These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8803#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 934 fasta sequence [CCTCGCGGCCAAAAATTCGGCACGAGGCTTGCATCGACACAAAAAGTTAGTAAAGCAGCTCGTCGTCGTGAAAAACGGGCTGCTCTTCAACATGCTCAACAGACAGCTGCCCTAAGGAATATACAAGCAGATAGATCTGATAGTCTTCGATCTGTTGAAATGAAAAGGTTAGAAAAGGAACTTTCAGCCCGTCACCTATGTTTATTTGAAGTTCCTTCAGATGGAGATTGCCTTTATCAGTCAATTGGGCATCAATTAAAAATTCGAAATTATCCATTACACGAATTACTAGGAAAGATTGAAATGTCTAATCCAGAAAATCTTAATGATATTAATACCGATCAGACAATGAAACAAGTGGTGAAAATTTTGCGTCATCTTGCATCGTATCACATTCGCAAGAATATGAATGATTTCCTACCATTTTTGTTCAACCCAGATTCTGGAGAACCAATGAGTATAGCTAATTTTGAACAATATTGTGACAATATAGAAAAAACATCAACGT-GG-GGTGGACAAATTGAAATCCGTGCCTTATCTACAATGCTTCAACTTCCTATTGAAATATTACAAGCTG-AAGGAGTCTCATTAATCAT-TGGGGAAGAGTTTTCTGAACAGCCACCAATCACTATTGTATACCACCGTTATGCGTTCGCACTCGGTGAACACTACAATTCCTGTCTAAAGAAACAAGGATTTCAA-TG-ATTCCTAAAAG-AAAAAGGAATTCCATGTAAATAGTAATCACTAAACCATTGTGTATATTATAACTGTGCTTATATTA-ATATTTGATCAATATTAGGACTCATTTTTTAAAGGTAAAGCGACTCTAAAATGTAATGTAGTTTCAATAGGCTTCAAAATCTGTTGTATTCAGTGATAACTATCTTTACTGGAATAAAATACAATACTGTGGATTTCACTATAAAAAATGCTA] [+] EMBL CD080192 [CCTCGCGGCCAAAAATTCGGCACGAGGCTTGCATCGACACAAAAAGTTAGTAAAGCAGCTCGTCGTCGTGAAAAACGGGCTGCTCTTCAACATGCTCAACAGACAGCTGCCCTAAGGAATATACAAGCAGATAGATCTGATAGTCTTCGATCTGTTGAAATGAAAAGGTTAGAAAAGGAACTTTCAGCCCGTCACCTATGTTTATTTGAAGTTCCTTCAGATGGAGATTGCCTTTATCAGTCAATTGGGCATCAATTAAAAATTCGAAATTATCCATTACACGAATTACTAGGAAAGATTGAAATGTCTAATCCAGAAAATCTTAATGATATTAATACCGATCAGACAATGAAACAAGTGGTGAAAATTTTGCGTCATCTTGCATCGTATCACATTCGCAAGAATATGAATGATTTCCTACCATTTTTGTTCAACCCAGATTCTGGAGAACCAATGAGTATAGCTAATTTTGAACAATATTGTGACAATATAGAAAAAACATCAACGTNGG GGTGGACAAATTGAAATCCGTGCCTTATCTACAATGCTTCAACTTCCTATTGAAATATTACAAGCTG AAGGAGTCTCATTAATCATNTGGGGAAGAGTTTTCTGAACAGCCACCAATCACTATTGTATACCACCGTTATGCGTTCGCACTCGGTGAACACTACAATTCCTGTCTAAAGAAACAAGGATTTCAA TG ATTCCTANAAG AAAAGGAATTCCATGTAAATAGTAATCACTANACCATTGTGTATATTATAACTGTGCTTATATTANATATTTGATC ATATTANGACTCATTTTTTAAGGGT AAGCGACTCT AAATGTTATGTAGTTTC ATAGGC TCCAAATCTGTTGGATTC NTGAT ACTATC TTACTGG AT AAAT C ATACTGT ] [-] EMBL CD073112 [ tAGACAATGAAACAAGTGGTGAAAATTNTGCGTCATCTTGCATCGTATCACATTCGCAAGAATATGAATGATTTCCTACCATTTTTGTTCAACCCAGATTCTGGAGAACCAATGAGTATAGCTAATTTTGAACAATATTGTGACAATATAGAAAAAACATCAACGT GG GGTGGACAAATTGAAATCCGTGCCTTATCTACAATGCTTCAACTTCCTATTGAAATATTACAAGCTG AAGGAGTCTCATTAATCAT TGGGGAAGAGTTTTTTGAACAGCCACCAATCACTATTGTATACCCCCGTTATGCGTTCGCACTCGGTGAACACTACAATTCCTGTCTAAAGAAACAAGGATTTCAA TG ATTCCTAAAAG