cluster # 8808

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Schistosoma mansoni
cluster # 8808 cluster # 8808 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8808#0 length = 796 sequences # 4

consensus_8808#1 length = 568 sequences # 2
consensus_8808#2 length = 467 sequences # 1

consensusID : consensus_8808#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 796
fasta sequence

                              [AATTTGGCACGAGGGGCCAAATGCAATCACTAACAATGTCGACTCATCAAATGATTTTCCTCCGGAAATGGATAACGAAGTTTTAGAAGCAGATCTTGAGGAAAAACAGCGCCTAATAAGTCAGATTTTGGAGCTACAACATACACTTGAGGATTTATCCACACGGGTAGATGCTGTGAAAGAAGAAAATTTAAAATTACGTTCTGAAAATCAAATTCTTGGTCAATATATTGAAAATATGATGGCGAATTCATCAGTTTTTCAATCAACATCACCGCGTATTGATGAAAATAGGTCACGTTCAAATAAAAGAGTTGGAAGATGATTATAAGAGAATGATATATATATCACATACAATAAGGTTGACTATAAATGCTGAAGTTAAAGATAGGGATAATTAAACTTTTCAAACTTCATTCCCCTTGATTTCTTAGGACCTAATAGTTCTGCGAATTTCAGAGTTTTGAGATCACGACAGTGACAATAATATTTGCGGTGTTGGATTTCAGCTATTTTCCCATCTTGGAATATTTCTCTTTGTAACTCTTTAAGCTGATCATCTTTGTTGTCTTTCTACTGCGCTTACAATAAACAAAGCACTTGCAATAAAATCAACGATAATATTAGTTATGTTCAAATGAATGATGGCTNTTCTGTTGTTTTTAACTTCTTATTTTATGATCATGTGATCTTCATTNTATTATATTGATACGCTNTTAGTTNTATCTGTACCTGAAGAAA-TACATATGCATTTATATGTTAGCAAAGT-AAGTGTCAATTAGTCAAAAAAAGTTAA]

