cluster # 8788

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Schistosoma mansoni
cluster # 8788 cluster # 8788 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8788#0 length = 673 sequences # 5

consensus_8788#1 length = 299 sequences # 1
consensus_8788#2 length = 211 sequences # 1

consensusID : consensus_8788#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 673
fasta sequence

                              [TCGAGGCGAGAATCGCACGAGGATTTTTTACTTGATTTGCCGGACACATTATGAATCAAATAACATGGTTATCTGTATTCTATACCAAGGGATATTTCATCCTGATGCTAAGTTTCTTTACTTATATTCCTTCATTGGTATCCCTAAATGAAATGAATGTGTCAGATGAACAAATTACTGGTTATCCATCAATGAAACAAATACTCTCCAAAGTTAAAGAAGCTGAACAAATTGACGCATTGAATGATTCGAGGATTGAAACAGAACCTGATGAATTAATTATAGCCCCAGTACGATTTAGTCGTTTACGACGTTATTTTAGACATCAAAAACGTATGATGAGAGCACAATATAGAATGATGAGATTACAAAGAAGATTATACCGTCGACATTATCGTCGTCCATTTGGATATGG-TTACTTTCCATAATGATTATCTTG-AATCACTTAAACA-CTCA-TTTTACA-TTATTA-CTTTTTATTGATTGTAACGGTG-AACTTTCTGATTGTTTATCAGTTAAGATGGTGAGTTC-TATTGATGAAC-TAATTCTATT-TTCAAATTTAT-TCCTCGCATAAAAGCCGCG-AAAGGAAACCTGACATCTACTTTCTAATTAACTCTGTTTCATTTTACTGTGTATTGATGAATTTCCTAACATAATTTACTTGAATAAATCTTGA]

