTGGAGGTTGCAGTTCAGCATAAAGTTCAAACCTTGTAAAGTTTCCCGGGAGACAAATGCAATGCAGTCTTCTTCTAAGGGACGTCTGGTATAGAGATAAATATCTTGCATAGATTGTCCACCGCAATATTCCATGCATATCCATAATTTGTTATTTCTAAGATAACTACCATAAAATTGCACAATATTTGGATGCCGACATTCTCTCAAGGTGTGTATTTCTTGACAAATTGATCGAATGTCATCCTTTAGATCAATCTTCATAACTTTAACCGCCACCAGTGTTCGCCTTTCACGATGAACCGCCTTGAAGACATCTCCGTAGGTCCCACTACCGATTGGAGCGAGTATT]

[+] EMBL CD095206             [CGTCGTTCTTTGATTAAACAACATTTAATAAACGAATGAAATAATGGTGACCATTTATGACGGTCTTGTAAAGAAGGAGGCTTATAGTTTCGCGAACCCAGAATTTGTAGTGCTTTCCTAGGGTCTAAATCGAACATTGGAGGTTGCAGTTCAGCATAAAGTTCAAACCTTGTAAAGTTTCCCGGGAGACAAATGCAATGCAGTCTTCTTCTAAGGGACGTCTGGTATAGAGATAAATATCTTGCATAGATTGTCCACCGCAATATTCCATGCATATCCATAATTTGTTATTTCTAAGATAACTACCATAAAATTGCACAATATTTGGATGCCGACATTCTCTCAAGGTGTGTATTTCTTGACAAATTGATCGAATGTCATCCTTTAGATCAATCTTCATAACTTTAACCGCCACCAGTGTTCGCCTTTCACGATGAACCGCCTTGAAGACATCTCCGTAGGTCCCACTACCGATTGGAGCGAGTATT]
[+] EMBL CD095265             [CGTCGTTCTTTGATTAAACAACATTTAATAAACGAATGAAATAATGGTGACCATTTATGACGGTCTTGTAAAGAAGGAGGCTTATAGTTTCGCGAACCCAGAATTTGTAGTGCTTTCCTAGGGTCTAAATCGAACATTGGAGGTTGCAGTTCAGCATAAAGTTCAAACCTTGTAAAGTTTCCCGGGAGACAAATGCAATGCAGTCTTCTTCTAAGGGACGTCTGGTATAGAGATAAATATCTTGCATAGATTGTCCACCGCAATATTCCATGCATATCCATAATTTGTTATTTCTAAGATAACTACCATAAAATTGCACAATATTTGGATGCCGACATTCTCTCAAGGTGTGTATTTCTTGACAAATTGATCGAATGTCATCCTTTAGATCAATCTTCATAACTTTAACCGCCACCAGTGTTCGCCTTTCACGATGAAC                                                 ]




>consensus_8786#1
CGTCGTTCTTTGATTAAACAACATTTAATAAACGAATGAAATAATGGTGACCATTTATGA
CGGTCTTGTAAAGAAGGAGGCTTATAGTTTCGCGAACCCAGAATTTGTAGTGCTTTCCTA
GGGTCTAAATCGAACATTGGAGGTTGCAGTTCAGCATAAAGTTCAAACCTTGTAAAGTTT
CCCGGGAGACAAATGCAATGCAGTCTTCTTCTAAGGGACGTCTGGTATAGAGATAAATAT
CTTGCATAGATTGTCCACCGCAATATTCCATGCATATCCATAATTTGTTATTTCTAAGAT
AACTACCATAAAATTGCACAATATTTGGATGCCGACATTCTCTCAAGGTGTGTATTTCTT
GACAAATTGATCGAATGTCATCCTTTAGATCAATCTTCATAACTTTAACCGCCACCAGTG
TTCGCCTTTCACGATGAACCGCCTTGAAGACATCTCCGTAGGTCCCACTACCGATTGGAG
CGAGTATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8786#0      TTTTGGCTGAGGATTCTAATTGTCTCCGATAACACAGCAGACGTTGAGTTAATAAAGTAG 60
consensus_8786#1      ------------------------------------------------------------
                                                                                  

consensus_8786#0      ACAAGTGTGGATTTGTAATAAAGTTATGTGTGAGCATTGTAGCTGCATCAGGTCTTCGTC 120
consensus_8786#1      ------------------------------------------------------------
                                                                                  

