These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 928 fasta sequence [CTCGAGGGCCAAAATTCGGCACGAGGCTTATGTGGTATGGGGTTATCCTTCTCTGCAAGTGGTGCGCGATATGGTTATGAAGCGTGGGCGTACTATGCTTGGTAGACACAAACATTCAATCGATAACAAAATCATTGAAGAGAAATTAGGTCACTGTGGGATTTTGTGTATAGAAGACATTATCCACGAACTTGTAACTATTGGTCCAAACTTTATCGCCGTTCAGCGCTTTTTATGTCCATTCAAACTTATGTCATCCAGTCGTGATTGGATGTCAGGCTCACGGCGCTGTCACGCTCGTGTTGATTCTCTAACGGGGTTTCGAGAAGAACAATTAAATGAAATGATTCGTAGAATGATATGATTGTGTAGATAATGCATGTATAGATACTATCCTCGGTTATTACTTTTTTTGCATATATTACATGAGTATACAAATGTGTCTTGTTTGGAAATTTCTGCAACTGTGCTACTCTTTTGTTTACTAACAAAGTTTTTGCACATTGAAGAATTATTATCCATTGTCATGTCAATCGATTCGCAGTATTACCTTTGTATTTATTGGTTTTCCAACTATTTACATCTTAAATGAACTTAGTGGACCATTGAAAAGTCCTTTATATATTTATTAACATCGGCAGCGAGCATTAACTTTGTCTACAGAAATAAGTATGTGCTAGCTGAAGC-TACATAACAATGTCTNTTTCANAACACTAC-ATNATTTGCCATAACGAGTACTCAATATTATTTAATTTGCAGTCACAAAAAAAAAAGATTTTCATGTATTCGGNAAACTAGCCTATACTTTCAGTATAATTGATCATGAATGTCAAACTCATTGCATCATTCTTTCAATAATCGCGNTATTGTACATAATTGCAAAACTGGACTTTTTGCGAATTTGGGTTTTAATAAGTTTGGGAAATGA] [+] EMBL CD080674 [CTCGAGGGCCAAAATTCGGCACGAGGCTTATGTGGTATGGGGTTATCCTTCTCTGCAAGTGGTGCGCGATATGGTTATGAAGCGTGGGCGTACTATGCTTGGTAGACACAAACATTCAATCGATAACAAAATCATTGAAGAGAAATTAGGTCACTGTGGGATTTTGTGTATAGAAGACATTATCCACGAACTTGTAACTATTGGTCCAAACTTTATCGCCGTTCAGCGCTTTTTATGTCCATTCAAACTTATGTCATCCAGTCGTGATTGGATGTCAGGCTCACGGCGCTGTCACGCTCGTGTTGATTCTCTAACGGGGTTTCGAGAAGAACAATTAAATGAAATGATTCGTAGAATGATATGATTGTGTAGATAATGCATGTATAGATACTATCCTCGGTTATTACTTTTTTTGCATATATTACATGAGTATACAAATGTGTCTTGTTTGGAAATTTCTGCAACTGTGCTACTCTTTTGTTTACTAACAAAGTTTTTGCACATTGAAGAATTATTATCCATTGTCATGTCAATCGATTCGCAGTATTACCTTTGTATTTATTGGTTTTCCAACTATTTACATCTTAAATGAACTTAGTGGACCATTGAAAAGTCCTTTATATATTTATTAACATCGGCAGCGAGCATTAACTTTGTCTACAGAAATAAGTATGTGCTAGCTGAAGC TACATAACAATGTCTNTTTCANAACACTAC ATNATTTGCCATAACGAGTACTCAATATTATTTAATTTGCAGTCACAAAAAAAAAAGATTTTCATGTATTCGGNAAACTAGCCTATACTTTCAGTATAATTGATCATGAATGTCAAACTCATTGCATCATTCTTTCAATAATCGCGNTATTGTACATAATTGCAAAACTGGACTTTTTGCGAATTTGGGTTTTAATAAGTTTGGGAAATGA] [-] EMBL CD074597 [ GTCACGCTCGTGTTGATTCTCTAACGGGGTTTCGAGAAGAACAATTAAATGAAATGATTCGTAGAATGATATGATTGTGTAGATAATGCATGTATAGATACTATCCTCGGTTATTACTTTTTTTGCATATATTACATGAGTATACAAATGTGTCTTGTTTGGAAATTTCTGCAACTGTGCTACTCTTTTGTTTACTAACAAAGTTTTTGCACATTGAAGAATTATTATCCATTGTCATGTCAATCGATTCGCAGTATTACCTTTGTATTTATTGGTTTTCCAACTATTTACATCTTAAATGAACTTAGTGGACCATTGAAAAGTCCTTTATATATTTATTAACATCGGCAGCGAGCATTAACTTTGTCTACAGAAATAAGTATGTGCTAGCTGAAGCTTACATAACAATGTCTTTTTCAAAACACTACAATAATTTGCCATAACGAGTACTCAATATTATTTAATT ] consensusID : consensus_8798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 691 fasta