[+] EMBL CD083594             [TCGAGGCGAGAATCGCACGAGGATTTTTTACTTGATTTGCCGGACACATTATGAATCAAATAACATGGTTATCTGTATTCTATACCAAGGGATATTTCATCCTGATGCTAAGTTTCTTTACTTATATTCCTTCATTGGTATCCCTAAATGAAATGAATGTGTCAGATGAACAAATTACTGGTTATCCATCAATGAAACAAATACTCTCCAAAGTTAAAGAAGCTGAACAAATTGACGCATTGAATGATTCGAGGATTGAAACAGAACCTGATGAATTAATTATAGCCCCAGTACGATTTAGTCGTTTACGACGTTATTTTAGACATCAAAAACGTATGATGAGAGCACAATATAGAATGATGAGATTACAAAGAAGATTATACCGTCGACATTATCGTCGTCCATTTGGATATGG TTACTTTCCATAATGATTATCTTG AATCACTTAAACA CTCA TTTTACA TTATTA CTTTTTATTGATTGTAACGGTG AACTTTCTGATTGTTTATCAGTTAAGATGGTGAGTTC TATTGATGAAC TAATTCT                                                                                                                                  ]
[+] EMBL CD078636             [                                                                                                                                              CCTAAATGAAATGAATGTGTCAGATGAACAAATTACTGGTTATCCATCAATGAAACAAATACTCTCCAAAGTTAAAGAAGCTGAACAAATTGACGCATTGAATGATTCGAGGATTGAAACAGAACCTGATGAATTAATTATAGCCCCAGTACGATTTAGTCGTTTACGACGTTATTTTAGACATCAAAAACGTATGATGAGAGCACAATATAGAATGATGAGATTACAAAGAAGATTATACCGTCGACATTATCGTCGTCCATTTGGATATGG TTACTTTCCATAATGATTATCTTG AATCACTTAAACA CTCA TTTTACA TTATTA CTTTTTATTGATTGTAACGGTG AACTTTCTGATTGTTT TCAGTTAAGATGGTGAGTTC TATTGATGAAC TAATTCTATT TTCAAATTTAT TCCTCGCATAAAAGCCGCG AAAGGAAACCTGACATCTACTTTCTAATTAACTCTGTTTCATTTTACTGTGTATTGATGAATTTCCTAACATAATTTACTTGAATAAATCTTG ]
[-] EMBL CD073100             [                                                                                                                                                                          CAAATTACTGGTTATCCATCAATGAAACAAATACTCTCCAAAGTTAAAGAAGCTGAACAAATTGACGCATTGAATGATTCGAGGATTGAAACAGAACCTGATGAATTAATTATAGCCCCAGTACGATTTAGTCGTTTACGACGTTATTTTAGACATCAAAAACGTATGATGAGAGCCCAATATAGAATGATGAGATTACAAAGAAGATTATACCGTCGACATTATCGTCGTCCATTTGGATATGG TTACTTTCCATAATGATTATCTTG AATCACTTAAACA CTCA TTTTACA TTATTA CTTTTTATTGATTGTAACGGTG AACTTTTTGATTGTTT TCAGTTAAGATGGTGAGTTC TATTGATGAAC TAATTCTATT TTCAAATTTAT TCCTCGCATAAAAGCCGCG AAAGGAAACCTGACATCTACTTTTTAATTAACTCTGTTTCATTTTACTGTGTATTGATGAATTTCCTAACATAATTTACTTGAATAAATCTTGA]
[-] EMBL SMAA43810            [                                                                                                                                                                                                                                                     GATTCGAGGATTGAAACAGAACCCGATGAATTAATTATAGCCCCAGTACGATTTAGTCGTTTACGACGTTATTTTAGACATCAAAAACGTATGATGAGAGCACAATATAGAATGATGAGATTACAAAGAAGATTATACCGTCGACATTATCGTCGTCCATTTGGATATGGTTTACTTTCCATAATGATTATCTTG AATCACTTAAACACCTCAGTTTTACATTTATTACCCTTTTATTGATTGTAACGGTG AACTTTCTGATTGTTTATCAGTTAAGATGGTGAGTTCTTATTGATGAACTTAATTCTATTCTTCAAATTTATCTCCTCGCATAAAAGCCGCG AAAGGAAACCTGACATCTACTTTCTAATTAACTCTGTTTCATTTTACTGTGTATTGATGAATTTCCTAACAT ATTTACTTGAATAAATCTTGA]
[+] EMBL SM7361               [                                                                                                                                                                                                                                                                                                                                                                                                                                TTACTTTCCATAATGATTATCTGGNAATCACTTAAACA CTCA TGTTACA TTATTA CTTTTTATTGATTGTAACGGTGAAACTTTCTGATTGTTTATCAGTTAAGATGGTGAGTTC TATTGATGAAC TAATTCTATT TTCAAATTTAT TCCTCGCATAAAAGCCGCGAAAAGGAAACCTGACATCTACTTTCTAATTAACTCTGTTTCATTTTACTGTGTATTGATGAATNTCCTAACATAATTTACTTGAATAAATCT   ]




>consensus_8788#0
TCGAGGCGAGAATCGCACGAGGATTTTTTACTTGATTTGCCGGACACATTATGAATCAAA
TAACATGGTTATCTGTATTCTATACCAAGGGATATTTCATCCTGATGCTAAGTTTCTTTA
CTTATATTCCTTCATTGGTATCCCTAAATGAAATGAATGTGTCAGATGAACAAATTACTG
GTTATCCATCAATGAAACAAATACTCTCCAAAGTTAAAGAAGCTGAACAAATTGACGCAT
TGAATGATTCGAGGATTGAAACAGAACCTGATGAATTAATTATAGCCCCAGTACGATTTA
GTCGTTTACGACGTTATTTTAGACATCAAAAACGTATGATGAGAGCACAATATAGAATGA
TGAGATTACAAAGAAGATTATACCGTCGACATTATCGTCGTCCATTTGGATATGGTTACT
TTCCATAATGATTATCTTGAATCACTTAAACACTCATTTTACATTATTACTTTTTATTGA
TTGTAACGGTGAACTTTCTGATTGTTTATCAGTTAAGATGGTGAGTTCTATTGATGAACT
AATTCTATTTTCAAATTTATTCCTCGCATAAAAGCCGCGAAAGGAAACCTGACATCTACT
TTCTAATTAACTCTGTTTCATTTTACTGTGTATTGATGAATTTCCTAACATAATTTACTT
GAATAAATCTTGA

consensusID : consensus_8788#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence

                              [TTCGAGGATTGAAACAGAACCTGATGANTTAATTATAGCCCCAGCACGATTTAGNCGTTTACGACGTTATTTTAGACATCANAAACGTTTGATGAGAGCACAATNTAGAATGATGAGATNNCAAAGAAGATTATCCCGTCGACATTATCGTCGNCCANTTGGATATGGCTACTTTCCATANNGATTATCTTGGAATCACTNNANACACTCATTTTNACAATCATTNCCTNTTTATTGGATTGGNACCGGNGGAAACCTTCCTGGATTGGTNTCNTCAGGCTCAAGGTTGGNGGAGTNTC]

[+] EMBL SM369                [TTCGAGGATTGAAACAGAACCTGATGANTTAATTATAGCCCCAGCACGATTTAGNCGTTTACGACGTTATTTTAGACATCANAAACGTTTGATGAGAGCACAATNTAGAATGATGAGATNNCAAAGAAGATTATCCCGTCGACATTATCGTCGNCCANTTGGATATGGCTACTTTCCATANNGATTATCTTGGAATCACTNNANACACTCATTTTNACAATCATTNCCTNTTTATTGGATTGGNACCGGNGGAAACCTTCCTGGATTGGTNTCNTCAGGCTCAAGGTTGGNGGAGTNTC]




>consensus_8788#1
TTCGAGGATTGAAACAGAACCTGATGANTTAATTATAGCCCCAGCACGATTTAGNCGTTT
ACGACGTTATTTTAGACATCANAAACGTTTGATGAGAGCACAATNTAGAATGATGAGATN
NCAAAGAAGATTATCCCGTCGACATTATCGTCGNCCANTTGGATATGGCTACTTTCCATA
NNGATTATCTTGGAATCACTNNANACACTCATTTTNACAATCATTNCCTNTTTATTGGAT
TGGNACCGGNGGAAACCTTCCTGGATTGGTNTCNTCAGGCTCAAGGTTGGNGGAGTNTC

consensusID : consensus_8788#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 211
fasta sequence

                              [TGATTCGAGGATTGAAACAGAACCTGATGAATTAATTATAGCCCCAACATCAAAAACGTATGATGTGAGCACAATATAGAATGATGAGATTACAAAAGAAGATTTATACCCGTCGACATTATCGTCGTCCATTTGGATATGTTACTTTCCATAATGATTATCTTGAATCGACTTAAACACTCGATTTTACATTTAATTAGTTTTATTGATT]

[+] EMBL AA825088             [TGATTCGAGGATTGAAACAGAACCTGATGAATTAATTATAGCCCCAACATCAAAAACGTATGATGTGAGCACAATATAGAATGATGAGATTACAAAAGAAGATTTATACCCGTCGACATTATCGTCGTCCATTTGGATATGTTACTTTCCATAATGATTATCTTGAATCGACTTAAACACTCGATTTTACATTTAATTAGTTTTATTGATT]




>consensus_8788#2
TGATTCGAGGATTGAAACAGAACCTGATGAATTAATTATAGCCCCAACATCAAAAACGTA
TGATGTGAGCACAATATAGAATGATGAGATTACAAAAGAAGATTTATACCCGTCGACATT
ATCGTCGTCCATTTGGATATGTTACTTTCCATAATGATTATCTTGAATCGACTTAAACAC
TCGATTTTACATTTAATTAGTTTTATTGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8788#0      TCGAGGCGAGAATCGCACGAGGATTTTTTACTTGATTTGCCGGACACATTATGAATCAAA 60
consensus_8788#2      ------------------------------------------------------------
consensus_8788#1      ------------------------------------------------------------
                                                                                  

