cluster # 8799

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Schistosoma mansoni
cluster # 8799 cluster # 8799 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8799#0 length = 1061 sequences # 4

consensus_8799#1 length = 670 sequences # 3

consensusID : consensus_8799#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1061
fasta sequence

                              [TCGATACTGTACTTGAAGAGCAGGCTGTTCAACATCGTGAAGTTGAACGATATGAATCAAACTTATTTAAATCCTACTTTTCATGTTTCCGCATACTGAACGGTGGAATTGAATCTGGTTTCCGACGAACAACTCCAAATGAATATCAGCCAAGATTGTTGCATTTCCTTCAAGAAGGTGGAAGAAGATTTCAAGTACAAGAGGTGGATCTTTCGATTAATTCATTAGATTCTACTGACGTTTTTATTCTTGATCTTGGTTCAAAACTATATCAATGGAACGGATCGAAAAGTAATAAGGAGAAGCGTTATAATGCTGTTCAATTCTTACTACAAGTCAGTAGCGAACGTAATGGACGTTGTAAAACTGCTGTATTGGACGAATTGTTTACAAATAGTAGCGATGAATTCTTGCAATATTTGCCAGATAAACCAGTTTATAGATCCAAAAAGTATTGTGAATCAACAAAATGTATTTACAAGCTATCTGATGAAGACGGTAATCTATCATTTGATTTAGTTGTG-AAAATCATCTCCCT-AAAGATCAGTTAACGAAGATGATGTCTTTCTCATCGATGCAGGATATCATTTATTTGTTTACATTGGAAGTAGATGTTTACCGTGTGAAAAGCAAAACGCTTTATCATATGCACATCATTACTTAAAAAACACAAGACATCCATTCATTCCAGTCACTGTTATTGGCTCTAATCAAAGTTCAGAAGAACTCGAACGAGCATGGGACAGAGATAGAAGTACAAGTTATCTACAGTAAAATACAAACAAAAATAACAAACAAATAAATAGACTTTTATATCACTGGATTTGTATGAAATTATTTCTTAATATTAATAAACACACATAGCAACCAATCACTGTATTATTGTTTTTTTAATTTTTTGTAGTTAACTGAAGTGATTACAATGATATTAGCTGATATTAGCTTAACTTAAATTTTATATTTAATATCAAAATATATCTTTTTTTCATAAATAGTTTATATACTAGAGTATAGTTTCTTTTACAAGTTCACAATGATTGTTCTCTTTTCAATTCTTTTTC]