[+] EMBL CD079474             [AATTTGGCACGAGGGGCCAAATGCAATCACTAACAATGTCGACTCATCAAATGATTTTCCTCCGGAAATGGATAACGAAGTTTTAGAAGCAGATCTTGAGGAAAAACAGCGCCTAATAAGTCAGATTTTGGAGCTACAACATACACTTGAGGATTTATCCACACGGGTAGATGCTGTGAAAGAAGAAAATTTAAAATTACGTTCTGAAAATCAAATTCTTGGTCAATATATTGAAAATATGATGGCGAATTCATCAGTTTTTCAATCAACATCACCGCGTATTGATGAAAATAGGTCACGTTCAAATAAAAGAGTTGGAAGATGATTATAAGAGAATGATATATATATCACATACAATAAGGTTGACTATAAATGCTGAAGTTAAAGATAGGGATAATTAAACTTTTCAAACTTCATTCCCCTTGATTTCTTAGGACCTAATAGTTCTGCGAATTTCAGAGTTTTGAGATCACGACAGTGACAATAATATTTGCGGTGTTGGATTTCAGCTATTTTCCCATCTTGGAATATTTCTCTTTGTAACTCTTTAAGCTGATCATCTTTGTTGTCTTTCTACTGCGCTTACAATAAACAAAGCACTTGCAATAAAATCAACGATAATATTAGTTATGTTCAAATGAATGATGGCTNTTCTGTTGTTTTTAACTTCTTATTTTATGATCATGTGATCTTCATTNTATTATATTGATACGCTNTTAGTTNTATCTGTACCTGAAGAAA TACATATGCATTTATATGTTAGCAAAGT AAGTGT                     ]
[-] EMBL CD073744             [                                                                                                              GCCTAATAAGTCAGATTTTGGAGCTACAACATACACTTGAGGATTTATCCACACGGGTAGATGCTGTGAAAGAAGAAAATTTAAAATTACGTTCTGAAAATCAAATTCTTGGTCAATATATTGAAAATATGATGGCGAATTCATCAGTTTTTCAATCAACATCACCGCGTATTGATGAAAATAGGTCACGTTCAAATAAAAGAGTTGGAAGATGATTATAAGAGAATGATATATATATCACATACAATAAGGTTGACTATAAATGCTGAAGTTAAAGATAGGGATAATTAAACTTTTCAAACTTCATTCCCCTTGATTTCTTAGGACCTAATAGTTCTGCGAATTTCAGAGTTTTGAGATCACGACAGTGACAATAATATTTGCGGTGTTGGATTTCAGCTATTTTCCCATCTTGGAATATTTCTCTTTGTAACTCTTTAAGCTGATCATCTTTGTTGTCTTTCTACTGCGCTTACAATAAACAAAGCACTTGCAATAAAATCAACGATAATATTAGTTATGTTCAAATGAATGATGGCTTTTCTGTTGTTTTTAACTTCTTATTTTATGATCATGTGATCTTCATTTTATTATATTGATACGCTTTTAGTTTTATCTGTACCTGAAGAAATTGCATATGCATTTATATGTAAAC AAGTAAAGTGTCAATTAGTCAAAAAAAGTTAA]
[+] EMBL CD197238             [                                                                                                                                                                ACACGGGTAGATGCTGTGAAAGAAGAAAATTTAAAATTACGTTCTGAAAATCAAATTCTTGGTCAATATATTGAAAATATGATGGCGAATTCATCAGTTTTTCAATCAACATCACCGCGTATTGATGAAAATAGGTCACGTTCAAATAAAAGAGTTGGAAGATGATTATAAGAGAATGATATATATATCACATACAATAAGGTTGACTATAAATGCTGAAGTTAAAGATAGGGATAATTAAACTTTTCAAACTTCATTCCCCTTGATTTCTTAGGACCTAATAGTTCCGCGAATTTCAGAGTTTTGAGATCACGACAGTGACAATAATATTTGCGGTGTTGGATTTCAGCTATTTTCCCATCTTGGAATATTTCTCTTTGTAACTCTTTAAGCTGATCATCTTTGTTGTCTTTCTACTGCGCTTACAATAAACAA                                                                                                                                                                                                           ]
[-] EMBL CD197114             [                                                                                                                                                                 CACGGGTAGATGCTGTGAAAGAAGAAAATTTAAAATTACGTTCTGAAAATCAAATTCTTGGTCAATATATTGAAAATATGATGGCGAATTCATCAGTTTTTCAATCAACATCACCGCGTATTGATGAAAATAGGTCACGTTCAAATAAAAGAGTTGGAAGATGATTATAAGAGAATGATATATATATCACATACAATAAGGTTGACTATAAATGCTGAAGTTAAAGATAGGGATAATTAAACTTTTCAAACTTCATTCCCCTTGATTTCTTAGGACCTAATAGTTCTGCGAATTTCAGAGTTTTGAGATCACGACAGTGACAATAATATTTGCGGTGTTGGATTTCAGCTATTTTCCCATCTT                                                                                                                                                                                                                                                                                  ]




>consensus_8808#0
AATTTGGCACGAGGGGCCAAATGCAATCACTAACAATGTCGACTCATCAAATGATTTTCC
TCCGGAAATGGATAACGAAGTTTTAGAAGCAGATCTTGAGGAAAAACAGCGCCTAATAAG
TCAGATTTTGGAGCTACAACATACACTTGAGGATTTATCCACACGGGTAGATGCTGTGAA
AGAAGAAAATTTAAAATTACGTTCTGAAAATCAAATTCTTGGTCAATATATTGAAAATAT
GATGGCGAATTCATCAGTTTTTCAATCAACATCACCGCGTATTGATGAAAATAGGTCACG
TTCAAATAAAAGAGTTGGAAGATGATTATAAGAGAATGATATATATATCACATACAATAA
GGTTGACTATAAATGCTGAAGTTAAAGATAGGGATAATTAAACTTTTCAAACTTCATTCC
CCTTGATTTCTTAGGACCTAATAGTTCTGCGAATTTCAGAGTTTTGAGATCACGACAGTG
ACAATAATATTTGCGGTGTTGGATTTCAGCTATTTTCCCATCTTGGAATATTTCTCTTTG
TAACTCTTTAAGCTGATCATCTTTGTTGTCTTTCTACTGCGCTTACAATAAACAAAGCAC
TTGCAATAAAATCAACGATAATATTAGTTATGTTCAAATGAATGATGGCTNTTCTGTTGT
TTTTAACTTCTTATTTTATGATCATGTGATCTTCATTNTATTATATTGATACGCTNTTAG
TTNTATCTGTACCTGAAGAAATACATATGCATTTATATGTTAGCAAAGTAAGTGTCAATT
AGTCAAAAAAAGTTAA

consensusID : consensus_8808#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 568
fasta sequence

