cluster # 8790

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Schistosoma mansoni
cluster # 8790 cluster # 8790 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8790#0 length = 775 sequences # 6

consensus_8790#1 length = 464 sequences # 1

consensusID : consensus_8790#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 775
fasta sequence

                              [GCATGCCTTCCCGGTCCGCCATGTGCGGTCCGCGGGCAATTCGATTATCTCAGGCCAGGGA-CGATCTCAGGCCAGGGACCAGGTATGTTGTGTTTTACGGTATAAGACCGGTTGAGAAGGTGTGAGTTGTAAACCAAGTAGTAACTCAGCCGGCTGTAATGTTCTCCAAACGGGAGCAGTGGAGTGATTTATGGTTGACTCCGGAATTCGATTATTCGGTCTCTCAATAACAACAATTTCTTCC-TCGT-CCCTGGCTAAATCAATGACACGATTATCAAATAAACGCAGAACGCGACCGAAAGAATTTATCTGGAGTCTTGTCATTTCATCAACTATGGTATCAATCTTCCCATTCAATTCCAATATATTACTTTGTAAAGTTGATTGCTCCTTTTTAAGTTTATCTAAGCGTGCGTTCAGATTAAGTTCTGGAAAACTTTCGATTATTTCATCGATCAAACCGCATTCTTCCAAAGCCAAAGAAAATCTTTGCTGGATTATGTGAAGTCTAAGTTTAGGATTATTTACTTTTAGATATAATGATTATAGATTAAAATAGATATGTCCTTACCATCTTTTAATTCAGCTTGATATTTGCTTTCCACAAATGCGAAAATAACATCAAAGATATCATCAGAATCTAAAGCATCATAGATTGACTCGGTTAGTTCATCGATAAGCACTCGGTGTTCATGCTTTAGTACATTCATTATATCACATAGCAACAATGGATGCAGTTGCGAAGGTCCGTTGTAACGTGATATCTAAATACTGC]

[+] EMBL CD124483             [GCATGCCTTCCCGGTCCGCCATGTGCGGTCCGCGGGCAATTCGATTATCTCAGGCCAGGGA CGATCTCAGGCCAGGGACCAGGTATGTTGTGTTTTACGGTATAAGACCGGTTGAGAAGGTGTGAGTTGTAAACCAAGTAGTAACTCAGCCGGCTGTAATGTTCTCCAAACGGGAGCAGTGGAGTGATTTATGGTTGACTCCGGAATTCGATTATTCGGTCTCTCAATAACAACAATTTCTTCC TCGT CCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD124509             [                                                        AGGGACCGATCTCAGGCCAGGGACCAGGTATGTTGTGTTTTACGGTATAAGACCGGTTGAGAAGGTGTGAGTTGTAAACCAAGTAGTAACTCAGCCGGCTGTAATGTTCTCCAAACGGGAGCAGTGGAGTGATTTATGGTTGACTCCGGAATTCGATTATTCGGTCTCTCAATAACAACAATTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD124442             [                                                         GGGA CGATCTCAGGCCAGGGACCAGGTATGTTGTGTTTTACGGTATAAGACCGGTTGAGAAGGTGTGAGTTGTAAACCAAGTAGTAACTCAGCCGGCTGTAATGTTCTCCAAACGGGAGCAGTGGAGTGATTTATGGTTGACTCCGGAATTCGATTATTCGGTCTCTCAATAACAACAATTTCTTCCATCGTNCCCTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD124524             [                                                         GGGA CGATCTCAGGCCAGGGACCAGGTATGTTGTGTTTTACGGTATAGGACCGGTTGAGAAGGTGTGAGTTGTAAACCAAGTAGTAACTCAGCCGGCTGTAATGTTCTCCAAACGGGAGCAGTGGAGTGATTTATGGTTGACTCCGGAATTCGATAATTCGGTCTCTCAATAACAACAATTTCTTCC TCGT CCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD158837             [                                                                                                                                                                      CCAAACGGGAGCACTGGAGTGATTTATAGTTGACTCCGGAATTCGATTATTCGGTCTCTCAACAACAACAATTTCTTCC TCGT CCTTGGCTAAATCAATGACACGATTATCAAATAAACGCAGAACGCGACCGAAAGAATTTATCTGGAGTCTTGTCATTTCATCAACTATGGTATCAATCTTCCCATTCAATTCCAATATATTACTTTGTAAAGTTGATTGCTCCTTTTTAAGTTTATCTAAGCGTGCGTTCAGATTAAGTTCTGGAAAACTTTCGATTATTTCATCGATCAAACCGCATTCTTCCAAAGCCAAAGAAAATCTTTGCTGGATTATGTGAAGTCT                                                                                                                                                                                                                                                                         ]
[+] EMBL CD190101             [                                                                                                                                                                                                                                                                          TGACACGATTATCAAATAAACGCAGAACGCGACCGAAAGAATTTATCTGGAGTCTTGTCATTTCATCAACTATGGTATCAATCTTCCCATTCAATTCCAATATATTACTTTGTAAAGTTGATTGCTCCTTTTTAAGTTTATCTAAGCGTGCGTTCAGATTAAGTTCTGGAAAACTTTCGATTATTTCATCGATCAAACCGCATTCTTCCAAAGCCAAAGAAAATCTTTGCTGGATTATGTGAAGTCTAAGTTTAGGATTATTTACTTTTAGATATAATGATTATAGATTAAAATAGATATGTCCTTACCATCTTTTAATTCAGCTTGATATTTGCTTTCCACAAATGCGAAAATAACATCAAAGATATCATCAGAATCTAAAGCATCATAGATTGACTCGGTTAGTTCATCGATAAGCACTCGGTGTTCATGCTTTAGTACATTCATTATATCACATAGCAACAATGGATGCAGTTGCGAAGGTCCGTTGTAACGTGATATCTAAATACTGC]




