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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 928 fasta sequence
[CTCGAGGGCCAAAATTCGGCACGAGGCTTATGTGGTATGGGGTTATCCTTCTCTGCAAGTGGTGCGCGATATGGTTATGAAGCGTGGGCGTACTATGCTTGGTAGACACAAACATTCAATCGATAACAAAATCATTGAAGAGAAATTAGGTCACTGTGGGATTTTGTGTATAGAAGACATTATCCACGAACTTGTAACTATTGGTCCAAACTTTATCGCCGTTCAGCGCTTTTTATGTCCATTCAAACTTATGTCATCCAGTCGTGATTGGATGTCAGGCTCACGGCGCTGTCACGCTCGTGTTGATTCTCTAACGGGGTTTCGAGAAGAACAATTAAATGAAATGATTCGTAGAATGATATGATTGTGTAGATAATGCATGTATAGATACTATCCTCGGTTATTACTTTTTTTGCATATATTACATGAGTATACAAATGTGTCTTGTTTGGAAATTTCTGCAACTGTGCTACTCTTTTGTTTACTAACAAAGTTTTTGCACATTGAAGAATTATTATCCATTGTCATGTCAATCGATTCGCAGTATTACCTTTGTATTTATTGGTTTTCCAACTATTTACATCTTAAATGAACTTAGTGGACCATTGAAAAGTCCTTTATATATTTATTAACATCGGCAGCGAGCATTAACTTTGTCTACAGAAATAAGTATGTGCTAGCTGAAGC-TACATAACAATGTCTNTTTCANAACACTAC-ATNATTTGCCATAACGAGTACTCAATATTATTTAATTTGCAGTCACAAAAAAAAAAGATTTTCATGTATTCGGNAAACTAGCCTATACTTTCAGTATAATTGATCATGAATGTCAAACTCATTGCATCATTCTTTCAATAATCGCGNTATTGTACATAATTGCAAAACTGGACTTTTTGCGAATTTGGGTTTTAATAAGTTTGGGAAATGA]
[+] EMBL CD080674 [CTCGAGGGCCAAAATTCGGCACGAGGCTTATGTGGTATGGGGTTATCCTTCTCTGCAAGTGGTGCGCGATATGGTTATGAAGCGTGGGCGTACTATGCTTGGTAGACACAAACATTCAATCGATAACAAAATCATTGAAGAGAAATTAGGTCACTGTGGGATTTTGTGTATAGAAGACATTATCCACGAACTTGTAACTATTGGTCCAAACTTTATCGCCGTTCAGCGCTTTTTATGTCCATTCAAACTTATGTCATCCAGTCGTGATTGGATGTCAGGCTCACGGCGCTGTCACGCTCGTGTTGATTCTCTAACGGGGTTTCGAGAAGAACAATTAAATGAAATGATTCGTAGAATGATATGATTGTGTAGATAATGCATGTATAGATACTATCCTCGGTTATTACTTTTTTTGCATATATTACATGAGTATACAAATGTGTCTTGTTTGGAAATTTCTGCAACTGTGCTACTCTTTTGTTTACTAACAAAGTTTTTGCACATTGAAGAATTATTATCCATTGTCATGTCAATCGATTCGCAGTATTACCTTTGTATTTATTGGTTTTCCAACTATTTACATCTTAAATGAACTTAGTGGACCATTGAAAAGTCCTTTATATATTTATTAACATCGGCAGCGAGCATTAACTTTGTCTACAGAAATAAGTATGTGCTAGCTGAAGC TACATAACAATGTCTNTTTCANAACACTAC ATNATTTGCCATAACGAGTACTCAATATTATTTAATTTGCAGTCACAAAAAAAAAAGATTTTCATGTATTCGGNAAACTAGCCTATACTTTCAGTATAATTGATCATGAATGTCAAACTCATTGCATCATTCTTTCAATAATCGCGNTATTGTACATAATTGCAAAACTGGACTTTTTGCGAATTTGGGTTTTAATAAGTTTGGGAAATGA]
[-] EMBL CD074597 [ GTCACGCTCGTGTTGATTCTCTAACGGGGTTTCGAGAAGAACAATTAAATGAAATGATTCGTAGAATGATATGATTGTGTAGATAATGCATGTATAGATACTATCCTCGGTTATTACTTTTTTTGCATATATTACATGAGTATACAAATGTGTCTTGTTTGGAAATTTCTGCAACTGTGCTACTCTTTTGTTTACTAACAAAGTTTTTGCACATTGAAGAATTATTATCCATTGTCATGTCAATCGATTCGCAGTATTACCTTTGTATTTATTGGTTTTCCAACTATTTACATCTTAAATGAACTTAGTGGACCATTGAAAAGTCCTTTATATATTTATTAACATCGGCAGCGAGCATTAACTTTGTCTACAGAAATAAGTATGTGCTAGCTGAAGCTTACATAACAATGTCTTTTTCAAAACACTACAATAATTTGCCATAACGAGTACTCAATATTATTTAATT ]
consensusID : consensus_8798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 691 fasta sequence