                              [AGCCATAATTCGGCACGCAGGCGAATTCATNCAGTTTTTCAATCAACATCACCGCGTATTGATGAAAATAGGTCACGTTCAAATAAAAGAGTTGGAAGATGATTATAAGAGAATGATATATATATCACATACAATAAGGTTGACTATAAATGCTGAAGTTAAGATAGGGATAATTAAACTTTTCAAACTTCATTCCCCTTGATTTCTTAGGACCTAATAGTTCTGCGAATTTCAGAGTTTTGAGATCACGACAGTGACAATAATATTTGCGGTGTTGGATTTCAGCTATTTTCCCATCTTGGAATATTTCTCTTTGTAACTCTTTAAGCTGATCATCTTTGTTGTCTTTCTACTGCGCTTACAATAAACAAAGCACTTGCAATAAAATCAACGATAATATTAGTTATGTTCAAATGAATGATGGCTTTTCTGTTGTTTTTAACTTCTTATTTTATGATCATGTGATCTTCATTTTATTATATTGATACGCTTTTAGTTTTATCTGTACCTGAAGAAATTACATATGCATTTATATGTTAGCAAGTAAAGTGTCAATTATGTCTGCTTT]

[+] EMBL CD081622             [AGCCATAATTCGGCACGCAGGCGAATTCATNCAGTTTTTCAATCAACATCACCGCGTATTGATGAAAATAGGTCACGTTCAAATAAAAGAGTTGGAAGATGATTATAAGAGAATGATATATATATCACATACAATAAGGTTGACTATAAATGCTGAAGTTAAGATAGGGATAATTAAACTTTTCAAACTTCATTCCCCTTGATTTCTTAGGACCTAATAGTTCTGCGAATTTCAGAGTTTTGAGATCACGACAGTGACAATAATATTTGCGGTGTTGGATTTCAGCTATTTTCCCATCTTGGAATATTTCTCTTTGTAACTCTTTAAGCTGATCATCTTTGTTGTCTTTCTACTGCGCTTACAATAAACAAAGCACTTGCAATAAAATCAACGATAATATTAGTTATGTTCAAATGAATGATGGCTTTTCTGTTGTTTTTAACTTCTTATTTTATGATCATGTGATCTTCATTTTATTATATTGATACGCTTTTAGTTTTATCTGTACCTGAAGAAATTACATATGCATTTATATGTTAGCAAGTAAAGTGTCAATTATGTCTGCTT ]
[-] EMBL CD075444             [                      GAATTCAT CAGTTTTTCAATCAACATCACCGCGTATTGATGAAAATAGGTCACGTTCAAATAAAAGAGTTGGAAGATGATTATAAGAGAATGATATATATATCACATACAATAAGGTTGACTATAAATGCTGAAGTTAAGATAGGGATAATTAAACTTTTCAAACTTCATTCCCCTTGATTTCTTAGGACCTAATAGTTCTGCGAATTTCAGAGTTTTGAGATCACGACAGTGACAATAATATTTGCGGTGTTGGATTTCAGCTATTTTCCCATCTTGGAATATTTCTCTTTGTAACTCTTTAAGCTGATCATCTTTGTTGTCTTTCTACTGCGCTTACAATAAACAAAGCACTTGCAATAAAATCAACGATAATATTAGTTATGTTCAAATGAATGATGGCTTTTCTGTTGTTTTTAACTTCTTATTTTATGATCATGTGATCTTCATTTTATTATATTGATACGCTTTTAGTTTTATCTGTACCTGAAGAAATTACATATGCATTTATATGTTAGCAAGTAAAGTGTCAATTATGTCTGCTTT]




>consensus_8808#1
AGCCATAATTCGGCACGCAGGCGAATTCATNCAGTTTTTCAATCAACATCACCGCGTATT
GATGAAAATAGGTCACGTTCAAATAAAAGAGTTGGAAGATGATTATAAGAGAATGATATA
TATATCACATACAATAAGGTTGACTATAAATGCTGAAGTTAAGATAGGGATAATTAAACT
TTTCAAACTTCATTCCCCTTGATTTCTTAGGACCTAATAGTTCTGCGAATTTCAGAGTTT
TGAGATCACGACAGTGACAATAATATTTGCGGTGTTGGATTTCAGCTATTTTCCCATCTT
GGAATATTTCTCTTTGTAACTCTTTAAGCTGATCATCTTTGTTGTCTTTCTACTGCGCTT
ACAATAAACAAAGCACTTGCAATAAAATCAACGATAATATTAGTTATGTTCAAATGAATG
ATGGCTTTTCTGTTGTTTTTAACTTCTTATTTTATGATCATGTGATCTTCATTTTATTAT
ATTGATACGCTTTTAGTTTTATCTGTACCTGAAGAAATTACATATGCATTTATATGTTAG
CAAGTAAAGTGTCAATTATGTCTGCTTT

consensusID : consensus_8808#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence

                              [GGATTTATCCACACGGGTAGATGCTGTGAAAGAAGAAAATTTAAAATTACGTTCTGAAAATCAAATTCCTGGTCAATATATTGAAAATATGATGGCGAATTCATCAGTTTTTCAATCAACATCACCGCGTATTGATGAAAATAGGTCACGTTCAAATAAAAGAGTTGGAAGATGATTATAAGAGAATGATATATATATCACATACAATAAGGTTGACTATAAATGCTGAAGTTAAAGATAGGGATAATTAAACTTTCCAAACTTCATTCCCCTTGATTTCTTAGGACCTAATAGTTCTGCGAATTTCAGAGTTTTGAGATCACGACAGTGACAATAATATTTGCGGTGTTGGATTTCAGCTATTTTCCCATCTTGGAATATTCCTCTTTGTAACTCTTTAAGCTGATCATCTTTGTTGTCTTTCTACTGCGCTTACAATAAACAAAGCACTTCACTCCACGCCTCTG]

[-] EMBL CD063869             [GGATTTATCCACACGGGTAGATGCTGTGAAAGAAGAAAATTTAAAATTACGTTCTGAAAATCAAATTCCTGGTCAATATATTGAAAATATGATGGCGAATTCATCAGTTTTTCAATCAACATCACCGCGTATTGATGAAAATAGGTCACGTTCAAATAAAAGAGTTGGAAGATGATTATAAGAGAATGATATATATATCACATACAATAAGGTTGACTATAAATGCTGAAGTTAAAGATAGGGATAATTAAACTTTCCAAACTTCATTCCCCTTGATTTCTTAGGACCTAATAGTTCTGCGAATTTCAGAGTTTTGAGATCACGACAGTGACAATAATATTTGCGGTGTTGGATTTCAGCTATTTTCCCATCTTGGAATATTCCTCTTTGTAACTCTTTAAGCTGATCATCTTTGTTGTCTTTCTACTGCGCTTACAATAAACAAAGCACTTCACTCCACGCCTCTG]




>consensus_8808#2
GGATTTATCCACACGGGTAGATGCTGTGAAAGAAGAAAATTTAAAATTACGTTCTGAAAA
TCAAATTCCTGGTCAATATATTGAAAATATGATGGCGAATTCATCAGTTTTTCAATCAAC
ATCACCGCGTATTGATGAAAATAGGTCACGTTCAAATAAAAGAGTTGGAAGATGATTATA
AGAGAATGATATATATATCACATACAATAAGGTTGACTATAAATGCTGAAGTTAAAGATA
GGGATAATTAAACTTTCCAAACTTCATTCCCCTTGATTTCTTAGGACCTAATAGTTCTGC
GAATTTCAGAGTTTTGAGATCACGACAGTGACAATAATATTTGCGGTGTTGGATTTCAGC
TATTTTCCCATCTTGGAATATTCCTCTTTGTAACTCTTTAAGCTGATCATCTTTGTTGTC
TTTCTACTGCGCTTACAATAAACAAAGCACTTCACTCCACGCCTCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8808#0      AATTTGGCACGAGGGGCCAAATGCAATCACTAACAATGTCGACTCATCAAATGATTTTCC 60
consensus_8808#2      ------------------------------------------------------------
consensus_8808#1      ------------------------------------------------------------
                                                                                  

consensus_8808#0      TCCGGAAATGGATAACGAAGTTTTAGAAGCAGATCTTGAGGAAAAACAGCGCCTAATAAG 120
consensus_8808#2      ------------------------------------------------------------
consensus_8808#1      ------------------------------------------------------------
                                                                                  

consensus_8808#0      TCAGATTTTGGAGCTACAACATACACTTGAGGATTTATCCACACGGGTAGATGCTGTGAA 180
consensus_8808#2      ------------------------------GGATTTATCCACACGGGTAGATGCTGTGAA 30
consensus_8808#1      ------------------------------------------------------------
                                                                                  

consensus_8808#0      AGAAGAAAATTTAAAATTACGTTCTGAAAATCAAATTCTTGGTCAATATATTGAAAATAT 240
consensus_8808#2      AGAAGAAAATTTAAAATTACGTTCTGAAAATCAAATTCCTGGTCAATATATTGAAAATAT 90
consensus_8808#1      -----------------------------------------AGCCATAATTCGG---CAC 16
                                                                 * ***  * *     * 

