These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8806#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1124 fasta sequence [CACGCTTGAACCGCCATTGATCAGATCTGGCCAACAAATAAATTTAGAGAGATGGAGTTTGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACTCGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCGTCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGAGGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAATATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACGAACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATTTTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAATTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTGTATGCACACTTACTAAAGGTCAGTTTATATCGAGTCATCGGATCATCAGTGGAGATACAGTTGTACAGGAAACAATCAAATCCACTCGAAAGAAACAAACATTTAACATTNTATCTCGATTTCTNTACTTACATACTCTTTTATTTTCATTGC-TTTTCACTTTCGGGATGTAATTGTTGGGGGACTTAAATGAAGAAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGGTTACCTGTCAAAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGCAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACGTGGGCGTGAAAGTCCATCATTTCATAGACATACAAGGCGCAGACAAAAATCTTACAGATCCTCCTATCGTTCTGGAAGTTCTCGTAGTGATGAAAGCCTCTATAAACGTAATAAACACCGGAGAAGACAACACTCTCGTCGACGCAGGCATAGATCATCTTCCACTGGTTCTGTGTGTTCGTACAAAAGTCGAAGTGAGTTCTTCTGAACTTACCGCCCATATTG] [+] EMBL CD079556 [CACGCTTGAACCGCCATTGATCAGATCTGGCCAACAAATAAATTTAGAGAGATGGAGTTTGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACTCGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCGTCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGAGGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAATATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACGAACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATTTTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAATTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTGTATGCACACTTACTAAAGGTCAGTTTATATCGAGTCATCGGATCATCAGTGGAGATACAGTTGTACAGGAAACAATCAAATCCACTCGAAAGAAACAAACATTTAACATTNTATCTCGATTTCTNTACTTA ] [+] EMBL CD202154 [ CAGGCTACACATTCGACGAACGAACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATTTTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAATTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTGTATGCACACTTACTAAAGGTCAGTTTATATCGAGTCATCGGATCATCAGTGGAGATACAGTTGTACAGGAAACAATCAAATCCACTCGAAAGAAACAAACATTTAACATTTTATCTCGATTTCT TACTTACATACTCTTTTATTTTCATTGC TTTTCACTTTCGGGATGTAATTGTTGGGGGACTTAAATGAAGAAAATGC ] [-] EMBL CD073823 [ TCA TGCTTTTTCACTTTCGGGATGTAATTGTTGGGGGACTTAAATGAAGAAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGGTTACCTGTCAAAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGCAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACGTGGGCGTGAAAGTCCATCATTTCATAGACATACAAGGCGCAGACAAAAATCTTACAGATCCTCCTATCGTTCTGGAAGTTCTCGTAGTGATGAAAGCCTCTATAAACGTAATAAACACCGGAGAAGACAACACTCTCGTCGACGCAGGCATAGATCATCTTCCACTGGTTCTGTGTGTTCGTACAAAAGTCGAAGTGAGTTCTTCTGAACTTACCGCCCATATTG] [-] EMBL CD164993 [ AAAAGAAAATGATCATGGTTACCTGTCAAAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGCAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACGTGGGCGTGAAAGTCCATCATTTCATA ] consensusID : consensus_8806#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 948 fasta sequence [GGCGGCTTGAACCGCCATTGATCAGGTCTGGCCGACAAATAAATTTAGAGAGATGGAGTTTGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACTCGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCGTCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGAGGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAATATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACGAACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATTTTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAATTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTGTATGCACACTTACTAAAGAAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGGTTACCTGTCANAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGCAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACGTGGGCGTGAAAGTCCATCATTTCATAGACATACAAGGCGCAGACAAAAATCTTACAGATCCTCCTATCGTTCTGGAAGTTCTCGTAGTGATGAAAGCCTCTATAAACGTAATAAACACCGGAGAAGACAACACTCTCGTCGACGCAGGCATAGATCATCTTCCACTGGTTCTGTGTGTTCGTACAAAAGTCGAAGTGAGTTCTTCTGAACTTACCGCCCATATTG] [+] EMBL CD079346 [GGCGGCTTGAACCGCCATTGATCAGGTCTGGCCGACAAATAAATTTAGAGAGATGGAGTTTGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACTCGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCGTCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGAGGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAATATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACGAACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATTTTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAATTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTGTATGCACACTTACTAAAGAAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGGTTACCTGTCANAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGCAGAAGACGGCGAAGTCGTAGTCACTCTGGTT ] [+] EMBL CD079347 [GGCGGCTTGAACCGCCATTGATCAGGTCTGGCCGACAAATAAATTTAGAGAGATGGAGTTTGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACTCGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCGTCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGAGGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAATATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACGAACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATTTTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAATTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTGTATGCACACTTACTAAAGAAAATGCAACAGCGCCACAAAGCGGANAAAGAAAATGATCATGGTTACCTGTCANAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGCAG ] [-] EMBL CD073623 [ AACCGGTGAATATACAAATTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTGTATGCACACTTACTAAAGAAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGGTTACCTGTCAAAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGCAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACGTGGGCGTGAAAGTCCATCATTTCATAGACATACAAGGCGCAGACAAAAATCTTACAGATCCTCCTATCGTTCTGGAAGTTCTCGTAGTGATGAAAGCCTCTATAAACGTAATAAACACCGGAGAAGACAACACTCTCGTCGACGCAGGCATAGATCATCTTCCACTGGTTCTGTGTGTTCGTACAAAAGTCGAAGTGAGTTCTTCTGAACTTACCGCCCATATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8806#0 -CACGCTTGAACCGCCATTGATCAGATCTGGCCAACAAATAAATTTAGAGAGATGGAGTT 59 consensus_8806#1 GGCGGCTTGAACCGCCATTGATCAGGTCTGGCCGACAAATAAATTTAGAGAGATGGAGTT 60 ********************* ******* ************************** consensus_8806#0 TGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACT 119 consensus_8806#1 TGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACT 120 ************************************************************ consensus_8806#0 CGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCG 179 consensus_8806#1 CGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCG 180 ************************************************************ consensus_8806#0 TCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGA 239 consensus_8806#1 TCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGA 240 ************************************************************ consensus_8806#0 GGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAA 299 consensus_8806#1 GGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAA 300 ************************************************************ consensus_8806#0 TATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACG 359 consensus_8806#1 TATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACG 360 ************************************************************ consensus_8806#0 AACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATT 419 consensus_8806#1 AACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATT 420 ************************************************************ consensus_8806#0 TTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAA 479 consensus_8806#1 TTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAA 480 ************************************************************ consensus_8806#0 TTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGT 539 consensus_8806#1 TTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGT 540 ************************************************************ consensus_8806#0 GTATGCACACTTACTAAAGGTCAGTTTATATCGAGTCATCGGATCATCAGTGGAGATACA 599 consensus_8806#1 GTATGCACACTTACTAAAG----------------------------------------- 559 ******************* consensus_8806#0 GTTGTACAGGAAACAATCAAATCCACTCGAAAGAAACAAACATTTAACATTNTATCTCGA 659 consensus_8806#1 ------------------------------------------------------------ consensus_8806#0 TTTCTNTACTTACATACTCTTTTATTTTCATTGCTTTTCACTTTCGGGATGTAATTGTTG 719 consensus_8806#1 ------------------------------------------------------------ consensus_8806#0 GGGGACTTAAATGAAGAAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGG 779 consensus_8806#1 ----------------AAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGG 603 ******************************************** consensus_8806#0 TTACCTGTCAAAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCG 839 consensus_8806#1 TTACCTGTCANAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCG 663 ********** ************************************************* consensus_8806#0 CAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACG 899 consensus_8806#1 CAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACG 723 ************************************************************ consensus_8806#0 TGGGCGTGAAAGTCCATCATTTCATAGACATACAAGGCGCAGACAAAAATCTTACAGATC 959 consensus_8806#1 TGGGCGTGAAAGTCCATCATTTCATAGACATACAAGGCGCAGACAAAAATCTTACAGATC 783 ************************************************************ consensus_8806#0 CTCCTATCGTTCTGGAAGTTCTCGTAGTGATGAAAGCCTCTATAAACGTAATAAACACCG 1019 consensus_8806#1 CTCCTATCGTTCTGGAAGTTCTCGTAGTGATGAAAGCCTCTATAAACGTAATAAACACCG 843 ************************************************************ consensus_8806#0 GAGAAGACAACACTCTCGTCGACGCAGGCATAGATCATCTTCCACTGGTTCTGTGTGTTC 1079 consensus_8806#1 GAGAAGACAACACTCTCGTCGACGCAGGCATAGATCATCTTCCACTGGTTCTGTGTGTTC 903 ************************************************************ consensus_8806#0 GTACAAAAGTCGAAGTGAGTTCTTCTGAACTTACCGCCCATATTG 1124 consensus_8806#1 GTACAAAAGTCGAAGTGAGTTCTTCTGAACTTACCGCCCATATTG 948 ********************************************* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||