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Schistosoma mansoni
cluster # 8806 cluster # 8806       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8806#0 length = 1124 sequences # 4  
consensus_8806#1 length = 948 sequences # 3  

consensusID : consensus_8806#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1124
fasta sequence
                              [CACGCTTGAACCGCCATTGATCAGATCTGGCCAACAAATAAATTTAGAGAGATGGAGTTTGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACTCGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCGTCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGAGGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAATATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACGAACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATTTTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAATTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTGTATGCACACTTACTAAAGGTCAGTTTATATCGAGTCATCGGATCATCAGTGGAGATACAGTTGTACAGGAAACAATCAAATCCACTCGAAAGAAACAAACATTTAACATTNTATCTCGATTTCTNTACTTACATACTCTTTTATTTTCATTGC-TTTTCACTTTCGGGATGTAATTGTTGGGGGACTTAAATGAAGAAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGGTTACCTGTCAAAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGCAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACGTGGGCGTGAAAGTCCATCATTTCATAGACATACAAGGCGCAGACAAAAATCTTACAGATCCTCCTATCGTTCTGGAAGTTCTCGTAGTGATGAAAGCCTCTATAAACGTAATAAACACCGGAGAAGACAACACTCTCGTCGACGCAGGCATAGATCATCTTCCACTGGTTCTGTGTGTTCGTACAAAAGTCGAAGTGAGTTCTTCTGAACTTACCGCCCATATTG]

[+] EMBL CD079556             [CACGCTTGAACCGCCATTGATCAGATCTGGCCAACAAATAAATTTAGAGAGATGGAGTTTGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACTCGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCGTCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGAGGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAATATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACGAACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATTTTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAATTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTGTATGCACACTTACTAAAGGTCAGTTTATATCGAGTCATCGGATCATCAGTGGAGATACAGTTGTACAGGAAACAATCAAATCCACTCGAAAGAAACAAACATTTAACATTNTATCTCGATTTCTNTACTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD202154             [                                                                                                                                                                                                                                                                                                                                                 CAGGCTACACATTCGACGAACGAACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATTTTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAATTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTGTATGCACACTTACTAAAGGTCAGTTTATATCGAGTCATCGGATCATCAGTGGAGATACAGTTGTACAGGAAACAATCAAATCCACTCGAAAGAAACAAACATTTAACATTTTATCTCGATTTCT TACTTACATACTCTTTTATTTTCATTGC TTTTCACTTTCGGGATGTAATTGTTGGGGGACTTAAATGAAGAAAATGC                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD073823             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TCA TGCTTTTTCACTTTCGGGATGTAATTGTTGGGGGACTTAAATGAAGAAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGGTTACCTGTCAAAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGCAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACGTGGGCGTGAAAGTCCATCATTTCATAGACATACAAGGCGCAGACAAAAATCTTACAGATCCTCCTATCGTTCTGGAAGTTCTCGTAGTGATGAAAGCCTCTATAAACGTAATAAACACCGGAGAAGACAACACTCTCGTCGACGCAGGCATAGATCATCTTCCACTGGTTCTGTGTGTTCGTACAAAAGTCGAAGTGAGTTCTTCTGAACTTACCGCCCATATTG]
[-] EMBL CD164993             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAAAGAAAATGATCATGGTTACCTGTCAAAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGCAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACGTGGGCGTGAAAGTCCATCATTTCATA                                                                                                                                                                                                       ]


>consensus_8806#0 CACGCTTGAACCGCCATTGATCAGATCTGGCCAACAAATAAATTTAGAGAGATGGAGTTT GATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACTC GAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCGT CTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGAG GTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAAT ATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACGA ACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATTT TACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAAT TATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTG TATGCACACTTACTAAAGGTCAGTTTATATCGAGTCATCGGATCATCAGTGGAGATACAG TTGTACAGGAAACAATCAAATCCACTCGAAAGAAACAAACATTTAACATTNTATCTCGAT TTCTNTACTTACATACTCTTTTATTTTCATTGCTTTTCACTTTCGGGATGTAATTGTTGG GGGACTTAAATGAAGAAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGGT TACCTGTCAAAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGC AGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACGT GGGCGTGAAAGTCCATCATTTCATAGACATACAAGGCGCAGACAAAAATCTTACAGATCC TCCTATCGTTCTGGAAGTTCTCGTAGTGATGAAAGCCTCTATAAACGTAATAAACACCGG AGAAGACAACACTCTCGTCGACGCAGGCATAGATCATCTTCCACTGGTTCTGTGTGTTCG TACAAAAGTCGAAGTGAGTTCTTCTGAACTTACCGCCCATATTG