[AATTCAGGCACCGAGNNGCCTATCGAACTCAATACAGTTCCTGTTACACTTCTTAAAAGGAGAAAAAGGGTTAGCCGGGATATAATCAAACAACAGCGTCTGCGTTCTGAGGAGTTACGTAAACGTGCCCGGAAACGCAGAAGTCTTATCAAACCTCCGATCCGTTTTATAAAGACGGGCCTCAGGCGGTCGTACGATGAGTTACGTTTGCAGCGGATCACTAAACGCAAATCTCCGTTTTTAACATCTGATCAACCAAGACTGGGTATTGTAATTCGGTTAAAGGACGATGAAGAACAACTTGCAGATGTTTGTAAAGATGTATTCCGATTACTTCGTCTTGATACCCTCAATCAAGCGGTTTTCATTAAAATTACAAAGGCTACTCTTAGTCTGTTGAATATTGTTTCACCTTATGTGGTATGGGGTTATCCTTCTCTGCAAGTGGTGCGCGATATGGTTATGAAGCGTGGGCGTACTATGCTTGGTAGACACAAACATTCAATCGATAACAAAATCATTGAAGAGAAATTAGGTCACTGTGGGATTTTGTGTATAGAAGACATTATCCACGAACTTGTAACTATTGGTCCAAACTTTATCGCCGTTCAGCGCTTTTTATGTCCATTCAAACTTATGTCATCCAGTCGTGATTGGATGTCAGGCTCACGGCGCTGTCACGCTCGTGTTG]
[+] EMBL CD077901 [AATTCAGGCACCGAGNNGCCTATCGAACTCAATACAGTTCCTGTTACACTTCTTAAAAGGAGAAAAAGGGTTAGCCGGGATATAATCAAACAACAGCGTCTGCGTTCTGAGGAGTTACGTAAACGTGCCCGGAAACGCAGAAGTCTTATCAAACCTCCGATCCGTTTTATAAAGACGGGCCTCAGGCGGTCGTACGATGAGTTACGTTTGCAGCGGATCACTAAACGCAAATCTCCGTTTTTAACATCTGATCAACCAAGACTGGGTATTGTAATTCGGTTAAAGGACGATGAAGAACAACTTGCAGATGTTTGTAAAGATGTATTCCGATTACTTCGTCTTGATAC ]
[+] EMBL CD146626 [ GCGGTCGTACGATGAGTTACGTTTGCAGCGGATCACTAAACGCAAATCTCCGTTTTTAACATCTGATCAACCAAGACTGGGTATTGTAATTCGGTTAAAGGACGATGAAGAACAACTTGCAGATGTTTGTAAAGATGTATTCCGATTACTTCGTCTTGATACCCTCAATCAAGCGGTTTTCATTAAAATTACAAAGGCTACTCTTAGTCTGTTGAATATTGTTTCACCTTATGTGGTATGGGGTTATCCTTCTCTGCAAGTGGTGCGCGATATGGTTATGAAGCGTGGGCGTACTATGCTTGGTAGACACAAACATTCAATCGATAACAAAATCATTGAAGAGAAATTAGGTCACTGTGGGATTTTGTGTATAGAAGACATTATCCACGAACTTGTAACTATTGGTCCAAACTTTATCGCCGTTCAGCGCTTTTTATGTCCATTCAAACTTATGTCATCCAGTCGTGATTGGATGTCAGGCTCACGGCGCTGTCACGCTCGTGTTG]
[+] EMBL CD199597 [ CGATGAGTTACGTTTGCAGCGGATCACTAAACGCAAATCTCCGTTTTTAACATCTGATCAACCAAGACTGGGTATTGTAATTCGGTTAAAGGACGATGAAGAACAACTTGCAGATGTTTGTAAAGATGTATTCCGATTACTTCGTCTTGATACCCTCAATCAAGCGGTTTTCATTAAAATTACAAAGGCTACTCTTAGTCTGTTGAATATTGTTTCACCTTATGTGGTATGGGGTTATCCTTCTCTGCAAGTGGTGCGCGATATGGTTATGAAGCGTGGGCGTACTATGCTTGGTAGACACAAACATTCAATCGATAACAAAATCATTGAAGAGAAAT ]
consensusID : consensus_8798#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 475 fasta sequence
[GCGGGTGTTCTGGATCTATTCGGTACAAGTCATGGACGAAGACAAGCCTATCGAACTCAATACAGTTCCTGTTACACTTCTTAAAAGGAGAAAAAGGGTTAGCCGGGATATAATCAAACAACAGCGTCTGCGTTCTGAGGAGTTACGTAAACGTGCCCGGAAACGCAGAAGTCTTATCAAACCTCCGATCCGTTTTATAAAGACGGGCCTCAGGCGGTCGTACGATGAGTTACGTTTGCAGCGGATCACTAAACGCAAATCTCCGTTTTTAACATCTGATCAACCAAGACTGGGTATTGTAATTCGGTTAAAGGACGATGAAGAACAACTTGCAGATGTTTGTAAAGATGTATTCCGATTACCTCGTCTTGATACCCTCAATCAAGCGGTTTTCATTAAAATTACAAACGCTACTCTTAGTCTGTTGAATATTGTTTCACCTTATGTGGTATGGGGTTATCCTTCTCTGCAAGTG]