consensus_8788#0      TAACATGGTTATCTGTATTCTATACCAAGGGATATTTCATCCTGATGCTAAGTTTCTTTA 120
consensus_8788#2      ------------------------------------------------------------
consensus_8788#1      ------------------------------------------------------------
                                                                                  

consensus_8788#0      CTTATATTCCTTCATTGGTATCCCTAAATGAAATGAATGTGTCAGATGAACAAATTACTG 180
consensus_8788#2      ------------------------------------------------------------
consensus_8788#1      ------------------------------------------------------------
                                                                                  

consensus_8788#0      GTTATCCATCAATGAAACAAATACTCTCCAAAGTTAAAGAAGCTGAACAAATTGACGCAT 240
consensus_8788#2      ------------------------------------------------------------
consensus_8788#1      ------------------------------------------------------------
                                                                                  

consensus_8788#0      TGAATGATTCGAGGATTGAAACAGAACCTGATGAATTAATTATAGCCCCAGTACGATTTA 300
consensus_8788#2      ----TGATTCGAGGATTGAAACAGAACCTGATGAATTAATTATAGCCCCA---------- 46
consensus_8788#1      -------TTCGAGGATTGAAACAGAACCTGATGANTTAATTATAGCCCCAGCACGATTTA 53
                             *************************** ***************          

consensus_8788#0      GTCGTTTACGACGTTATTTTAGACATCAAAAACGTATGATGAGAGCACAATATAGAATGA 360
consensus_8788#2      ----------------------ACATCAAAAACGTATGATGTGAGCACAATATAGAATGA 84
consensus_8788#1      GNCGTTTACGACGTTATTTTAGACATCANAAACGTTTGATGAGAGCACAATNTAGAATGA 113
                                            ****** ****** ***** ********* ********

consensus_8788#0      TGAGATTACAAA-GAAGATT-ATACC-GTCGACATTATCGTCGTCCATTTGGATATGGTT 417
consensus_8788#2      TGAGATTACAAAAGAAGATTTATACCCGTCGACATTATCGTCGTCCATTTGGATATG-TT 143
consensus_8788#1      TGAGATNNCAAA-GAAGATT-ATCCC-GTCGACATTATCGTCGNCCANTTGGATATGGCT 170
                      ******  **** ******* ** ** **************** *** *********  *

consensus_8788#0      ACTTTCCATAATGATTATCTTG-AATC-ACTTAAACACTC-ATTTTACATT-ATTAC-TT 472
consensus_8788#2      ACTTTCCATAATGATTATCTTG-AATCGACTTAAACACTCGATTTTACATTTAATTA-GT 201
consensus_8788#1      ACTTTCCATANNGATTATCTTGGAATCACTNNANACACTCATTTTNACAATCATTNCCTN 230
                      **********  ********** ****     * ******  *** *** * * *     

consensus_8788#0      TTTATTG-ATTGTAACGGTGAACTTTCTGATTGTTTATCAGTTAAGATGGTGAGTTCTAT 531
consensus_8788#2      TTTATTG-ATT------------------------------------------------- 211
consensus_8788#1      TTTATTGGATTGGNACCGGNGGAAACCTTCCTGGATTGGTNTCNTCAGGCTCAAGGTTGG 290
                      ******* ***                                                 

consensus_8788#0      TGATGAACTAATTCTATTTTCAAATTTATTCCTCGCATAAAAGCCGCGAAAGGAAACCTG 591
consensus_8788#2      ------------------------------------------------------------
consensus_8788#1      NGGAGTNTC--------------------------------------------------- 299
                                                                                  

consensus_8788#0      ACATCTACTTTCTAATTAACTCTGTTTCATTTTACTGTGTATTGATGAATTTCCTAACAT 651
consensus_8788#2      ------------------------------------------------------------
consensus_8788#1      ------------------------------------------------------------
                                                                                  

consensus_8788#0      AATTTACTTGAATAAATCTTGA 673
consensus_8788#2      ----------------------
consensus_8788#1      ----------------------