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Schistosoma mansoni
cluster # 8787 cluster # 8787       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8787#0 length = 695 sequences # 5  
consensus_8787#1 length = 630 sequences # 2  

consensusID : consensus_8787#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 695
fasta sequence
                              [CATGGCNCGTTGTAGATGAATTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGTCTTCAAAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATATTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCGCGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGTGCTTCATAAATTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAATTAATAGACAAGAAAGGTGCTCTGGATCTACTTATTGGTGAGTCTTTTGTGGACAAATATTCAAACGTAATTCTAATCTTATGCGTCCTTAAGATACTGAAAACAGTTCGGTCAGCAAAACACAGCGGATACGTGTATTCAATCGACATTGTCTTCAAAAGTTAACATCTCTGTATCAGTGGCNGGGGGAGGGTAAAACTGTTGATGAAGTACTGAGAA-AAGATTA]

[+] EMBL CD115894             [CATGGCNCGTTGTAGATGAATTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATCCTGGTCACGATCGGAAGGCTGGAGAGTCTTCATAGCACTCTACTTTATTATCTTGAAAACTTCTCGCGAGTTAAGCGCTCGTTTTTCTGATGTTGCTNGAGAGCTTGCCGAGGGATTTCTTGGGGACTCTCGCTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD115900             [                    TTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGTCTTCAAAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATATTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCGCGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGTGCTTCATAAATTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAATTAATAGACAAGATAGGTGCTCTGGATCTACTTATTGGTGAGTCTTTTGTGGACAAATATTCAAACGTAATTCTAATCTTATGCGTCCTTAAGATACTGAAAACAGTTCGGTCAGCAAAACACAGCGGATACGTGTATTCAATCGACATTGTCTTCAAAAGTTAACATCTCTGTATCAGTGGCNGGGGGAGGGTAAAACTGTTGATGAAGTACTGAGAA AAGATTA]
[+] EMBL CD115566             [                    TTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGTCTTCAAAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATATTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCGCGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGTGCTTCATAAATTTCTTGGCTTCTCTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAATTAATAGACAAGAAAGGTGCTCTGGATCTACTTATTGGTGAGTCTTTTGTGGACAAATATTCAAACGTAATTCTAATCTTATGCGTCCTTAAGATACTGANNACAGTTCGGTCAGCANAACACAGCGGATACGTGTATTCAATCGACATTGTCTTCAAAAGTT ACATCTCTGTATCAGTGGCGGNGGGAGGGTAAGACTGTTGATGAAGTACTGAGAANAAGATa ]
[+] EMBL CD115863             [                    TTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGTCTTCAAAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATATTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCGCGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGTGCTTCATAAATTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAATTACTAGACATGAAAGGTGCTCTGGATCTACTTATTGGT                                                                                                                                                                                            ]
[+] EMBL CD115787             [                    TTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGTCTTCAAAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATATTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTGCATTGAGGAAGACTCACAATGCGGAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]


>consensus_8787#0 CATGGCNCGTTGTAGATGAATTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGA TACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGTCTTCAAAGCACTCTA CATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATATTGCTAGAGA GCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTACAATGAGGAA GTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGT CAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCGCGACGATGAA GAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGTGCTTCATAAA TTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAATTAATAGACAA GAAAGGTGCTCTGGATCTACTTATTGGTGAGTCTTTTGTGGACAAATATTCAAACGTAAT TCTAATCTTATGCGTCCTTAAGATACTGAAAACAGTTCGGTCAGCAAAACACAGCGGATA CGTGTATTCAATCGACATTGTCTTCAAAAGTTAACATCTCTGTATCAGTGGCNGGGGGAG GGTAAAACTGTTGATGAAGTACTGAGAAAAGATTA



consensusID : consensus_8787#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 630
fasta sequence
                              [GTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGCTTCTTGCAGTCTTCAAAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATGTTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACCCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCGCGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGTGCTTCATAAATTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAATTAATTGACAAGAAAGGTGCTCTGGATCCACTTATTGGTGAGTCTTTTGTGGACAAATATTCAAACGTAATTCTAATCTTATGCGTCCTTAAGAAAGTAGCTGANAACAGTTCGGTCAGCAAAACACAGCGGATACGTGTATTCAATCGACATTGTCTTCAAAAGTTAACATCT]