[+] EMBL CD129949             [TCGATACTGTACTTGAAGAGCAGGCTGTTCAACATCGTGAAGTTGAACGATATGAATCAAACTTATTTAAATCCTACTTTTCATGTTTCCGCATACTGAACGGTGGAATTGAATCTGGTTTCCGACGAACAACTCCAAATGAATATCAGCCAAGATTGTTGCATTTCCTTCAAGAAGGTGGAAGAAGATTTCAAGTACAAGAGGTGGATCTTTCGATTAATTCATTAGATTCTACTGACGTTTTTATTCTTGATCTTGGTTCAAAACTATATCAATGGAACGGATCGAAAAGTAATAAGGAGAAGCGTTACAATGCTGTTCAATTCTTACTACAAGTCAGTAGCGAACGTAATGGACGTTATAAAACTGCTGTATTGGACGAATTGTTTACAAATAGTAGCGATGAATTCTTGCAATATTTGCCAGATAAACCAGTTTATAGATCCAAAAAGTATTGTGAATCAACAAAATGTATTTACAAGCTATCTGATGAAGACGGTAATCTATCATTTGATTTAGTTGTG AAAATCATCTCCCT AAAGATCAGTTAACGAAGATGATGTCTTTCTCATCGATGCANGATATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD063146             [                                                                                                                                                        AGATTGTTGCATTTCCTTCAAGAAGGTGGAAGAAGATTTCAAGTACAAGAGGTGGATCTTTCGATTAATTCATTAGATTCTACTGACGTTTTTATTCTTGATCTTGGTTCAAAACTATATCAATGGAACGGATCGAAAGGTAATAAGGAGAAGCGTTATAATGCTGTTCAATTCTTACTACAAGTCAGTAGCGAACGTAACGGACGTTGTAAAACTGCTGTATTGGACGAATTGTTTACAAATAGTAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD169563             [                                                                                                                                                                                                     CAAGAGGTGGATCTTTCGATTAATTCATTAGATTCTACTGACGTTTTTATTCTTGATCTTGGTTCAAAACTATATCAATGGAACGGATCGAAAAGTAATAAGGAGAAGCGTTATAATGCTGCTCAATTCTTACTACAAGTCAGTAGCGAACGTAATGGACGTTGTAAAACTGCTGTATCGGACGAATTGTTTACAAATAGTAGCGATGAATTCTTGCAATATTTGCCAGATAAACCAGTTTATAGATCCAAAAAGTATTGTGAATCAACAAAATGTATTTACAAGCTATCTGATGAAGACGGTAATCTATCATTTGATTTAGTTGTGAAAAATCATCTCCCTAAAAGATCAGTTAACGAAGATGATGTCTTTCTCATCGATGCAGGATATCATTTATTTGTTTACATTGGAAGTAGATGTTTACCGTGTGAAAAGCAAAACGCTTTATCATATGCACATCATTACTTAAAAAACACAAGACATCCATTCATTCCAGTCACTGTTATTGGCTCTAATCAAAGTTCAGAAGAACTCGAACGAGCATGGGACAGAGATAGAAGTACAAGTTATCTACAGTAAAATACAAACAAAAATAACAAACAAATAAATAGACTTTTATATCACTGGATTTGTATGAAATTATTTCTTAA                                                                                                                                                                                                                        ]
[-] EMBL CD129883             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATGATGTCTTTCTCATCGATGCAGGATATCATTTATTTGTNTACATTGGAAGTAGATGTTTACCGTGTGAAAAGCAAAACGCTTTATCATATGCACATCATTACTTAAAAAACACAAGACATCCATTCATTCCAGTCACTGTTATTGGCTCTAATCAAAGTTCAGAAGAACTCGAACGAGCATGGGACAGAGATAGAAGTACAAGTTATCTACAGTAAAATACAAACAAAAATAACAAACAAATAAATAGACTTTTATATCACTGGATTTGTATGAAATTATTTCTTAATATTAATAAACACACATAGCAACCAATCACTGTATTATTGTTTTTTTAATTTTTTGTAGTTAACTGAAGTGATTACAATGATATTAGCTGATATTAGCTTAACTTAAATTTTATATTTAATATCAAAATATATCTTTTTTTCATAAATAGTTTATATACTAGAGTATAGTTTCTTTTACAAGTTCACAATGATTGTTCTCTTTTCAATTCTTTTTC]




>consensus_8799#0
TCGATACTGTACTTGAAGAGCAGGCTGTTCAACATCGTGAAGTTGAACGATATGAATCAA
ACTTATTTAAATCCTACTTTTCATGTTTCCGCATACTGAACGGTGGAATTGAATCTGGTT
TCCGACGAACAACTCCAAATGAATATCAGCCAAGATTGTTGCATTTCCTTCAAGAAGGTG
GAAGAAGATTTCAAGTACAAGAGGTGGATCTTTCGATTAATTCATTAGATTCTACTGACG
TTTTTATTCTTGATCTTGGTTCAAAACTATATCAATGGAACGGATCGAAAAGTAATAAGG
AGAAGCGTTATAATGCTGTTCAATTCTTACTACAAGTCAGTAGCGAACGTAATGGACGTT
GTAAAACTGCTGTATTGGACGAATTGTTTACAAATAGTAGCGATGAATTCTTGCAATATT
TGCCAGATAAACCAGTTTATAGATCCAAAAAGTATTGTGAATCAACAAAATGTATTTACA
AGCTATCTGATGAAGACGGTAATCTATCATTTGATTTAGTTGTGAAAATCATCTCCCTAA
AGATCAGTTAACGAAGATGATGTCTTTCTCATCGATGCAGGATATCATTTATTTGTTTAC
ATTGGAAGTAGATGTTTACCGTGTGAAAAGCAAAACGCTTTATCATATGCACATCATTAC
TTAAAAAACACAAGACATCCATTCATTCCAGTCACTGTTATTGGCTCTAATCAAAGTTCA
GAAGAACTCGAACGAGCATGGGACAGAGATAGAAGTACAAGTTATCTACAGTAAAATACA
AACAAAAATAACAAACAAATAAATAGACTTTTATATCACTGGATTTGTATGAAATTATTT
CTTAATATTAATAAACACACATAGCAACCAATCACTGTATTATTGTTTTTTTAATTTTTT
GTAGTTAACTGAAGTGATTACAATGATATTAGCTGATATTAGCTTAACTTAAATTTTATA
TTTAATATCAAAATATATCTTTTTTTCATAAATAGTTTATATACTAGAGTATAGTTTCTT
TTACAAGTTCACAATGATTGTTCTCTTTTCAATTCTTTTTC

