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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8806#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1124 fasta sequence
[CACGCTTGAACCGCCATTGATCAGATCTGGCCAACAAATAAATTTAGAGAGATGGAGTTTGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACTCGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCGTCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGAGGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAATATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACGAACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATTTTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAATTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTGTATGCACACTTACTAAAGGTCAGTTTATATCGAGTCATCGGATCATCAGTGGAGATACAGTTGTACAGGAAACAATCAAATCCACTCGAAAGAAACAAACATTTAACATTNTATCTCGATTTCTNTACTTACATACTCTTTTATTTTCATTGC-TTTTCACTTTCGGGATGTAATTGTTGGGGGACTTAAATGAAGAAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGGTTACCTGTCAAAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGCAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACGTGGGCGTGAAAGTCCATCATTTCATAGACATACAAGGCGCAGACAAAAATCTTACAGATCCTCCTATCGTTCTGGAAGTTCTCGTAGTGATGAAAGCCTCTATAAACGTAATAAACACCGGAGAAGACAACACTCTCGTCGACGCAGGCATAGATCATCTTCCACTGGTTCTGTGTGTTCGTACAAAAGTCGAAGTGAGTTCTTCTGAACTTACCGCCCATATTG]
[+] EMBL CD079556 [CACGCTTGAACCGCCATTGATCAGATCTGGCCAACAAATAAATTTAGAGAGATGGAGTTTGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACTCGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCGTCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGAGGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAATATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACGAACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATTTTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAATTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTGTATGCACACTTACTAAAGGTCAGTTTATATCGAGTCATCGGATCATCAGTGGAGATACAGTTGTACAGGAAACAATCAAATCCACTCGAAAGAAACAAACATTTAACATTNTATCTCGATTTCTNTACTTA ]
[+] EMBL CD202154 [ CAGGCTACACATTCGACGAACGAACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATTTTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAATTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTGTATGCACACTTACTAAAGGTCAGTTTATATCGAGTCATCGGATCATCAGTGGAGATACAGTTGTACAGGAAACAATCAAATCCACTCGAAAGAAACAAACATTTAACATTTTATCTCGATTTCT TACTTACATACTCTTTTATTTTCATTGC TTTTCACTTTCGGGATGTAATTGTTGGGGGACTTAAATGAAGAAAATGC ]
[-] EMBL CD073823 [ TCA TGCTTTTTCACTTTCGGGATGTAATTGTTGGGGGACTTAAATGAAGAAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGGTTACCTGTCAAAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGCAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACGTGGGCGTGAAAGTCCATCATTTCATAGACATACAAGGCGCAGACAAAAATCTTACAGATCCTCCTATCGTTCTGGAAGTTCTCGTAGTGATGAAAGCCTCTATAAACGTAATAAACACCGGAGAAGACAACACTCTCGTCGACGCAGGCATAGATCATCTTCCACTGGTTCTGTGTGTTCGTACAAAAGTCGAAGTGAGTTCTTCTGAACTTACCGCCCATATTG]
[-] EMBL CD164993 [ AAAAGAAAATGATCATGGTTACCTGTCAAAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGCAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACGTGGGCGTGAAAGTCCATCATTTCATA ]
consensusID : consensus_8806#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 948 fasta sequence
[GGCGGCTTGAACCGCCATTGATCAGGTCTGGCCGACAAATAAATTTAGAGAGATGGAGTTTGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACTCGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCGTCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGAGGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAATATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACGAACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATTTTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAATTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTGTATGCACACTTACTAAAGAAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGGTTACCTGTCANAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGCAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACGTGGGCGTGAAAGTCCATCATTTCATAGACATACAAGGCGCAGACAAAAATCTTACAGATCCTCCTATCGTTCTGGAAGTTCTCGTAGTGATGAAAGCCTCTATAAACGTAATAAACACCGGAGAAGACAACACTCTCGTCGACGCAGGCATAGATCATCTTCCACTGGTTCTGTGTGTTCGTACAAAAGTCGAAGTGAGTTCTTCTGAACTTACCGCCCATATTG]
[+] EMBL CD079346 [GGCGGCTTGAACCGCCATTGATCAGGTCTGGCCGACAAATAAATTTAGAGAGATGGAGTTTGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACTCGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCGTCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGAGGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAATATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACGAACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATTTTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAATTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTGTATGCACACTTACTAAAGAAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGGTTACCTGTCANAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGCAGAAGACGGCGAAGTCGTAGTCACTCTGGTT ]