sequence [AATTCAGGCACCGAGNNGCCTATCGAACTCAATACAGTTCCTGTTACACTTCTTAAAAGGAGAAAAAGGGTTAGCCGGGATATAATCAAACAACAGCGTCTGCGTTCTGAGGAGTTACGTAAACGTGCCCGGAAACGCAGAAGTCTTATCAAACCTCCGATCCGTTTTATAAAGACGGGCCTCAGGCGGTCGTACGATGAGTTACGTTTGCAGCGGATCACTAAACGCAAATCTCCGTTTTTAACATCTGATCAACCAAGACTGGGTATTGTAATTCGGTTAAAGGACGATGAAGAACAACTTGCAGATGTTTGTAAAGATGTATTCCGATTACTTCGTCTTGATACCCTCAATCAAGCGGTTTTCATTAAAATTACAAAGGCTACTCTTAGTCTGTTGAATATTGTTTCACCTTATGTGGTATGGGGTTATCCTTCTCTGCAAGTGGTGCGCGATATGGTTATGAAGCGTGGGCGTACTATGCTTGGTAGACACAAACATTCAATCGATAACAAAATCATTGAAGAGAAATTAGGTCACTGTGGGATTTTGTGTATAGAAGACATTATCCACGAACTTGTAACTATTGGTCCAAACTTTATCGCCGTTCAGCGCTTTTTATGTCCATTCAAACTTATGTCATCCAGTCGTGATTGGATGTCAGGCTCACGGCGCTGTCACGCTCGTGTTG] [+] EMBL CD077901 [AATTCAGGCACCGAGNNGCCTATCGAACTCAATACAGTTCCTGTTACACTTCTTAAAAGGAGAAAAAGGGTTAGCCGGGATATAATCAAACAACAGCGTCTGCGTTCTGAGGAGTTACGTAAACGTGCCCGGAAACGCAGAAGTCTTATCAAACCTCCGATCCGTTTTATAAAGACGGGCCTCAGGCGGTCGTACGATGAGTTACGTTTGCAGCGGATCACTAAACGCAAATCTCCGTTTTTAACATCTGATCAACCAAGACTGGGTATTGTAATTCGGTTAAAGGACGATGAAGAACAACTTGCAGATGTTTGTAAAGATGTATTCCGATTACTTCGTCTTGATAC ] [+] EMBL CD146626 [ GCGGTCGTACGATGAGTTACGTTTGCAGCGGATCACTAAACGCAAATCTCCGTTTTTAACATCTGATCAACCAAGACTGGGTATTGTAATTCGGTTAAAGGACGATGAAGAACAACTTGCAGATGTTTGTAAAGATGTATTCCGATTACTTCGTCTTGATACCCTCAATCAAGCGGTTTTCATTAAAATTACAAAGGCTACTCTTAGTCTGTTGAATATTGTTTCACCTTATGTGGTATGGGGTTATCCTTCTCTGCAAGTGGTGCGCGATATGGTTATGAAGCGTGGGCGTACTATGCTTGGTAGACACAAACATTCAATCGATAACAAAATCATTGAAGAGAAATTAGGTCACTGTGGGATTTTGTGTATAGAAGACATTATCCACGAACTTGTAACTATTGGTCCAAACTTTATCGCCGTTCAGCGCTTTTTATGTCCATTCAAACTTATGTCATCCAGTCGTGATTGGATGTCAGGCTCACGGCGCTGTCACGCTCGTGTTG] [+] EMBL CD199597 [ CGATGAGTTACGTTTGCAGCGGATCACTAAACGCAAATCTCCGTTTTTAACATCTGATCAACCAAGACTGGGTATTGTAATTCGGTTAAAGGACGATGAAGAACAACTTGCAGATGTTTGTAAAGATGTATTCCGATTACTTCGTCTTGATACCCTCAATCAAGCGGTTTTCATTAAAATTACAAAGGCTACTCTTAGTCTGTTGAATATTGTTTCACCTTATGTGGTATGGGGTTATCCTTCTCTGCAAGTGGTGCGCGATATGGTTATGAAGCGTGGGCGTACTATGCTTGGTAGACACAAACATTCAATCGATAACAAAATCATTGAAGAGAAAT ] consensusID : consensus_8798#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 475 fasta sequence [GCGGGTGTTCTGGATCTATTCGGTACAAGTCATGGACGAAGACAAGCCTATCGAACTCAATACAGTTCCTGTTACACTTCTTAAAAGGAGAAAAAGGGTTAGCCGGGATATAATCAAACAACAGCGTCTGCGTTCTGAGGAGTTACGTAAACGTGCCCGGAAACGCAGAAGTCTTATCAAACCTCCGATCCGTTTTATAAAGACGGGCCTCAGGCGGTCGTACGATGAGTTACGTTTGCAGCGGATCACTAAACGCAAATCTCCGTTTTTAACATCTGATCAACCAAGACTGGGTATTGTAATTCGGTTAAAGGACGATGAAGAACAACTTGCAGATGTTTGTAAAGATGTATTCCGATTACCTCGTCTTGATACCCTCAATCAAGCGGTTTTCATTAAAATTACAAACGCTACTCTTAGTCTGTTGAATATTGTTTCACCTTATGTGGTATGGGGTTATCCTTCTCTGCAAGTG] [+] EMBL