consensusID : consensus_8799#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 670
fasta sequence

                              [CCCTCCGAGCCAANAATTCGGCACGAGGCATATGCACATCATTACTTAAAAAACACAAGACATCCATTCATTCCAGTCACTGTTATTGGCTCTAATCAAAGTTCAGAAGAACTCGAACGAGCATGGGACAGAGATAGAAGTACAAGTTATCTACAGTAAAATACAAACAAAAATAACAAACAAATAAATAGACTTTTATATCACTGGATTTGTATGAAATTATTTCTTAATATTAATAAACACACATAGCAACCAATCACTGTATTATTGTTTTTTTAATTTTTTGTAGTTAACTGAAGTGATTACAATGATATTAGCTGATATTAGCTTAACTTAAATTTTATATTTAATATCAAAATATATCTTTTTTTCATAAATAGTTTATATACTAGAGTATAGTTTCTTTTACAAGTTCACAATGATTGTTCTCTTTTCATTTTTTTTTCCAGTAATATCTTATACCTTTTGTTTTTTACCTATATGGTTACTAAAAAGAAAAGACCAACTAATTTAGAAACTATTTTATCCTTTTCAAAAGTATTTTTTATTACAAAGATAGTTTTCTTTAATATTAGTATAATACAATTCTTTGACTAAATGTAAATGAACCTGTTTTAATTGGGTTTTAATTGATATCGGAAAGATATTTAACATTGATT-AATAC-ATTATA]

[+] EMBL CD082018             [CCCTCCGAGCCAANAATTCGGCACGAGGCATATGCACATCATTACTTAAAAAACACAAGACATCCATTCATTCCAGTCACTGTTATTGGCTCTAATCAAAGTTCAGAAGAACTCGAACGAGCATGGGACAGAGATAGAAGTACAAGTTATCTACAGTAAAATACAAACAAAAATAACAAACAAATAAATAGACTTTTATATCACTGGATTTGTATGAAATTATTTCTTAATATTAATAAACACACATAGCAACCAATCACTGTATTATTGTTTTTTTAATTTTTTGTAGTTAACTGAAGTGATTACAATGATATTAGCTGATATTAGCTTAACTTAAATTTTATATTTAATATCAAAATATATCTTTTTTTCATAAATAGTTTATATACTAGAGTATAGTTTCTTTTACAAGTTCACAATGATTGTTCTCTTTTCATTTTTTTTTCCAGTAATATCTTATACCTTTTGTTTTTTACCTATATGGTTACTAAAAAGAAAAGACCAACTAATTTAGAAACTATTTTATCCTTTTCAAAAGTATTTTTTATTACAAAGATAGTTTTCTTTAATATTAGTATAATACAATTCTTTGACTAAATGTAAATGAACCTGTTTTAATTGGGTTNTAATTGATATCGGAAAGATATTTAACATTGATTAAATAC ATTAT ]
[-] EMBL CD075633             [                             ATATGCACATCATTAC TAAAAAACACAAGACATCCATTCATTCCAGTCACTGTTATTGGCTCTAATCAAAGTTCAGAAGAACTCGAACGAGCATGGGACAGAGATAGAAGTACAAGTTATCTACAGTAAAATACAAACAAAAATAACAAACAAATAAATAGACTTTTATATCACTGGATTTGTATGAAATTATTTCTTAATATTAATAAACACACATAGCAACCAATCACTGTATTATTGTTTTTTTAATTTTTTGTAGTTAACTGAAGTGATTACAATGATATTAGCTGATATTAGCTTAACTTAAATTTTATATTTAATATCAAAATATATCTTTTTTTCATAAATAGTTTATATACTAGAGTATAGTTTCTTTTACAAGTTCACAATGATTGTTCTCTTTTCATTTTTTTTTCCAGTAATATCTTATACCTTTTGTTTTTTACCTATATGGTTACTAAAAAGAAAAGACCAACTAATTTAGAAACTATTTTATCCTTTTCAAAAGTATTTTTTATTACAAAGATAGTTTTCTTTAATATTAGTATAATACAATTCTTTGACTAAATGTAAATGAACCTGTTTTAATTGGGTTTTAATTGATATCGGAAAGATATTTAACATTGATT AATACAATTATA]
[+] EMBL CD137123             [                                                                                                                                                                                                                                                                                                             ATTACAATGATATTAGCTGATATTAGCTTAACTTAAATTTTATATTTAATATCAAAATATATCTTTTTTTCATAAATAGTTTATATACTAGAGTATAGTTTCCTTTACAAGTTCACAATGATTGTTCTCTTTTCATTTTTTTTTCCAGTAATATCTTATACCTTTGGTTTTTTACCTATATGGTTACTAAAAAGAAAAGACCAACTAATTTAGAAACTATTTTATCCTTTTCAAAAGTATTTTTTATTACAAAGATAGTTTTCTTTAATATTAGTATAATACAATTCTTTGACTAAATGTAAATGAACCTGTTTTAATTGGGTTTTAATTGATATCGGAAAGATATTTAACATTGATT AGTAC Aa    ]