consensusID : consensus_8806#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 948
fasta sequence
                              [GGCGGCTTGAACCGCCATTGATCAGGTCTGGCCGACAAATAAATTTAGAGAGATGGAGTTTGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACTCGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCGTCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGAGGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAATATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACGAACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATTTTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAATTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTGTATGCACACTTACTAAAGAAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGGTTACCTGTCANAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGCAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACGTGGGCGTGAAAGTCCATCATTTCATAGACATACAAGGCGCAGACAAAAATCTTACAGATCCTCCTATCGTTCTGGAAGTTCTCGTAGTGATGAAAGCCTCTATAAACGTAATAAACACCGGAGAAGACAACACTCTCGTCGACGCAGGCATAGATCATCTTCCACTGGTTCTGTGTGTTCGTACAAAAGTCGAAGTGAGTTCTTCTGAACTTACCGCCCATATTG]

[+] EMBL CD079346             [GGCGGCTTGAACCGCCATTGATCAGGTCTGGCCGACAAATAAATTTAGAGAGATGGAGTTTGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACTCGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCGTCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGAGGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAATATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACGAACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATTTTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAATTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTGTATGCACACTTACTAAAGAAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGGTTACCTGTCANAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGCAGAAGACGGCGAAGTCGTAGTCACTCTGGTT                                                                                                                                                                                                                                                             ]
[+] EMBL CD079347             [GGCGGCTTGAACCGCCATTGATCAGGTCTGGCCGACAAATAAATTTAGAGAGATGGAGTTTGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACTCGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCGTCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGAGGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAATATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACGAACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATTTTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAATTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTGTATGCACACTTACTAAAGAAAATGCAACAGCGCCACAAAGCGGANAAAGAAAATGATCATGGTTACCTGTCANAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGCAG                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD073623             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AACCGGTGAATATACAAATTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGTGTATGCACACTTACTAAAGAAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGGTTACCTGTCAAAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCGCAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACGTGGGCGTGAAAGTCCATCATTTCATAGACATACAAGGCGCAGACAAAAATCTTACAGATCCTCCTATCGTTCTGGAAGTTCTCGTAGTGATGAAAGCCTCTATAAACGTAATAAACACCGGAGAAGACAACACTCTCGTCGACGCAGGCATAGATCATCTTCCACTGGTTCTGTGTGTTCGTACAAAAGTCGAAGTGAGTTCTTCTGAACTTACCGCCCATATTG]


>consensus_8806#1 GGCGGCTTGAACCGCCATTGATCAGGTCTGGCCGACAAATAAATTTAGAGAGATGGAGTT TGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACT CGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCG TCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGA GGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAA TATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACG AACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATT TTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAA TTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGT GTATGCACACTTACTAAAGAAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCA TGGTTACCTGTCANAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCA TCGCAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAA ACGTGGGCGTGAAAGTCCATCATTTCATAGACATACAAGGCGCAGACAAAAATCTTACAG ATCCTCCTATCGTTCTGGAAGTTCTCGTAGTGATGAAAGCCTCTATAAACGTAATAAACA CCGGAGAAGACAACACTCTCGTCGACGCAGGCATAGATCATCTTCCACTGGTTCTGTGTG TTCGTACAAAAGTCGAAGTGAGTTCTTCTGAACTTACCGCCCATATTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8806#0      -CACGCTTGAACCGCCATTGATCAGATCTGGCCAACAAATAAATTTAGAGAGATGGAGTT 59
consensus_8806#1      GGCGGCTTGAACCGCCATTGATCAGGTCTGGCCGACAAATAAATTTAGAGAGATGGAGTT 60
                          ********************* ******* **************************

consensus_8806#0      TGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACT 119
consensus_8806#1      TGATGTATTTGAGAAGTTAAGTGAACTGGAGACTGAAATCCACATTTTGAAGAAGGAACT 120
                      ************************************************************