AI067697 [GCGGGTGTTCTGGATCTATTCGGTACAAGTCATGGACGAAGACAAGCCTATCGAACTCAATACAGTTCCTGTTACACTTCTTAAAAGGAGAAAAAGGGTTAGCCGGGATATAATCAAACAACAGCGTCTGCGTTCTGAGGAGTTACGTAAACGTGCCCGGAAACGCAGAAGTCTTATCAAACCTCCGATCCGTTTTATAAAGACGGGCCTCAGGCGGTCGTACGATGAGTTACGTTTGCAGCGGATCACTAAACGCAAATCTCCGTTTTTAACATCTGATCAACCAAGACTGGGTATTGTAATTCGGTTAAAGGACGATGAAGAACAACTTGCAGATGTTTGTAAAGATGTATTCCGATTACCTCGTCTTGATACCCTCAATCAAGCGGTTTTCA ] [+] EMBL AI067408 [ ATTCGGTACAAGTCATGGACGAAGACAAGCCTATCGAACTCAATACAGTTCCTGTTACACTTCTTAAAAGGAGAAAAAGGGTTAGCCGGGATATAATCAAACAACAGCGTCTGCGTTCTGAGGAGTTACGTAAACGTGCCCGGAAACGCAGAAGTCTTATCAAACCTCCGATCCGTTTTATAAAGACGGGCCTCAGGCGGTCGTACGATGAGTTACGTTTGCAGCGGATCACTAAACGCAAATCTCCGTTTTTAACATCTGATCAACCAAGACTGGGTATTGTAATTCGGTTAAAGGACGATGACGAACAACTTGCACATGTTTGTAAAGATGTATTCCGATTACTTCGTCTTGATACCCTCAATCAAGCGGTTTTCATTAAAATTACAAACGCTACTCTTAGTCTGTTGAATATTGTTTCACCTTATGTGGTATGGGGTTATCCTTCTCTGCAAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8798#1 ------------------------------------------------------------ consensus_8798#2 ------------------------------------------------------------ consensus_8798#0 CTCGAGGGCCAAAATTCGGCACGAGGCTTATGTGGTATGGGGTTATCCTTCTCTGCAAGT 60 consensus_8798#1 -------------------------------------------------AATTCAGGCA- 10 consensus_8798#2 -----------------------GCGGGTGTTCTGGATCTATTCGGTACAAGTCATGGA- 36 consensus_8798#0 GGTGCGCGATATGGTTATGAAGCGTGGGCGTACTATGCTTGGTAGACACAAACATTCAAT 120 ** * consensus_8798#1 CCGAGN--NGCCTATCGAACTCAATACAGTTC-CTGTTACACTTCTTAAA-AGGAGAAA- 65 consensus_8798#2 CGAAGACAAGCCTATCGAACTCAATACAGTTC-CTGTTACACTTCTTAAA-AGGAGAAA- 93 consensus_8798#0 CGATAACAAAATCATTGAAGAGAAATTAGGTCACTGTGGGATTTTGTGTATAGAAGACAT 180 * ** *** ** ** ** **** * ** * * ** *** * consensus_8798#1 -----AAGGGTTAGCCGGGATATAATCAAACAACAGCG----TCTGCGTTCTGAGGAGTT 116 consensus_8798#2 -----AAGGGTTAGCCGGGATATAATCAAACAACAGCG----TCTGCGTTCTGAGGAGTT 144 consensus_8798#0 TATCCACGAACTTGTAACTATTGGTCCAAACTTTATCGCCGTTCAGCGCTTTTTATGTCC 240 * * * * ** ***** * ** ** *** * * consensus_8798#1 ACGTAAACGTGCCCGGAAACGCAGAAGTCT--TATCAAACCTCCGAT-CCGTTTTA-TAA 172 consensus_8798#2 ACGTAAACGTGCCCGGAAACGCAGAAGTCT--TATCAAACCTCCGAT-CCGTTTTA-TAA 200 consensus_8798#0 ATTCAAACTTATGTCATCCAGTCGTGATTGGATGTCAGGCTCACGGCGCTGTCACGCTCG 300 * **** * * * * * *** * ** * ** * consensus_8798#1 AGACGGGCCTCAGGCGGTCGTACGATGAGTTACGTT---TGCAGCGGATCACTAAACG-C 228 consensus_8798#2 AGACGGGCCTCAGGCGGTCGTACGATGAGTTACGTT---TGCAGCGGATCACTAAACG-C 256 consensus_8798#0 TGTTGATTCTCTAACGGGGTTTCGAGAAGAACAATTAAATGAAATGATTCGTAGAATGAT 360 * * *** *** * *** ** ** ** * * ** ** * consensus_8798#1 