>consensus_8799#1
CCCTCCGAGCCAANAATTCGGCACGAGGCATATGCACATCATTACTTAAAAAACACAAGA
CATCCATTCATTCCAGTCACTGTTATTGGCTCTAATCAAAGTTCAGAAGAACTCGAACGA
GCATGGGACAGAGATAGAAGTACAAGTTATCTACAGTAAAATACAAACAAAAATAACAAA
CAAATAAATAGACTTTTATATCACTGGATTTGTATGAAATTATTTCTTAATATTAATAAA
CACACATAGCAACCAATCACTGTATTATTGTTTTTTTAATTTTTTGTAGTTAACTGAAGT
GATTACAATGATATTAGCTGATATTAGCTTAACTTAAATTTTATATTTAATATCAAAATA
TATCTTTTTTTCATAAATAGTTTATATACTAGAGTATAGTTTCTTTTACAAGTTCACAAT
GATTGTTCTCTTTTCATTTTTTTTTCCAGTAATATCTTATACCTTTTGTTTTTTACCTAT
ATGGTTACTAAAAAGAAAAGACCAACTAATTTAGAAACTATTTTATCCTTTTCAAAAGTA
TTTTTTATTACAAAGATAGTTTTCTTTAATATTAGTATAATACAATTCTTTGACTAAATG
TAAATGAACCTGTTTTAATTGGGTTTTAATTGATATCGGAAAGATATTTAACATTGATTA
ATACATTATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8799#0      TCGATACTGTACTTGAAGAGCAGGCTGTTCAACATCGTGAAGTTGAACGATATGAATCAA 60
consensus_8799#1      ------------------------------------------------------------
                                                                                  

consensus_8799#0      ACTTATTTAAATCCTACTTTTCATGTTTCCGCATACTGAACGGTGGAATTGAATCTGGTT 120
consensus_8799#1      ------------------------------------------------------------
                                                                                  

consensus_8799#0      TCCGACGAACAACTCCAAATGAATATCAGCCAAGATTGTTGCATTTCCTTCAAGAAGGTG 180
consensus_8799#1      ------------------------------------------------------------
                                                                                  

consensus_8799#0      GAAGAAGATTTCAAGTACAAGAGGTGGATCTTTCGATTAATTCATTAGATTCTACTGACG 240
consensus_8799#1      ------------------------------------------------------------
                                                                                  

consensus_8799#0      TTTTTATTCTTGATCTTGGTTCAAAACTATATCAATGGAACGGATCGAAAAGTAATAAGG 300
consensus_8799#1      ------------------------------------------------------------
                                                                                  

consensus_8799#0      AGAAGCGTTATAATGCTGTTCAATTCTTACTACAAGTCAGTAGCGAACGTAATGGACGTT 360
consensus_8799#1      ------------------------------------------------------------
                                                                                  