AAAAAGGAATTCCATGTAAATAGTAATCACTAAACCATTGTGTATATTATAACTGTGCTTATATTA ATATTTGATCAATATTAGGACTCATTTTTTAAAGGTAAAGCGACTCTAAAATGTAATGTAGTTTCAATAGGCTTCAAAATCTGTTGTATTCAGTGATAACTATCTTTACTGGAATAAAATACAATACTGTGGA ] [+] EMBL CD083530 [ GCTAATTTTGAACTATATTGTCACAATATTGAAAAAACATCAACGT GG GGTGGACAAATTGAAATCCGTGCCTTATCTACAATGCTTCAACTTCCTATTGAAATATTACAAGCTG AAGGAGTCTCATTAATCAT TGGGGAAGAGCTTTCTGAACAGCCACCAATCACTATTGTATACCACCGTTATGCGTTCGCACTCGGTGAACACTACAATTCCTGTCTAAAGAAACAAGGATTTCAA TG ATTCCTAAAAG AAAAAGGAATTCCATGTAAATAGTAATCACTAAACCATTGTGTATATTATAACTGTGCTTATATTA ATATTTGATCAATATTAGGACTCATTTTTTAAAGGTAAAGCGACTCTNAAATGTAATGTAGTTTCAATAGGCTTCAAAATCTGTTGTATTCAGTGATAACTATCTTTACTGGAATAAAATACAATACTGTGG ] [+] EMBL CD083614 [ TCAACGT GGAGGTGGACAAATTGAAATCCGTGCCTTATCTACAATGCTTCAACTTCCTATTGAAATATTACAAGCTGTAAGGAGTCTCATTAATCAT TGGGGAAGAGCTTTCTGAACAGCCACCAATCACTATTGTATACCACCGTTATGCGTTCGCACTCGGTGAACACTACAATTCCTGTCTAAAGAAACAAGGATTGCAATTGTATTCCTAAAAGTAAAAAGGAATTCCATGTTAATAGTAATCACTAAACCATTGTGTATATTATAACTGTGCTTATATTA ATATTTGATCAATATTAGGACTCATTTTTTAAAGGTAAAGCGACTCTAAAATGTAATGTAGTTTCAATAGGCTTCAAAATCTGTTGTATTCAGTGATCACTATCTTTACTGGAATAAAATACAATACTGTGGATTTCACTATAAAAAATGCTA] consensusID : consensus_8803#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 692 fasta sequence [GGCACGAGGCAAATGGCTGCGTTACGTAGGC-TTTCTGTTAATTTCCCCCAAATTATCGAC-----TTATCATCTAGATTGATTTTCAAATGACAAAACGTGGAGCTATTCAAGTCTGTTTGTTAAGTTGAAGCTGTTTGCGAAGAATTCTGTCCCTTGTGTTCAGTGAGGAAAAAGATATCTTTGGAGAATATGGATAATACTTGCACTCAGGATAAACTTGCATCGACACAAAAAGTTAGTAAAGCAGCTCGTCGTCGTGAAAAACGGGCTGCTCTTCAACATGCTCAACAGACAGCTGCCCTAAGGAATATACAAGCAGATAGATCTGATAGTCTTCGATCTGTTGAAATGAAAAGGTTAGAAAAGGAACTTTCAGCCCGTCACCTATGTTTATTTGAAGTTCCTTCAGATGGAGATTGCCTTTATCAGTCAATTGGGCATCAATTAAAAATTCGAAATTATCCATTACACGAATTACTAGGAAAGATTGAAATGTCTAATCCAGAAAATCTTAATGATATTAATACCGATCAGACAATGAAACAAGTGGTGAAAATTTTGCGTCATCTTGCATCGTATCACATTCGCAAGAATATGAATGATTTCCTACCATTTTTGTTCAACCCAGATTCTGGAGAACCAATGAGTATAGCTAATTTTGAACAATATTGTGACAATATAGAAAAAACATCAAC] [+] EMBL CD083578 [GGCACGAGGCAAATGGCTGCGTTACGTAGGC TTTCTGTTAATTTCCCCCAAATTATCGAC TTATCATCTAGATTGATTTTCAAATGACAAAACGTGGAGCTATTCAAGTCTGTTTGTTAAGTTGAAGCTGTTTGCGAAGAATTCTGTCCCTTGTGTTCAGTGAGGAAAAAGATATCTTTGGAGAATATGGATAATACTTGCACTCAGGATAAACTTGCATCGACACAAAAAGTTAGTAAAGCAGCTCGTCGTCGTGAAAAACGGGCTGCTCTTCAACATGCTCAACAGACAGCTGCCCTAAGGAATATACAAGCAGATAGATCTGATAGTCTTCGATCTGTTGAAATGAAAAGGTTAGAAAAGGAACTTTCAGCCCGTCACCTATGTTTATTTGAAGTTCCTTCAGATGGAGATTGCCTTTATCAGTCAATTGGGCATCAATTAAAAATTCGAAATTATCCATTACACGAATTACTAGGAAAGATTGAAATGTCTAATCCAGAAAATCTTAATGATATTAATACCGATCAG ] [+] EMBL AW017255 [ TACGTAGGCTTTTCTGTTAATTTCCCCCAAATTATCGACGTAAGTTATCATCTAGATTGATTTTCAAATGACAAAACGTGGAGCTATTCAAGTCTGTTTGTTAAGTTGAAGCTGTTTGCGAAGAATTCTGTCCCTTGTGTTCAGTGAGGAAAAAGATATCTTTGGAGAATATGGATAATACTTGCACTCAGGATAAACTTGCATCGACACAAAAAGTTAGTAAAGCAGCTCGTCGTCGTGAAAAACGGGCTGCTCTTCAACATGCTCAACAGACAGCTGCCCTAAGGAATATACAAGCAGATAGATCTGATAGTCTTCGATCTGTTGAAATGAAAAGGTTAGAAAAGGAACTTTCAGCCCGTCACCTATGTTTATTTGAAGTTCCTTCAGATGGAGATTGCCTTTATCAGTCAATTGGGCATCAATTAAAAATTCGAAATTATCCATTACACGAATTACTAGGAAAGATTGAAATGTCTAATCCAGAAAATCTTAATGATATTAATACCGATCAGACAATGAAACAAGTGGTGAAAATTTTGCGTCATCTTGCATCGTATCACATTCGCAAGAATATGAATGA ] [+] EMBL CD078648 [ CAAGTCTGTTTGTTAAGTTGAAGCTGTTTGCGAAGAATTCTGTCCCTTGTGTTCAGTGAGGAAAAAGATATCTTTGGAGAATATGGATAATACTTGCACTCAGGATAAACTTGCATCGACACAAAAAGTTAGTAAAGCAGCTCGTCGTCGTGAAAAACGGGCTGCTCTTCAACATGCTCAACAGACAGCTGCCCTAAGGAATATACAAGCAGATAGATCTGATAGTCTTCGATCTGTTGAAATGAAAAGGTTAGAAAAGGAACTTTCAGCCCGTCACCTATGTTTATTTGAAGTTCCTTCAGATGGAGATTGCCTTTATCAGTCAATTGGGCATCAATTAAAAATTCGAAATTATCCATTACACGAATTACTAGGAAAGATTGAAATGTCTAATCCAGAAAATCTTAATGATATTAATACCGATTAGACAATGAAACAAGTGGTGAAAATTTTGCGTCATCTTGCATCGTATCACATTCGCAAGAATATGAATGATTTCCTACCATTTTTGTTCAACCCAGATTCTGGAGAACCAATGAGTATAGCTAATTTTGAACAATATTGTGACAATATAGAAAAAACATCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8803#0 ------------------------------------------------------------ consensus_8803#1 GGCACGAGGCAAATGGCTGCGTTACGTAGGCTTTCTGTTAATTTCCCCCAAATTATCGAC 60 consensus_8803#0 ------------------------------------------------------------ consensus_8803#1 TTATCATCTAGATTGATTTTCAAATGACAAAACGTGGAGCTATTCAAGTCTGTTTGTTAA 120 consensus_8803#0 ------------------------------------------------------------ consensus_8803#1 GTTGAAGCTGTTTGCGAAGAATTCTGTCCCTTGTGTTCAGTGAGGAAAAAGATATCTTTG 180 consensus_8803#0 --CCTCGCGGCCAAAAATTCGGCACGAGG----CTTGCATCGACACAAAAAGTTAGTAAA 54 consensus_8803#1 GAGAATATGGATAATACTTGCACTCAGGATAAACTTGCATCGACACAAAAAGTTAGTAAA 240 ** ** * ** * * * *************************** consensus_8803#0 GCAGCTCGTCGTCGTGAAAAACGGGCTGCTCTTCAACATGCTCAACAGACAGCTGCCCTA 114 consensus_8803#1 GCAGCTCGTCGTCGTGAAAAACGGGCTGCTCTTCAACATGCTCAACAGACAGCTGCCCTA 300 ************************************************************ consensus_8803#0 AGGAATATACAAGCAGATAGATCTGATAGTCTTCGATCTGTTGAAATGAAAAGGTTAGAA 174 consensus_8803#1 AGGAATATACAAGCAGATAGATCTGATAGTCTTCGATCTGTTGAAATGAAAAGGTTAGAA 360 ************************************************************ consensus_8803#0 AAGGAACTTTCAGCCCGTCACCTATGTTTATTTGAAGTTCCTTCAGATGGAGATTGCCTT 234 consensus_8803#1 AAGGAACTTTCAGCCCGTCACCTATGTTTATTTGAAGTTCCTTCAGATGGAGATTGCCTT 420 ************************************************************ consensus_8803#0 TATCAGTCAATTGGGCATCAATTAAAAATTCGAAATTATCCATTACACGAATTACTAGGA 294 consensus_8803#1 TATCAGTCAATTGGGCATCAATTAAAAATTCGAAATTATCCATTACACGAATTACTAGGA 480 ************************************************************ consensus_8803#0 AAGATTGAAATGTCTAATCCAGAAAATCTTAATGATATTAATACCGATCAGACAATGAAA 354 consensus_8803#1 AAGATTGAAATGTCTAATCCAGAAAATCTTAATGATATTAATACCGATCAGACAATGAAA 540 ************************************************************ consensus_8803#0 CAAGTGGTGAAAATTTTGCGTCATCTTGCATCGTATCACATTCGCAAGAATATGAATGAT 414 consensus_8803#1 CAAGTGGTGAAAATTTTGCGTCATCTTGCATCGTATCACATTCGCAAGAATATGAATGAT 600 ************************************************************ consensus_8803#0 TTCCTACCATTTTTGTTCAACCCAGATTCTGGAGAACCAATGAGTATAGCTAATTTTGAA 474 consensus_8803#1 TTCCTACCATTTTTGTTCAACCCAGATTCTGGAGAACCAATGAGTATAGCTAATTTTGAA 660 ************************************************************ consensus_8803#0 CAATATTGTGACAATATAGAAAAAACATCAACGTGGGGTGGACAAATTGAAATCCGTGCC 534 consensus_8803#1 CAATATTGTGACAATATAGAAAAAACATCAAC---------------------------- 692 ******************************** consensus_8803#0 TTATCTACAATGCTTCAACTTCCTATTGAAATATTACAAGCTGAAGGAGTCTCATTAATC 594 consensus_8803#1 ------------------------------------------------------------ consensus_8803#0 ATTGGGGAAGAGTTTTCTGAACAGCCACCAATCACTATTGTATACCACCGTTATGCGTTC 654 consensus_8803#1 ------------------------------------------------------------ consensus_8803#0 GCACTCGGTGAACACTACAATTCCTGTCTAAAGAAACAAGGATTTCAATGATTCCTAAAA 714 consensus_8803#1 ------------------------------------------------------------ consensus_8803#0 GAAAAAGGAATTCCATGTAAATAGTAATCACTAAACCATTGTGTATATTATAACTGTGCT 774 consensus_8803#1 ------------------------------------------------------------ consensus_8803#0 TATATTAATATTTGATCAATATTAGGACTCATTTTTTAAAGGTAAAGCGACTCTAAAATG 834 consensus_8803#1 ------------------------------------------------------------ consensus_8803#0 TAATGTAGTTTCAATAGGCTTCAAAATCTGTTGTATTCAGTGATAACTATCTTTACTGGA 894 consensus_8803#1 ------------------------------------------------------------ consensus_8803#0 ATAAAATACAATACTGTGGATTTCACTATAAAAAATGCTA 934 consensus_8803#1 ---------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||