[+] EMBL AI067697 [GCGGGTGTTCTGGATCTATTCGGTACAAGTCATGGACGAAGACAAGCCTATCGAACTCAATACAGTTCCTGTTACACTTCTTAAAAGGAGAAAAAGGGTTAGCCGGGATATAATCAAACAACAGCGTCTGCGTTCTGAGGAGTTACGTAAACGTGCCCGGAAACGCAGAAGTCTTATCAAACCTCCGATCCGTTTTATAAAGACGGGCCTCAGGCGGTCGTACGATGAGTTACGTTTGCAGCGGATCACTAAACGCAAATCTCCGTTTTTAACATCTGATCAACCAAGACTGGGTATTGTAATTCGGTTAAAGGACGATGAAGAACAACTTGCAGATGTTTGTAAAGATGTATTCCGATTACCTCGTCTTGATACCCTCAATCAAGCGGTTTTCA ]
[+] EMBL AI067408 [ ATTCGGTACAAGTCATGGACGAAGACAAGCCTATCGAACTCAATACAGTTCCTGTTACACTTCTTAAAAGGAGAAAAAGGGTTAGCCGGGATATAATCAAACAACAGCGTCTGCGTTCTGAGGAGTTACGTAAACGTGCCCGGAAACGCAGAAGTCTTATCAAACCTCCGATCCGTTTTATAAAGACGGGCCTCAGGCGGTCGTACGATGAGTTACGTTTGCAGCGGATCACTAAACGCAAATCTCCGTTTTTAACATCTGATCAACCAAGACTGGGTATTGTAATTCGGTTAAAGGACGATGACGAACAACTTGCACATGTTTGTAAAGATGTATTCCGATTACTTCGTCTTGATACCCTCAATCAAGCGGTTTTCATTAAAATTACAAACGCTACTCTTAGTCTGTTGAATATTGTTTCACCTTATGTGGTATGGGGTTATCCTTCTCTGCAAGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8798#1 ------------------------------------------------------------
consensus_8798#2 ------------------------------------------------------------
consensus_8798#0 CTCGAGGGCCAAAATTCGGCACGAGGCTTATGTGGTATGGGGTTATCCTTCTCTGCAAGT 60
consensus_8798#1 -------------------------------------------------AATTCAGGCA- 10
consensus_8798#2 -----------------------GCGGGTGTTCTGGATCTATTCGGTACAAGTCATGGA- 36
consensus_8798#0 GGTGCGCGATATGGTTATGAAGCGTGGGCGTACTATGCTTGGTAGACACAAACATTCAAT 120
** *
consensus_8798#1 CCGAGN--NGCCTATCGAACTCAATACAGTTC-CTGTTACACTTCTTAAA-AGGAGAAA- 65
consensus_8798#2 CGAAGACAAGCCTATCGAACTCAATACAGTTC-CTGTTACACTTCTTAAA-AGGAGAAA- 93
consensus_8798#0 CGATAACAAAATCATTGAAGAGAAATTAGGTCACTGTGGGATTTTGTGTATAGAAGACAT 180
* ** *** ** ** ** **** * ** * * ** *** *
consensus_8798#1 -----AAGGGTTAGCCGGGATATAATCAAACAACAGCG----TCTGCGTTCTGAGGAGTT 116
consensus_8798#2 -----AAGGGTTAGCCGGGATATAATCAAACAACAGCG----TCTGCGTTCTGAGGAGTT 144
consensus_8798#0 TATCCACGAACTTGTAACTATTGGTCCAAACTTTATCGCCGTTCAGCGCTTTTTATGTCC 240
* * * * ** ***** * ** ** *** * *
consensus_8798#1 ACGTAAACGTGCCCGGAAACGCAGAAGTCT--TATCAAACCTCCGAT-CCGTTTTA-TAA 172
consensus_8798#2 ACGTAAACGTGCCCGGAAACGCAGAAGTCT--TATCAAACCTCCGAT-CCGTTTTA-TAA 200
consensus_8798#0 ATTCAAACTTATGTCATCCAGTCGTGATTGGATGTCAGGCTCACGGCGCTGTCACGCTCG 300
* **** * * * * * *** * ** * ** *
consensus_8798#1 AGACGGGCCTCAGGCGGTCGTACGATGAGTTACGTT---TGCAGCGGATCACTAAACG-C 228
consensus_8798#2 AGACGGGCCTCAGGCGGTCGTACGATGAGTTACGTT---TGCAGCGGATCACTAAACG-C 256
consensus_8798#0 TGTTGATTCTCTAACGGGGTTTCGAGAAGAACAATTAAATGAAATGATTCGTAGAATGAT 360
* * *** *** * *** ** ** ** * * ** ** *