consensus_8799#0      GTAAAACTGCTGTATTGGACGAATTGTTTACAAATAGTAGCGATGAATTCTTGCAATATT 420
consensus_8799#1      ------------------------------------------------------------
                                                                                  

consensus_8799#0      TGCCAGATAAACCAGTTTATAGATCCAAAAAGTATTGTGAATCAACAAAATGTATTTACA 480
consensus_8799#1      ------------------------------------------------------------
                                                                                  

consensus_8799#0      AGCTATCTGATGAAGACGGTAATCTATCATTTGATTTAGTTGTGAAAATCATCTCCCTAA 540
consensus_8799#1      ------------------------------------------------------------
                                                                                  

consensus_8799#0      AGATCAGTTAACGAAGATGATGTCTTTCTCATCGATGCAGGATATCATTTATTTGTTTAC 600
consensus_8799#1      ------------------------------------------------------------
                                                                                  

consensus_8799#0      ATTGGAAGTAGATGTTTACCGTGTGAAAAGCAAAACGCTTTATCATATGCACATCATTAC 660
consensus_8799#1      --------------CCCTCCGAGCCAANAATTCGGCACGA-GGCATATGCACATCATTAC 45
                                        *** *  ** *      * *     *****************

consensus_8799#0      TTAAAAAACACAAGACATCCATTCATTCCAGTCACTGTTATTGGCTCTAATCAAAGTTCA 720
consensus_8799#1      TTAAAAAACACAAGACATCCATTCATTCCAGTCACTGTTATTGGCTCTAATCAAAGTTCA 105
                      ************************************************************

consensus_8799#0      GAAGAACTCGAACGAGCATGGGACAGAGATAGAAGTACAAGTTATCTACAGTAAAATACA 780
consensus_8799#1      GAAGAACTCGAACGAGCATGGGACAGAGATAGAAGTACAAGTTATCTACAGTAAAATACA 165
                      ************************************************************

consensus_8799#0      AACAAAAATAACAAACAAATAAATAGACTTTTATATCACTGGATTTGTATGAAATTATTT 840
consensus_8799#1      AACAAAAATAACAAACAAATAAATAGACTTTTATATCACTGGATTTGTATGAAATTATTT 225
                      ************************************************************

consensus_8799#0      CTTAATATTAATAAACACACATAGCAACCAATCACTGTATTATTGTTTTTTTAATTTTTT 900
consensus_8799#1      CTTAATATTAATAAACACACATAGCAACCAATCACTGTATTATTGTTTTTTTAATTTTTT 285
                      ************************************************************

consensus_8799#0      GTAGTTAACTGAAGTGATTACAATGATATTAGCTGATATTAGCTTAACTTAAATTTTATA 960
consensus_8799#1      GTAGTTAACTGAAGTGATTACAATGATATTAGCTGATATTAGCTTAACTTAAATTTTATA 345
                      ************************************************************

consensus_8799#0      TTTAATATCAAAATATATCTTTTTTTCATAAATAGTTTATATACTAGAGTATAGTTTCTT 1020
consensus_8799#1      TTTAATATCAAAATATATCTTTTTTTCATAAATAGTTTATATACTAGAGTATAGTTTCTT 405
                      ************************************************************

consensus_8799#0      TTACAAGTTCACAATGATTGTTCTCTTTTCAATTCTTTTTC------------------- 1061
consensus_8799#1      TTACAAGTTCACAATGATTGTTCTCTTTTCATTTTTTTTTCCAGTAATATCTTATACCTT 465
                      ******************************* ** ******                   

consensus_8799#0      ------------------------------------------------------------
consensus_8799#1      TTGTTTTTTACCTATATGGTTACTAAAAAGAAAAGACCAACTAATTTAGAAACTATTTTA 525
                                                                                  

consensus_8799#0      ------------------------------------------------------------
consensus_8799#1      TCCTTTTCAAAAGTATTTTTTATTACAAAGATAGTTTTCTTTAATATTAGTATAATACAA 585
                                                                                  

consensus_8799#0      ------------------------------------------------------------
consensus_8799#1      TTCTTTGACTAAATGTAAATGAACCTGTTTTAATTGGGTTTTAATTGATATCGGAAAGAT 645
                                                                                  

consensus_8799#0      -------------------------
consensus_8799#1      ATTTAACATTGATTAATACATTATA 670