[+] EMBL CD158683             [GTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGCTTCTTGCAGTCTTCAAAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATGTTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACCCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAG                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD160573             [                          ccccctgctGATACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGCTTCTTGCAGTCTTCAAAGCACTCTACATTATTATCTTGAAGACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATGTTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCGCGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGTGCTTCATAAATTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAATTAATTGACAAGAAAGGTGCTCTGGATCCACTTATTGGTGAGTCTTTTGTGGACAAATATTCAAACGTAATTCTAATCTTATGCGTCCTTAAGAAAGTAGCTGANAACAGTTCGGTCAGCAAAACACAGCGGATACGTGTATTCAATCGACATTGTCTTCAAAAGTTAACATCT]


>consensus_8787#1 GTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGATACTCAAGTTTCTGGATACTGGT CAAGATCGGAAGGCAGGAGAGCTTCTTGCAGTCTTCAAAGCACTCTACATTATTATCTTG AAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATGTTGCTAGAGAGCTTGCCGAGGGA TTTCTTGAAGACCCTCGCTTCTCATTATGCCTCAGTACAATGAGGAAGTCTCAGAATGCG GAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTGTCGTGACAGTCAGTGAAGATTTA GCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCGCGACGATGAAGAAATGTTCTCAG AGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGTGCTTCATAAATTTCTTGGCTTCT TTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAATTAATTGACAAGAAAGGTGCTCTG GATCCACTTATTGGTGAGTCTTTTGTGGACAAATATTCAAACGTAATTCTAATCTTATGC GTCCTTAAGAAAGTAGCTGANAACAGTTCGGTCAGCAAAACACAGCGGATACGTGTATTC AATCGACATTGTCTTCAAAAGTTAACATCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8787#0      CATGGCNCGTTGTAGATGAATTTGTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGA 60
consensus_8787#1      -----------------------GTTGTTGATGTCGTTGCTGGAGGAGATGTTGTTCAGA 37
                                             *************************************

consensus_8787#0      TACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAG----------TCTTCA 110
consensus_8787#1      TACTCAAGTTTCTGGATACTGGTCAAGATCGGAAGGCAGGAGAGCTTCTTGCAGTCTTCA 97
                      ********************************************          ******

consensus_8787#0      AAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATA 170
consensus_8787#1      AAGCACTCTACATTATTATCTTGAAAACTTCTCGCGAGTTAAGCACTCGTTTTTCTGATG 157
                      *********************************************************** 

consensus_8787#0      TTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACTCTCGCTTCTCATTATGCCTCAGTA 230
consensus_8787#1      TTGCTAGAGAGCTTGCCGAGGGATTTCTTGAAGACCCTCGCTTCTCATTATGCCTCAGTA 217
                      *********************************** ************************

consensus_8787#0      CAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTG 290
consensus_8787#1      CAATGAGGAAGTCTCAGAATGCGGAAATCTTAAAAACATCTCTCCAGCTTTTAGCATCTG 277
                      ************************************************************

consensus_8787#0      TCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCG 350
consensus_8787#1      TCGTGACAGTCAGTGAAGATTTAGCTCGAGCCGTCTTGCGATATATTGATTTTGATAGCG 337
                      ************************************************************

consensus_8787#0      CGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGT 410
consensus_8787#1      CGACGATGAAGAAATGTTCTCAGAGAAGAAACCTTGTCGATAAGTGTGACGTCCGGACGT 397
                      ************************************************************

consensus_8787#0      GCTTCATAAATTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAAT 470
consensus_8787#1      GCTTCATAAATTTCTTGGCTTCTTTTGTTTATTTAGACAACAATTTTGTTTTGAGAGAAT 457
                      ************************************************************

consensus_8787#0      TAATAGACAAGAAAGGTGCTCTGGATCTACTTATTGGTGAGTCTTTTGTGGACAAATATT 530
consensus_8787#1      TAATTGACAAGAAAGGTGCTCTGGATCCACTTATTGGTGAGTCTTTTGTGGACAAATATT 517
                      **** ********************** ********************************

consensus_8787#0      CAAACGTAATTCTAATCTTATGCGTCCTTAAGATA----CTGAAAACAGTTCGGTCAGCA 586
consensus_8787#1      CAAACGTAATTCTAATCTTATGCGTCCTTAAGAAAGTAGCTGANAACAGTTCGGTCAGCA 577
                      ********************************* *    **** ****************

consensus_8787#0      AAACACAGCGGATACGTGTATTCAATCGACATTGTCTTCAAAAGTTAACATCTCTGTATC 646
consensus_8787#1      AAACACAGCGGATACGTGTATTCAATCGACATTGTCTTCAAAAGTTAACATCT------- 630
                      *****************************************************       

consensus_8787#0      AGTGGCNGGGGGAGGGTAAAACTGTTGATGAAGTACTGAGAAAAGATTA 695
consensus_8787#1      -------------------------------------------------
                                                                       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)