Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8802 cluster # 8802       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8802#0 length = 491 sequences # 5  
consensus_8802#1 length = 348 sequences # 2  

consensusID : consensus_8802#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 491
fasta sequence
                              [CTTGGCATTTGTTTCTTAGAAGCCGTCTTCGGGATGACCGCAGAGGAAGCGCAACTCATACTGCAAGTACATAATGAGCATCGAGCATACCGAAACCTGTGTGGCGAAAAGGGCATAGTGCCAGCGGAGGAAATACTACAGCCTCTTGAGTGGGACGATGAACTGGCTGCCGCTGCTCAAAGTTGGTCT-AAAAAATGCAATCCATATGAAGAAGAACCGATTGGAAATGTTGGTAAATGGAATTCAGTTGGTCGGAATTCCGTTATTCAATCCGAGTTGGCAGGAGCTGTTGCATATTGGATGGAAGAATCGAACATTTATAAACACAATACAGACTCCTGTAGTTCAACGTTTGAGTGCAATAGTTACAAGCAGATAGTTCAAGCAGAAACGGCGTACGTGGGATGCGGTTTTACTAGATGCAGACAATATGAATATCCATCAAACATGTTGATCGCCTGTTACTATTCACCCAAAGTGAAGAGTGGTCC]

[+] EMBL CD163177             [CTTGGCATTTGTTTCTTAGAAGCCGTCTTCGGGATGACCGCAGAGGAAGCGCAACTCATACTGCAAGTACATAATGAGCATCGAGCATACCGAAACCTGTGTGGCGAAAAGGGCATAGTGCCAGCGGAGGAAATACTACAGCCTCTTGAGTGGGACGATGAACTGGCTGCCGCTGCTCAAAGTTGGTCT AAAAAATGCAATCCATATGAAGAAGAACCGATTGGAAATGTTGGTAAATGGAATTCAGTTGGTCGGAATTCCGTTATTCAATCCGAGTTGGCAGGAGCTGTTGCATATTGGATGGAAGAATCGAACATTTATAAACACAATACAGACTCCTGTAGTTCAACGTTGGAGTGCAATAGTTACAAGCAGATAGTTCAAGCAGAAACGGCGTACGTGGGATGCGGTTTTACTAGATGCAGACAATATGAATATCCATCAAACA                                           ]
[+] EMBL CD112827             [CTTGGCATTTGTTTCTTAGAAGCCGTCTTCGGGATGACCGCAGAGGAAGCGCAACTCATACTGCAAGTACATAATGAGCATCGAGCATACCGAAACCTGTGTGGCGAAAAGGGCATAGTGCCAGCGGAGGAAATACTACAGCCTCTTGAGTGGGACGATGAACTGGCTGCCGCTGCTCAAAGTTGGTCT AAAAAATGCAATCCATATGAAGAAGAACCGATTGGAAATGTTGGTAAATGGAATTCAGTTGGTCGGAATTCCGTTATTCAATCCGAGTTGGCAGGAGCTGTTGCATATTGGATGGAAGAATCGAACATTTATAAACACAATACAGACTCCTGTAG                                                                                                                                                   ]
[-] EMBL CD095352             [                          CTTCGGGATGACCGCAGAGGAAGCGCAACTCATACTGCAAGTACATAATGAGCATCGAGCATACCGAAACCTGTGTGGCGAAAAGGGCA                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD097757             [                                                                        AATGAGTATCGAGCATACCGAAACCTGTGTGGCGAAAAGGGCATAGTGCCAGCGGAGGAAACACTACAGCCTCTTGAGTGGGACGATGAACTGGCTGCCGCTGCTCAAAGTTGGTCTAAAAAAATGCAATCCATATGAAGAAGAACCGATTGGAAATGTTGGTAAATGGAATTCAGTTGGTCGGAATTCCGTTATTCAATCCGAGTTGGCAGGAGCTGTTGCATATTGGATGGAAGAATCGAACATTTATAAACACAATACAGACTCCTGTAGTTCAACGTTTGAGTGCAATAGTTACAAGCAGATAGTTCAAGCAGAAACGGCGTACGTGGGATGCGGTTTTACTAGATGCAGACAATATGAATATCCATCAAACATGTTGATCGCCTGTTACTATTCACCCAAAGTGAAGAGTGGTCC]
[-] EMBL CD114811             [                                                                                  GAGCATACCGAAACCTGTGTGGCGAAAAGGGCATAGTGCCAGCGGAGGAAATACTACAGCCTCTTGAGTGGGACGATGAACTGGTTGCCGCTGCTCAAAGTTGGTCT AAAAAATGCAATCCATATGAAGAAGAACCGATTGGAAATGTTGGTAAATGGAATTCAGTTGGTCGGAATTCCGTTATTCAATCCGAGTTGGCAGGAGCTGTTGCATATTGGATGGAAGAATCGAACATTTATAAACACAATACAGACTCCTGTAGTTCAACGTTTGAGTGCAATAGTTACAAGCAGATAGTTCAAGCAGAAACGGCGTACGTGGGATGCGG                                                                                 ]