consensus_8808#0      GATGGCGAATTCATC-AGTTTTTCAATCAACATCACCGCGTATTGATGAAAATAGGTCAC 299
consensus_8808#2      GATGGCGAATTCATC-AGTTTTTCAATCAACATCACCGCGTATTGATGAAAATAGGTCAC 149
consensus_8808#1      GCAGGCGAATTCATNCAGTTTTTCAATCAACATCACCGCGTATTGATGAAAATAGGTCAC 76
                      *  ***********  ********************************************

consensus_8808#0      GTTCAAATAAAAGAGTTGGAAGATGATTATAAGAGAATGATATATATATCACATACAATA 359
consensus_8808#2      GTTCAAATAAAAGAGTTGGAAGATGATTATAAGAGAATGATATATATATCACATACAATA 209
consensus_8808#1      GTTCAAATAAAAGAGTTGGAAGATGATTATAAGAGAATGATATATATATCACATACAATA 136
                      ************************************************************

consensus_8808#0      AGGTTGACTATAAATGCTGAAGTTAAAGATAGGGATAATTAAACTTTTCAAACTTCATTC 419
consensus_8808#2      AGGTTGACTATAAATGCTGAAGTTAAAGATAGGGATAATTAAACTTTCCAAACTTCATTC 269
consensus_8808#1      AGGTTGACTATAAATGCTGAAGTTAA-GATAGGGATAATTAAACTTTTCAAACTTCATTC 195
                      ************************** ******************** ************

consensus_8808#0      CCCTTGATTTCTTAGGACCTAATAGTTCTGCGAATTTCAGAGTTTTGAGATCACGACAGT 479
consensus_8808#2      CCCTTGATTTCTTAGGACCTAATAGTTCTGCGAATTTCAGAGTTTTGAGATCACGACAGT 329
consensus_8808#1      CCCTTGATTTCTTAGGACCTAATAGTTCTGCGAATTTCAGAGTTTTGAGATCACGACAGT 255
                      ************************************************************

consensus_8808#0      GACAATAATATTTGCGGTGTTGGATTTCAGCTATTTTCCCATCTTGGAATATTTCTCTTT 539
consensus_8808#2      GACAATAATATTTGCGGTGTTGGATTTCAGCTATTTTCCCATCTTGGAATATTCCTCTTT 389
consensus_8808#1      GACAATAATATTTGCGGTGTTGGATTTCAGCTATTTTCCCATCTTGGAATATTTCTCTTT 315
                      ***************************************************** ******

consensus_8808#0      GTAACTCTTTAAGCTGATCATCTTTGTTGTCTTTCTACTGCGCTTACAATAAACAAAGCA 599
consensus_8808#2      GTAACTCTTTAAGCTGATCATCTTTGTTGTCTTTCTACTGCGCTTACAATAAACAAAGCA 449
consensus_8808#1      GTAACTCTTTAAGCTGATCATCTTTGTTGTCTTTCTACTGCGCTTACAATAAACAAAGCA 375
                      ************************************************************

consensus_8808#0      CTTGCAATAAAATCAACGATAATATTAGTTATGTTCAAATGAATGATGGCTNTTCTGTTG 659
consensus_8808#2      CTTCACTCCACGCCTCTG------------------------------------------ 467
consensus_8808#1      CTTGCAATAAAATCAACGATAATATTAGTTATGTTCAAATGAATGATGGCTTTTCTGTTG 435
                      ***      *   *   *                                          

consensus_8808#0      TTTTTAACTTCTTATTTTATGATCATGTGATCTTCATTNTATTATATTGATACGCTNTTA 719
consensus_8808#2      ------------------------------------------------------------
consensus_8808#1      TTTTTAACTTCTTATTTTATGATCATGTGATCTTCATTTTATTATATTGATACGCTTTTA 495
                                                                                  

consensus_8808#0      GTTNTATCTGTACCTGAAGAAATACATATGCATTTATATGTTAGCAAAGTAAGTGTCAAT 779
consensus_8808#2      ------------------------------------------------------------
consensus_8808#1      GTTTTATCTGTACCTGAAGAAATTACATATGCATTTATATGTTAGCAAGTAAAGTGTCAA 555
                                                                                  

consensus_8808#0      TAGTCAAAAAAAGTTAA 796
consensus_8808#2      -----------------
consensus_8808#1      TTATGTCTGCTTT---- 568