consensus_8798#1 AAATCTCCGTTTTTAACATCTGATCAACCAAGACTGGGTATTGTAATTCGGTTAAAGGAC 288
consensus_8798#2 AAATCTCCGTTTTTAACATCTGATCAACCAAGACTGGGTATTGTAATTCGGTTAAAGGAC 316
consensus_8798#0 ATGATTGTGTAGATAATGCATGTATAGATACTATCCTCGGTTATTACTTTTTTTGCATAT 420
* * ** *** ** * * * ** * * * ** *
consensus_8798#1 GATGAAGAACAACTTGCAGATGT-TTGTAAAGATGTATTC-CGATTACTTCGTCTTGATA 346
consensus_8798#2 GATGAAGAACAACTTGCAGATGT-TTGTAAAGATGTATTC-CGATTACCTCGTCTTGATA 374
consensus_8798#0 ATTACATGAGTATACAAATGTGTCTTGTTTGGAAATTTCTGCAACTGTGCTACTCTTTTG 480
* * * * * *** **** ** * * * * * * *
consensus_8798#1 CCCTCAATCAAGCGGTTTTCA--TTAAAATTACAAAGGCTACTCTTA-GTCTGTTGAAT- 402
consensus_8798#2 CCCTCAATCAAGCGGTTTTCA--TTAAAATTACAAACGCTACTCTTA-GTCTGTTGAAT- 430
consensus_8798#0 TTTACTAACAAAGTTTTTGCACATTGAAGAATTATTATCCATTGTCATGTCAATCGATTC 540
* * *** *** ** ** ** * * * * * * *** * ** *
consensus_8798#1 ATTGTTTCACCTTATGTGGTATGGGGTTATCCTTCTCTGCAAGTGGTGCGCGATATGGTT 462
consensus_8798#2 ATTGTTTCACCTTATGTGGTATGGGGTTATCCTTCTCTGCAAGTG--------------- 475
consensus_8798#0 GCAGTATTACCTT-TGTATTTATTGGTTTTCCAACTATTTACATCTTAAATGAACTTAGT 599
** * ***** *** * **** *** ** * * *
consensus_8798#1 ATGAAGCGTGGGCGTACTATGCTTGGTAGACACAAACATTCAATCGATAACAAAATCATT 522
consensus_8798#2 ------------------------------------------------------------
consensus_8798#0 GGACCATTGAAAAGTCCTTTATATATTTATTAACATCGGCAGCGAGCATTAACTTTGTCT 659
consensus_8798#1 GAAGAGAAATTAGGTCACTGTGGGATTTTGTGTATAGAAGACATTATCCACGAACTTGTA 582
consensus_8798#2 ------------------------------------------------------------
consensus_8798#0 ACAGAAATAAGTATGTGCTAGCTGAAGCTACATAACAATGTCTNTTTCANAACACTACAT 719
consensus_8798#1 ACTATTGGTCCAAACTTTATCGCCGTTCAGCGCTTTTTATGTCCATTCAAACTTATGTCA 642
consensus_8798#2 ------------------------------------------------------------
consensus_8798#0 NATTTGCCATAACGAGTACTCAATATTATTTAATTTGCAGTCACAAAAAAAAAAGATTTT 779
consensus_8798#1 TCCAGTCGTGATTGGATGTCAGGCTCACGGCGCTGTCACGCTCGTGTTG----------- 691
consensus_8798#2 ------------------------------------------------------------
consensus_8798#0 CATGTATTCGGNAAACTAGCCTATACTTTCAGTATAATTGATCATGAATGTCAAACTCAT 839
consensus_8798#1 ------------------------------------------------------------
consensus_8798#2 ------------------------------------------------------------
consensus_8798#0 TGCATCATTCTTTCAATAATCGCGNTATTGTACATAATTGCAAAACTGGACTTTTTGCGA 899
consensus_8798#1 -----------------------------
consensus_8798#2 -----------------------------
consensus_8798#0 ATTTGGGTTTTAATAAGTTTGGGAAATGA 928
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||