consensus_8806#0      CGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCG 179
consensus_8806#1      CGAAGAAAAAGATGCATTTATTCAAAACCTGATGGACAAAAATACAGACTTGGAACGCCG 180
                      ************************************************************

consensus_8806#0      TCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGA 239
consensus_8806#1      TCTACTGTCTCTCGATCAAAACAGTTTGACCGGTGAAAATAATTTACCACGTTTAAAAGA 240
                      ************************************************************

consensus_8806#0      GGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAA 299
consensus_8806#1      GGTTGCTCCCAACGGTTCGAATACAACCGACTCTAAAACATATGGTGCATCAATAGCTAA 300
                      ************************************************************

consensus_8806#0      TATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACG 359
consensus_8806#1      TATGCTTAAAGAAACATCAGAAGCTGTTGTACGTAATACAGGCTACACATTCGACGAACG 360
                      ************************************************************

consensus_8806#0      AACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATT 419
consensus_8806#1      AACTGGTTTGTATTATGATCATAAGAGTGGCTACTATTATGATCCGGAGAATCAATTATT 420
                      ************************************************************

consensus_8806#0      TTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAA 479
consensus_8806#1      TTACGAACCCAAAACGGGGACATACTATAAATATAATTCAGAAACCGGTGAATATACAAA 480
                      ************************************************************

consensus_8806#0      TTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGT 539
consensus_8806#1      TTATACCGCATCAGAAGATGATGCTATGAATAGCAAATTCAAGGAATTCGCTCATCCGGT 540
                      ************************************************************

consensus_8806#0      GTATGCACACTTACTAAAGGTCAGTTTATATCGAGTCATCGGATCATCAGTGGAGATACA 599
consensus_8806#1      GTATGCACACTTACTAAAG----------------------------------------- 559
                      *******************                                         

consensus_8806#0      GTTGTACAGGAAACAATCAAATCCACTCGAAAGAAACAAACATTTAACATTNTATCTCGA 659
consensus_8806#1      ------------------------------------------------------------
                                                                                  

consensus_8806#0      TTTCTNTACTTACATACTCTTTTATTTTCATTGCTTTTCACTTTCGGGATGTAATTGTTG 719
consensus_8806#1      ------------------------------------------------------------
                                                                                  

consensus_8806#0      GGGGACTTAAATGAAGAAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGG 779
consensus_8806#1      ----------------AAAATGCAACAGCGCCACAAAGCGGAAAAAGAAAATGATCATGG 603
                                      ********************************************

consensus_8806#0      TTACCTGTCAAAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCG 839
consensus_8806#1      TTACCTGTCANAGACTGTATCTAGACATAGTCGATCAACAAGCAGTGATATTGGTCATCG 663
                      ********** *************************************************

consensus_8806#0      CAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACG 899
consensus_8806#1      CAGAAGACGGCGAAGTCGTAGTCACTCTGGTTCGCACTGCTGTCGTTCGTACTACAAACG 723
                      ************************************************************

consensus_8806#0      TGGGCGTGAAAGTCCATCATTTCATAGACATACAAGGCGCAGACAAAAATCTTACAGATC 959
consensus_8806#1      TGGGCGTGAAAGTCCATCATTTCATAGACATACAAGGCGCAGACAAAAATCTTACAGATC 783
                      ************************************************************

consensus_8806#0      CTCCTATCGTTCTGGAAGTTCTCGTAGTGATGAAAGCCTCTATAAACGTAATAAACACCG 1019
consensus_8806#1      CTCCTATCGTTCTGGAAGTTCTCGTAGTGATGAAAGCCTCTATAAACGTAATAAACACCG 843
                      ************************************************************

consensus_8806#0      GAGAAGACAACACTCTCGTCGACGCAGGCATAGATCATCTTCCACTGGTTCTGTGTGTTC 1079
consensus_8806#1      GAGAAGACAACACTCTCGTCGACGCAGGCATAGATCATCTTCCACTGGTTCTGTGTGTTC 903
                      ************************************************************

consensus_8806#0      GTACAAAAGTCGAAGTGAGTTCTTCTGAACTTACCGCCCATATTG 1124
consensus_8806#1      GTACAAAAGTCGAAGTGAGTTCTTCTGAACTTACCGCCCATATTG 948
                      *********************************************




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)