AAATCTCCGTTTTTAACATCTGATCAACCAAGACTGGGTATTGTAATTCGGTTAAAGGAC 288 consensus_8798#2 AAATCTCCGTTTTTAACATCTGATCAACCAAGACTGGGTATTGTAATTCGGTTAAAGGAC 316 consensus_8798#0 ATGATTGTGTAGATAATGCATGTATAGATACTATCCTCGGTTATTACTTTTTTTGCATAT 420 * * ** *** ** * * * ** * * * ** * consensus_8798#1 GATGAAGAACAACTTGCAGATGT-TTGTAAAGATGTATTC-CGATTACTTCGTCTTGATA 346 consensus_8798#2 GATGAAGAACAACTTGCAGATGT-TTGTAAAGATGTATTC-CGATTACCTCGTCTTGATA 374 consensus_8798#0 ATTACATGAGTATACAAATGTGTCTTGTTTGGAAATTTCTGCAACTGTGCTACTCTTTTG 480 * * * * * *** **** ** * * * * * * * consensus_8798#1 CCCTCAATCAAGCGGTTTTCA--TTAAAATTACAAAGGCTACTCTTA-GTCTGTTGAAT- 402 consensus_8798#2 CCCTCAATCAAGCGGTTTTCA--TTAAAATTACAAACGCTACTCTTA-GTCTGTTGAAT- 430 consensus_8798#0 TTTACTAACAAAGTTTTTGCACATTGAAGAATTATTATCCATTGTCATGTCAATCGATTC 540 * * *** *** ** ** ** * * * * * * *** * ** * consensus_8798#1 ATTGTTTCACCTTATGTGGTATGGGGTTATCCTTCTCTGCAAGTGGTGCGCGATATGGTT 462 consensus_8798#2 ATTGTTTCACCTTATGTGGTATGGGGTTATCCTTCTCTGCAAGTG--------------- 475 consensus_8798#0 GCAGTATTACCTT-TGTATTTATTGGTTTTCCAACTATTTACATCTTAAATGAACTTAGT 599 ** * ***** *** * **** *** ** * * * consensus_8798#1 ATGAAGCGTGGGCGTACTATGCTTGGTAGACACAAACATTCAATCGATAACAAAATCATT 522 consensus_8798#2 ------------------------------------------------------------ consensus_8798#0 GGACCATTGAAAAGTCCTTTATATATTTATTAACATCGGCAGCGAGCATTAACTTTGTCT 659 consensus_8798#1 GAAGAGAAATTAGGTCACTGTGGGATTTTGTGTATAGAAGACATTATCCACGAACTTGTA 582 consensus_8798#2 ------------------------------------------------------------ consensus_8798#0 ACAGAAATAAGTATGTGCTAGCTGAAGCTACATAACAATGTCTNTTTCANAACACTACAT 719 consensus_8798#1 ACTATTGGTCCAAACTTTATCGCCGTTCAGCGCTTTTTATGTCCATTCAAACTTATGTCA 642 consensus_8798#2 ------------------------------------------------------------ consensus_8798#0 NATTTGCCATAACGAGTACTCAATATTATTTAATTTGCAGTCACAAAAAAAAAAGATTTT 779 consensus_8798#1 TCCAGTCGTGATTGGATGTCAGGCTCACGGCGCTGTCACGCTCGTGTTG----------- 691 consensus_8798#2 ------------------------------------------------------------ consensus_8798#0 CATGTATTCGGNAAACTAGCCTATACTTTCAGTATAATTGATCATGAATGTCAAACTCAT 839 consensus_8798#1 ------------------------------------------------------------ consensus_8798#2 ------------------------------------------------------------ consensus_8798#0 TGCATCATTCTTTCAATAATCGCGNTATTGTACATAATTGCAAAACTGGACTTTTTGCGA 899 consensus_8798#1 ----------------------------- consensus_8798#2 ----------------------------- consensus_8798#0 ATTTGGGTTTTAATAAGTTTGGGAAATGA 928 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||