consensus_8786#0      GTTCTGCTTTGATTAAACAACATTTAATAAACGAATGAAATAATGGTGACCATTTATGAC 180
consensus_8786#1      ------------------------------------------------------------
                                                                                  

consensus_8786#0      GGTCTTGTAAAGAAGGAGGCTTATAGTTTCGCGAACCCAGAATTTGTAGTGCTTTCCTAG 240
consensus_8786#1      ------------------------------------------------------------
                                                                                  

consensus_8786#0      GGTCTAAATCGAACATTGGAGGTTGCAGTTCAGCATATTCAATAGCGGTAATCCCAACAC 300
consensus_8786#1      ------------------------------------------------------------
                                                                                  

consensus_8786#0      CCCAAATATCACACTTTCCATCATAACCCGAGCCACGAGATTCAATTGAGGCTACCTCAG 360
consensus_8786#1      -------------------------------------------CGTCGTTCTTTGATTAA 17
                                                                   * *    *   * * 

consensus_8786#0      GCGCCATCCAGTAGGGTGTTCCAATTAAAGTTGTCCGTTTGGCAATCGAAGTACTCAGTT 420
consensus_8786#1      ACAACATTTAATAAA-CGAATGAAATAATGGTGACCATTTA-----TGACGGTCTTGTAA 71
                       *  ***  * **    *    ** *** * ** ** ***       ** *  **     

consensus_8786#0      GGGCGGCGACACCGAAATCCGCCACTTTGACATGACCGTCATCTGTCAGAAGAATATTAG 480
consensus_8786#1      AGAAGGAGGCTTATAGTTTCGCGAACCCAGAAT--TTGTAGTGCTTTCCTAGGGTCTAAA 129
                       *  ** * *    *  * *** *       **    **  *   *    **  * * * 

consensus_8786#0      CACCTTTAATATCTCTATGAATACGCCCACGATTGTGCATAAAGTTCAAACCTTGTAAAG 540
consensus_8786#1      ----TCGAACAT-----TGGA---GGTTGCAGTTCAGCATAAAGTTCAAACCTTGTAAAG 177
                          *  ** **     ** *   *    *  **  ************************

consensus_8786#0      TTTCCCGGGAGACAAATGCAATGCAGTCTTCTTCTAAGGGACGTCTGGTATAGAGATAAA 600
consensus_8786#1      TTTCCCGGGAGACAAATGCAATGCAGTCTTCTTCTAAGGGACGTCTGGTATAGAGATAAA 237
                      ************************************************************

consensus_8786#0      TATCTTGCATAGATTGTCCACCGCAATATTCCATGCATATCCATAATTTGTTATTTCTAA 660
consensus_8786#1      TATCTTGCATAGATTGTCCACCGCAATATTCCATGCATATCCATAATTTGTTATTTCTAA 297
                      ************************************************************

consensus_8786#0      GATAACTACCATAAAATTGCACAATATTTGGATGCCGACATTCTCTCAAGGTGTGTATTT 720
consensus_8786#1      GATAACTACCATAAAATTGCACAATATTTGGATGCCGACATTCTCTCAAGGTGTGTATTT 357
                      ************************************************************

consensus_8786#0      CTTGACAAATTGATCGAATGTCATCCTTTAGATCAATCTTCATAACTTTAACCGCCACCA 780
consensus_8786#1      CTTGACAAATTGATCGAATGTCATCCTTTAGATCAATCTTCATAACTTTAACCGCCACCA 417
                      ************************************************************

consensus_8786#0      GTGTTCGCCTTTCACGATGAACCGCCTTGAAGACATCTCCGTAGGTCCCACTACCGATTG 840
consensus_8786#1      GTGTTCGCCTTTCACGATGAACCGCCTTGAAGACATCTCCGTAGGTCCCACTACCGATTG 477
                      ************************************************************

consensus_8786#0      GAGCGAGTATTTTATATTCCTCCTTCGGGTCATTAGGTTTCACAAACTGTCGAAGGTAAT 900
consensus_8786#1      GAGCGAGTATT------------------------------------------------- 488
                      ***********                                                 

consensus_8786#0      CTAGCTTAGGATGGTTCATGTATCGTTATATTCATTTCGTC 941
consensus_8786#1      -----------------------------------------