>consensus_8790#0
GCATGCCTTCCCGGTCCGCCATGTGCGGTCCGCGGGCAATTCGATTATCTCAGGCCAGGG
ACGATCTCAGGCCAGGGACCAGGTATGTTGTGTTTTACGGTATAAGACCGGTTGAGAAGG
TGTGAGTTGTAAACCAAGTAGTAACTCAGCCGGCTGTAATGTTCTCCAAACGGGAGCAGT
GGAGTGATTTATGGTTGACTCCGGAATTCGATTATTCGGTCTCTCAATAACAACAATTTC
TTCCTCGTCCCTGGCTAAATCAATGACACGATTATCAAATAAACGCAGAACGCGACCGAA
AGAATTTATCTGGAGTCTTGTCATTTCATCAACTATGGTATCAATCTTCCCATTCAATTC
CAATATATTACTTTGTAAAGTTGATTGCTCCTTTTTAAGTTTATCTAAGCGTGCGTTCAG
ATTAAGTTCTGGAAAACTTTCGATTATTTCATCGATCAAACCGCATTCTTCCAAAGCCAA
AGAAAATCTTTGCTGGATTATGTGAAGTCTAAGTTTAGGATTATTTACTTTTAGATATAA
TGATTATAGATTAAAATAGATATGTCCTTACCATCTTTTAATTCAGCTTGATATTTGCTT
TCCACAAATGCGAAAATAACATCAAAGATATCATCAGAATCTAAAGCATCATAGATTGAC
TCGGTTAGTTCATCGATAAGCACTCGGTGTTCATGCTTTAGTACATTCATTATATCACAT
AGCAACAATGGATGCAGTTGCGAAGGTCCGTTGTAACGTGATATCTAAATACTGC

consensusID : consensus_8790#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [GACACGATTATCAAATAAACGCAGAACGCGACCGAAAGAATTTATCTGGAGTCTTGTCATTTCATCAACTATGGTATCAATCTTTCCATTCAATTCCAATATATTACTTTGTAAAGTTGATTGCTCCTTTTTAAGTTTATCTAAGCGTGCGTTCAGATTAAGTTCTGGAAAACTTTCGATTATTTCATCGATCAAACCGCATTCTTCCAAAGCCAAAGAAAATCTTTGCTGGATTATGTGAAGTCTAAGTTTAGGATTATTTACATCTTTTAATTCAGCTTGATATTTGCTTTCCACAAATGCGAAAATAACATCAAAGATATCATCAGAATCTAAAGCATCATAGATTGACTCGGTTAGTTCATCGATAAGCACTCGGTGCTCATGCTTTAATACATTCATTATATCACATAGCAACAATGGATGCAGTTGCGAAGGTCCGTTGTAACGTGATATCTAAATAC]

[-] EMBL CD133123             [GACACGATTATCAAATAAACGCAGAACGCGACCGAAAGAATTTATCTGGAGTCTTGTCATTTCATCAACTATGGTATCAATCTTTCCATTCAATTCCAATATATTACTTTGTAAAGTTGATTGCTCCTTTTTAAGTTTATCTAAGCGTGCGTTCAGATTAAGTTCTGGAAAACTTTCGATTATTTCATCGATCAAACCGCATTCTTCCAAAGCCAAAGAAAATCTTTGCTGGATTATGTGAAGTCTAAGTTTAGGATTATTTACATCTTTTAATTCAGCTTGATATTTGCTTTCCACAAATGCGAAAATAACATCAAAGATATCATCAGAATCTAAAGCATCATAGATTGACTCGGTTAGTTCATCGATAAGCACTCGGTGCTCATGCTTTAATACATTCATTATATCACATAGCAACAATGGATGCAGTTGCGAAGGTCCGTTGTAACGTGATATCTAAATAC]