>consensus_8802#0 CTTGGCATTTGTTTCTTAGAAGCCGTCTTCGGGATGACCGCAGAGGAAGCGCAACTCATA CTGCAAGTACATAATGAGCATCGAGCATACCGAAACCTGTGTGGCGAAAAGGGCATAGTG CCAGCGGAGGAAATACTACAGCCTCTTGAGTGGGACGATGAACTGGCTGCCGCTGCTCAA AGTTGGTCTAAAAAATGCAATCCATATGAAGAAGAACCGATTGGAAATGTTGGTAAATGG AATTCAGTTGGTCGGAATTCCGTTATTCAATCCGAGTTGGCAGGAGCTGTTGCATATTGG ATGGAAGAATCGAACATTTATAAACACAATACAGACTCCTGTAGTTCAACGTTTGAGTGC AATAGTTACAAGCAGATAGTTCAAGCAGAAACGGCGTACGTGGGATGCGGTTTTACTAGA TGCAGACAATATGAATATCCATCAAACATGTTGATCGCCTGTTACTATTCACCCAAAGTG AAGAGTGGTCC



consensusID : consensus_8802#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 348
fasta sequence
                              [TAGTTTACAAGGCGGATAGTTTCAATGCAGAAAACGGCCTATCGTGGGATGCGGTTTTACTAGATGCAGAACATTATGAATATTCCAT-CAAACATGTTGATCGCCCTGTTACTATTCACCCAAAATGAAGATGTGGTCCACCCATACATTGACG-CAACGAACAGATAGATGCAAGTATTCTGAATGCGAATCTGAATAAAATAAAAGGCAAAGGGAAGTAGGAGTTAAAGGAAGAGAGGTGAAAAATTAAAT-CAGTTGTTTCGTTATATTTAATCGACAATTTAATCAGTACTAATAATTTTAAATAAATAATGATGCTGCATAAAAAAAAAAGTCGGAAACTCGAGA]

[-] EMBL AI882670             [TAGTTTACAAGGCGGATAGTTTCAATGCAGAAAACGGCCTATCGTGGGATGCGGTTTTACTAGATGCAGAACATTATGAATATTCCAT CAAACATGTTGATCGCCCTGTTACTATTCACCCAAAATGAAGATGTGGTCCACCCATACATTGACG CAACGAACAGATAGATGCAAGTATTCTGAATGCGAATCTGAATAAAATAAAAGGCAAAGGGAAGTAGGAGTTAAAGGAAGAGAGGTGAAAAATTAAAT CAGTTGTTTCGTTATATTTAATCGACAATTTAATCAGTACTAATAATTTTAAATAAATAATG                                  ]
[-] EMBL AI395850             [                                                                cbcgacACA TATGTATATACCCTCCAAACATGTTGATCG CCTGTTACTATTCACCCAAAGTGAAGA GT GTCCA CCATACACTGACGCCAACGAACAGGAAGATGCAAGTA TCTGAATGCGAATCTGAATAAAATAAAAGGCAAAGGGAAGTAGGAGTTAAAGGAAGAGAGGTGAAAAATTAAATCCAGTTGTTTCGTTATATTTAAT GACAATTTAATCAGTACTAATAATTTTAAATAAATAATGATGCTGCATAAAAAAAAAAGTCGGAAACTCGAGA]