[+] EMBL CD079347 [GGCGGCTTGAACCGCCATTGATCAGGTCTGGCCGACAAATAAATTTAGAGAGATGGAGTTTGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACTCGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCGTCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGAGGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAATATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACGAACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATTTTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAATTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTGTATGCACACTTACTAAAGAAAATGCAACAGCGCCACAAAGCGGANAAAGAAAATGATCATGGTTACCTGTCANAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGCAG ]
[-] EMBL CD073623 [ AACCGGTGAATATACAAATTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTGTATGCACACTTACTAAAGAAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGGTTACCTGTCAAAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGCAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACGTGGGCGTGAAAGTCCATCATTTCATAGACATACAAGGCGCAGACAAAAATCTTACAGATCCTCCTATCGTTCTGGAAGTTCTCGTAGTGATGAAAGCCTCTATAAACGTAATAAACACCGGAGAAGACAACACTCTCGTCGACGCAGGCATAGATCATCTTCCACTGGTTCTGTGTGTTCGTACAAAAGTCGAAGTGAGTTCTTCTGAACTTACCGCCCATATTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8806#0 -CACGCTTGAACCGCCATTGATCAGATCTGGCCAACAAATAAATTTAGAGAGATGGAGTT 59
consensus_8806#1 GGCGGCTTGAACCGCCATTGATCAGGTCTGGCCGACAAATAAATTTAGAGAGATGGAGTT 60
********************* ******* **************************
consensus_8806#0 TGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACT 119
consensus_8806#1 TGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACT 120
************************************************************
consensus_8806#0 CGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCG 179
consensus_8806#1 CGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCG 180
************************************************************
consensus_8806#0 TCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGA 239
consensus_8806#1 TCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGA 240
************************************************************
consensus_8806#0 GGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAA 299
consensus_8806#1 GGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAA 300
************************************************************
consensus_8806#0 TATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACG 359
consensus_8806#1 TATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACG 360
************************************************************
consensus_8806#0 AACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATT 419
consensus_8806#1 AACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATT 420
************************************************************
consensus_8806#0 TTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAA 479
consensus_8806#1 TTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAA 480
************************************************************
consensus_8806#0 TTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGT 539
consensus_8806#1 TTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGT 540
************************************************************
consensus_8806#0 GTATGCACACTTACTAAAGGTCAGTTTATATCGAGTCATCGGATCATCAGTGGAGATACA 599
consensus_8806#1 GTATGCACACTTACTAAAG----------------------------------------- 559
*******************
consensus_8806#0 GTTGTACAGGAAACAATCAAATCCACTCGAAAGAAACAAACATTTAACATTNTATCTCGA 659
consensus_8806#1 ------------------------------------------------------------
consensus_8806#0 TTTCTNTACTTACATACTCTTTTATTTTCATTGCTTTTCACTTTCGGGATGTAATTGTTG 719
consensus_8806#1 ------------------------------------------------------------
consensus_8806#0 GGGGACTTAAATGAAGAAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGG 779
consensus_8806#1 ----------------AAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGG 603
********************************************
consensus_8806#0 TTACCTGTCAAAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCG 839
consensus_8806#1 TTACCTGTCANAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCG 663
********** *************************************************
consensus_8806#0 CAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACG 899
consensus_8806#1 CAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACG 723
************************************************************
consensus_8806#0 TGGGCGTGAAAGTCCATCATTTCATAGACATACAAGGCGCAGACAAAAATCTTACAGATC 959
consensus_8806#1 TGGGCGTGAAAGTCCATCATTTCATAGACATACAAGGCGCAGACAAAAATCTTACAGATC 783
************************************************************
consensus_8806#0 CTCCTATCGTTCTGGAAGTTCTCGTAGTGATGAAAGCCTCTATAAACGTAATAAACACCG 1019
consensus_8806#1 CTCCTATCGTTCTGGAAGTTCTCGTAGTGATGAAAGCCTCTATAAACGTAATAAACACCG 843
************************************************************
consensus_8806#0 GAGAAGACAACACTCTCGTCGACGCAGGCATAGATCATCTTCCACTGGTTCTGTGTGTTC 1079
consensus_8806#1 GAGAAGACAACACTCTCGTCGACGCAGGCATAGATCATCTTCCACTGGTTCTGTGTGTTC 903
************************************************************
consensus_8806#0 GTACAAAAGTCGAAGTGAGTTCTTCTGAACTTACCGCCCATATTG 1124
consensus_8806#1 GTACAAAAGTCGAAGTGAGTTCTTCTGAACTTACCGCCCATATTG 948
*********************************************
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||