>consensus_8790#1
GACACGATTATCAAATAAACGCAGAACGCGACCGAAAGAATTTATCTGGAGTCTTGTCAT
TTCATCAACTATGGTATCAATCTTTCCATTCAATTCCAATATATTACTTTGTAAAGTTGA
TTGCTCCTTTTTAAGTTTATCTAAGCGTGCGTTCAGATTAAGTTCTGGAAAACTTTCGAT
TATTTCATCGATCAAACCGCATTCTTCCAAAGCCAAAGAAAATCTTTGCTGGATTATGTG
AAGTCTAAGTTTAGGATTATTTACATCTTTTAATTCAGCTTGATATTTGCTTTCCACAAA
TGCGAAAATAACATCAAAGATATCATCAGAATCTAAAGCATCATAGATTGACTCGGTTAG
TTCATCGATAAGCACTCGGTGCTCATGCTTTAATACATTCATTATATCACATAGCAACAA
TGGATGCAGTTGCGAAGGTCCGTTGTAACGTGATATCTAAATAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8790#0      GCATGCCTTCCCGGTCCGCCATGTGCGGTCCGCGGGCAATTCGATTATCTCAGGCCAGGG 60
consensus_8790#1      ------------------------------------------------------------
                                                                                  

consensus_8790#0      ACGATCTCAGGCCAGGGACCAGGTATGTTGTGTTTTACGGTATAAGACCGGTTGAGAAGG 120
consensus_8790#1      ------------------------------------------------------------
                                                                                  

consensus_8790#0      TGTGAGTTGTAAACCAAGTAGTAACTCAGCCGGCTGTAATGTTCTCCAAACGGGAGCAGT 180
consensus_8790#1      ------------------------------------------------------------
                                                                                  

consensus_8790#0      GGAGTGATTTATGGTTGACTCCGGAATTCGATTATTCGGTCTCTCAATAACAACAATTTC 240
consensus_8790#1      ------------------------------------------------------------
                                                                                  

consensus_8790#0      TTCCTCGTCCCTGGCTAAATCAATGACACGATTATCAAATAAACGCAGAACGCGACCGAA 300
consensus_8790#1      ------------------------GACACGATTATCAAATAAACGCAGAACGCGACCGAA 36
                                              ************************************

consensus_8790#0      AGAATTTATCTGGAGTCTTGTCATTTCATCAACTATGGTATCAATCTTCCCATTCAATTC 360
consensus_8790#1      AGAATTTATCTGGAGTCTTGTCATTTCATCAACTATGGTATCAATCTTTCCATTCAATTC 96
                      ************************************************ ***********

consensus_8790#0      CAATATATTACTTTGTAAAGTTGATTGCTCCTTTTTAAGTTTATCTAAGCGTGCGTTCAG 420
consensus_8790#1      CAATATATTACTTTGTAAAGTTGATTGCTCCTTTTTAAGTTTATCTAAGCGTGCGTTCAG 156
                      ************************************************************

consensus_8790#0      ATTAAGTTCTGGAAAACTTTCGATTATTTCATCGATCAAACCGCATTCTTCCAAAGCCAA 480
consensus_8790#1      ATTAAGTTCTGGAAAACTTTCGATTATTTCATCGATCAAACCGCATTCTTCCAAAGCCAA 216
                      ************************************************************

consensus_8790#0      AGAAAATCTTTGCTGGATTATGTGAAGTCTAAGTTTAGGATTATTTACTTTTAGATATAA 540
consensus_8790#1      AGAAAATCTTTGCTGGATTATGTGAAGTCTAAGTTTAGGATTATTTAC------------ 264
                      ************************************************            

consensus_8790#0      TGATTATAGATTAAAATAGATATGTCCTTACCATCTTTTAATTCAGCTTGATATTTGCTT 600
consensus_8790#1      --------------------------------ATCTTTTAATTCAGCTTGATATTTGCTT 292
                                                      ****************************

consensus_8790#0      TCCACAAATGCGAAAATAACATCAAAGATATCATCAGAATCTAAAGCATCATAGATTGAC 660
consensus_8790#1      TCCACAAATGCGAAAATAACATCAAAGATATCATCAGAATCTAAAGCATCATAGATTGAC 352
                      ************************************************************

consensus_8790#0      TCGGTTAGTTCATCGATAAGCACTCGGTGTTCATGCTTTAGTACATTCATTATATCACAT 720
consensus_8790#1      TCGGTTAGTTCATCGATAAGCACTCGGTGCTCATGCTTTAATACATTCATTATATCACAT 412
                      ***************************** ********** *******************

consensus_8790#0      AGCAACAATGGATGCAGTTGCGAAGGTCCGTTGTAACGTGATATCTAAATACTGC 775
consensus_8790#1      AGCAACAATGGATGCAGTTGCGAAGGTCCGTTGTAACGTGATATCTAAATAC--- 464
                      ****************************************************