>consensus_8802#1 TAGTTTACAAGGCGGATAGTTTCAATGCAGAAAACGGCCTATCGTGGGATGCGGTTTTAC TAGATGCAGAACATTATGAATATTCCATCAAACATGTTGATCGCCCTGTTACTATTCACC CAAAATGAAGATGTGGTCCACCCATACATTGACGCAACGAACAGATAGATGCAAGTATTC TGAATGCGAATCTGAATAAAATAAAAGGCAAAGGGAAGTAGGAGTTAAAGGAAGAGAGGT GAAAAATTAAATCAGTTGTTTCGTTATATTTAATCGACAATTTAATCAGTACTAATAATT TTAAATAAATAATGATGCTGCATAAAAAAAAAAGTCGGAAACTCGAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8802#0      CTTGGCATTTGTTTCTTAGAAGCCGTCTTCGGGATGACCGCAGAGGAAGCGCAACTCATA 60
consensus_8802#1      ---------------------------------------------------TAGTTTACA 9
                                                                          *  * * *

consensus_8802#0      CTGCAAGTACATAATGAGCATCGAGCATACCGAAACCTGTGTGGCGAAAAGGGCATAGTG 120
consensus_8802#1      ----AGGCGGATAGTTTCAATGCAGAAAACGG---CCTATCGTGGGATGCGGTTTTACTA 62
                          * *   *** *    **  ** * ** *   *** *   * **   **   ** * 

consensus_8802#0      CCAGCGGAGGAAATACTACAGCCTCTTGAGTGGGACGATGAACTGGCTGCCGCTGCTCAA 180
consensus_8802#1      GATGCAGAACATTATGAATATTCCATCAAACATGTTGATCGCCCTGTTACTATTCACCCA 122
                         ** **  *      * *  *  *  *    *  ***   *  * * *   *   * *

consensus_8802#0      AGTTGGTCTAAAAAATGCAATCCATATGAAGAAGAACCGATTGGAAATGTTGGTAAATGG 240
consensus_8802#1      AAATG------AAGATGTGGTCCACCCATACATTGACGCAACGAACA----GATAGATGC 172
                      *  **      ** ***   ****     * *   **  *  * * *    * ** *** 

consensus_8802#0      AATTCAGTTGGTCGGAATTCCGTTATTCAATCCGAGTTGGCAGGAGCTGTTGCATATTGG 300
consensus_8802#1      AAGTATTCTGAATGCGAATCTGA-ATAAAATAAAAGGCAAAGGGAA--GTAGGAGTTAAA 229
                      ** *    **   *  * ** *  **  ***   **      ***   ** * *  *   

consensus_8802#0      ATGGAAGAATCGAACATTTATAAACACAATACAGACTCCTGTAGTTCAACGTTTGAGTGC 360
consensus_8802#1      GGAAGAGAGGTGAAAAATTAAATCAGTTGTTTCGTTATATTTAAT-CGACAATTTAAT-C 287
                           ***   *** * *** *       *   *     * ** * * **  ** * * *

consensus_8802#0      AATAGTTACAAGCAGATAGTTCAAGCAGAAACGGCGTACGTGGGATGCGGTTTTACTAGA 420
consensus_8802#1      AGTACTAATAATTTTAAA---TAAATAATGATGCTGCATAAAAAAAAAAGTCGGA--AAC 342
                      * ** * * **    * *    **  *   * *  * *      *    **   *  *  

consensus_8802#0      TGCAGACAATATGAATATCCATCAAACATGTTGATCGCCTGTTACTATTCACCCAAAGTG 480
consensus_8802#1      TCGAGA------------------------------------------------------ 348
                      *  ***                                                      

consensus_8802#0      AAGAGTGGTCC 491
consensus_8802#1      -----------
                                 




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)