These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8802#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 491 fasta sequence [CTTGGCATTTGTTTCTTAGAAGCCGTCTTCGGGATGACCGCAGAGGAAGCGCAACTCATACTGCAAGTACATAATGAGCATCGAGCATACCGAAACCTGTGTGGCGAAAAGGGCATAGTGCCAGCGGAGGAAATACTACAGCCTCTTGAGTGGGACGATGAACTGGCTGCCGCTGCTCAAAGTTGGTCT-AAAAAATGCAATCCATATGAAGAAGAACCGATTGGAAATGTTGGTAAATGGAATTCAGTTGGTCGGAATTCCGTTATTCAATCCGAGTTGGCAGGAGCTGTTGCATATTGGATGGAAGAATCGAACATTTATAAACACAATACAGACTCCTGTAGTTCAACGTTTGAGTGCAATAGTTACAAGCAGATAGTTCAAGCAGAAACGGCGTACGTGGGATGCGGTTTTACTAGATGCAGACAATATGAATATCCATCAAACATGTTGATCGCCTGTTACTATTCACCCAAAGTGAAGAGTGGTCC] [+] EMBL CD163177 [CTTGGCATTTGTTTCTTAGAAGCCGTCTTCGGGATGACCGCAGAGGAAGCGCAACTCATACTGCAAGTACATAATGAGCATCGAGCATACCGAAACCTGTGTGGCGAAAAGGGCATAGTGCCAGCGGAGGAAATACTACAGCCTCTTGAGTGGGACGATGAACTGGCTGCCGCTGCTCAAAGTTGGTCT AAAAAATGCAATCCATATGAAGAAGAACCGATTGGAAATGTTGGTAAATGGAATTCAGTTGGTCGGAATTCCGTTATTCAATCCGAGTTGGCAGGAGCTGTTGCATATTGGATGGAAGAATCGAACATTTATAAACACAATACAGACTCCTGTAGTTCAACGTTGGAGTGCAATAGTTACAAGCAGATAGTTCAAGCAGAAACGGCGTACGTGGGATGCGGTTTTACTAGATGCAGACAATATGAATATCCATCAAACA ] [+] EMBL CD112827 [CTTGGCATTTGTTTCTTAGAAGCCGTCTTCGGGATGACCGCAGAGGAAGCGCAACTCATACTGCAAGTACATAATGAGCATCGAGCATACCGAAACCTGTGTGGCGAAAAGGGCATAGTGCCAGCGGAGGAAATACTACAGCCTCTTGAGTGGGACGATGAACTGGCTGCCGCTGCTCAAAGTTGGTCT AAAAAATGCAATCCATATGAAGAAGAACCGATTGGAAATGTTGGTAAATGGAATTCAGTTGGTCGGAATTCCGTTATTCAATCCGAGTTGGCAGGAGCTGTTGCATATTGGATGGAAGAATCGAACATTTATAAACACAATACAGACTCCTGTAG ] [-] EMBL CD095352 [ CTTCGGGATGACCGCAGAGGAAGCGCAACTCATACTGCAAGTACATAATGAGCATCGAGCATACCGAAACCTGTGTGGCGAAAAGGGCA ] [+] EMBL CD097757 [ AATGAGTATCGAGCATACCGAAACCTGTGTGGCGAAAAGGGCATAGTGCCAGCGGAGGAAACACTACAGCCTCTTGAGTGGGACGATGAACTGGCTGCCGCTGCTCAAAGTTGGTCTAAAAAAATGCAATCCATATGAAGAAGAACCGATTGGAAATGTTGGTAAATGGAATTCAGTTGGTCGGAATTCCGTTATTCAATCCGAGTTGGCAGGAGCTGTTGCATATTGGATGGAAGAATCGAACATTTATAAACACAATACAGACTCCTGTAGTTCAACGTTTGAGTGCAATAGTTACAAGCAGATAGTTCAAGCAGAAACGGCGTACGTGGGATGCGGTTTTACTAGATGCAGACAATATGAATATCCATCAAACATGTTGATCGCCTGTTACTATTCACCCAAAGTGAAGAGTGGTCC] [-] EMBL CD114811 [ GAGCATACCGAAACCTGTGTGGCGAAAAGGGCATAGTGCCAGCGGAGGAAATACTACAGCCTCTTGAGTGGGACGATGAACTGGTTGCCGCTGCTCAAAGTTGGTCT AAAAAATGCAATCCATATGAAGAAGAACCGATTGGAAATGTTGGTAAATGGAATTCAGTTGGTCGGAATTCCGTTATTCAATCCGAGTTGGCAGGAGCTGTTGCATATTGGATGGAAGAATCGAACATTTATAAACACAATACAGACTCCTGTAGTTCAACGTTTGAGTGCAATAGTTACAAGCAGATAGTTCAAGCAGAAACGGCGTACGTGGGATGCGG ] consensusID : consensus_8802#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 348 fasta sequence [TAGTTTACAAGGCGGATAGTTTCAATGCAGAAAACGGCCTATCGTGGGATGCGGTTTTACTAGATGCAGAACATTATGAATATTCCAT-CAAACATGTTGATCGCCCTGTTACTATTCACCCAAAATGAAGATGTGGTCCACCCATACATTGACG-CAACGAACAGATAGATGCAAGTATTCTGAATGCGAATCTGAATAAAATAAAAGGCAAAGGGAAGTAGGAGTTAAAGGAAGAGAGGTGAAAAATTAAAT-CAGTTGTTTCGTTATATTTAATCGACAATTTAATCAGTACTAATAATTTTAAATAAATAATGATGCTGCATAAAAAAAAAAGTCGGAAACTCGAGA] [-] EMBL AI882670 [TAGTTTACAAGGCGGATAGTTTCAATGCAGAAAACGGCCTATCGTGGGATGCGGTTTTACTAGATGCAGAACATTATGAATATTCCAT CAAACATGTTGATCGCCCTGTTACTATTCACCCAAAATGAAGATGTGGTCCACCCATACATTGACG CAACGAACAGATAGATGCAAGTATTCTGAATGCGAATCTGAATAAAATAAAAGGCAAAGGGAAGTAGGAGTTAAAGGAAGAGAGGTGAAAAATTAAAT CAGTTGTTTCGTTATATTTAATCGACAATTTAATCAGTACTAATAATTTTAAATAAATAATG ] [-] EMBL AI395850 [ cbcgacACA TATGTATATACCCTCCAAACATGTTGATCG CCTGTTACTATTCACCCAAAGTGAAGA GT GTCCA CCATACACTGACGCCAACGAACAGGAAGATGCAAGTA TCTGAATGCGAATCTGAATAAAATAAAAGGCAAAGGGAAGTAGGAGTTAAAGGAAGAGAGGTGAAAAATTAAATCCAGTTGTTTCGTTATATTTAAT GACAATTTAATCAGTACTAATAATTTTAAATAAATAATGATGCTGCATAAAAAAAAAAGTCGGAAACTCGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8802#0 CTTGGCATTTGTTTCTTAGAAGCCGTCTTCGGGATGACCGCAGAGGAAGCGCAACTCATA 60 consensus_8802#1 ---------------------------------------------------TAGTTTACA 9 * * * * consensus_8802#0 CTGCAAGTACATAATGAGCATCGAGCATACCGAAACCTGTGTGGCGAAAAGGGCATAGTG 120 consensus_8802#1 ----AGGCGGATAGTTTCAATGCAGAAAACGG---CCTATCGTGGGATGCGGTTTTACTA 62 * * *** * ** ** * ** * *** * * ** ** ** * consensus_8802#0 CCAGCGGAGGAAATACTACAGCCTCTTGAGTGGGACGATGAACTGGCTGCCGCTGCTCAA 180 consensus_8802#1 GATGCAGAACATTATGAATATTCCATCAAACATGTTGATCGCCCTGTTACTATTCACCCA 122 ** ** * * * * * * * *** * * * * * * * consensus_8802#0 AGTTGGTCTAAAAAATGCAATCCATATGAAGAAGAACCGATTGGAAATGTTGGTAAATGG 240 consensus_8802#1 AAATG------AAGATGTGGTCCACCCATACATTGACGCAACGAACA----GATAGATGC 172 * ** ** *** **** * * ** * * * * * ** *** consensus_8802#0 AATTCAGTTGGTCGGAATTCCGTTATTCAATCCGAGTTGGCAGGAGCTGTTGCATATTGG 300 consensus_8802#1 AAGTATTCTGAATGCGAATCTGA-ATAAAATAAAAGGCAAAGGGAA--GTAGGAGTTAAA 229 ** * ** * * ** * ** *** ** *** ** * * * consensus_8802#0 ATGGAAGAATCGAACATTTATAAACACAATACAGACTCCTGTAGTTCAACGTTTGAGTGC 360 consensus_8802#1 GGAAGAGAGGTGAAAAATTAAATCAGTTGTTTCGTTATATTTAAT-CGACAATTTAAT-C 287 *** *** * *** * * * * ** * * ** ** * * * consensus_8802#0 AATAGTTACAAGCAGATAGTTCAAGCAGAAACGGCGTACGTGGGATGCGGTTTTACTAGA 420 consensus_8802#1 AGTACTAATAATTTTAAA---TAAATAATGATGCTGCATAAAAAAAAAAGTCGGA--AAC 342 * ** * * ** * * ** * * * * * * ** * * consensus_8802#0 TGCAGACAATATGAATATCCATCAAACATGTTGATCGCCTGTTACTATTCACCCAAAGTG 480 consensus_8802#1 TCGAGA------------------------------------------------------ 348 * *** consensus_8802#0 AAGAGTGGTCC 491 consensus_8802#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||