These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8810#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1339 fasta sequence [ATGTGCAATAGTAGGTTCTGACAAACACTGCAAAAGTTCATAATGCAGATCCGAATACAGTTGGATATCAACTTGACACTTTCATCTTGTTTCGATTTGTAAGAGTAACCAATTATATGTCTCAGTGGTTCAAAAATAGTCCACCAC-ATTAGGCAAAGTGGAGGAGGTGGTTGAGACATCAAAATCTGATCAACAGAAAAGC-GGGGATGGCTGAGAAACTTATAACGTCCAGCTGTACTTGGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAAATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTGGTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCATAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATAGTGTATAATGGGTTGTCTTTGTTTGGATCTCCATTCTGGATCATATCGTTTTTAGACAATATTGGATTCGAAGATAATGGAGACCCCTGTATACTGAGCATATCGGATGTAAGTGCTGTAACGTACTCCTCAATAATTTCATACGAAATGTAAGGTAAATAATTAGCTGACTGTAGTGCTGAGGAAGCACAAAGTTGGCAAACTCGGACCTTTAGCCACAAAGAAACAATTTCTAGTACTGGGGATAGTCCAAGGCAAATAGCTAACGATGATAATTTTATTAGGAAGTACAAACAGTCAGTGCTAATATCCTTATCAGCAGGAAAGACTTCGAAGAACAAGCGATACTTCATATCCTCTTCGTTTTTCAGCATTACGTACGTAGCTATGGTATCCAAAATTTCGACTTCCTCCAGTGGACTTGGTTTCTTCCCATCAACTGTAAGTACGCTGTTAGCAGAAAATTTCAAAGTTTCTGAATTAGTATGTTCGTCTCTAAGATATGACTCCAAGGTAACAAGAGACTTTTTGCATGTTTCAGAAGCTGACATTTTACGATCACAAATTTAATGTCTTCGGATTACTCGTTAAGGAATTTGTTAAACTTCTATATTTATTAAACANATAATAATAGTAGTAACTACTATAGGATATTTATAGCCTTTTGTCACTTAAATACCAAAGTAAACTCTAGCCCTTTATTGCTGTCTAGAGCAAATAAAATATACTTTATTTTTCTCAGTGTATTGAAGCCATCAGTAATGTGGCACTTGTAGTCTGAGGATGCTCTTACTCCAATGTTGAACGATGGCACAAGGAAACAAGGGTGCGATTCATAGGTATTTGTTCAGCAAATTAA] [+] EMBL CD127528 [ATGTGCAATAGTAGGTTCTGACAAACACTGCAAAAGTTCATAATGCAGATCCGAATACAGTTGGATATCAACTTGACACTTTCATCTTGTTTCGATTTGTAAGAGTAACCAATTATATGTCTCAGTGGTTCAAAAATAGTCCACCAC ATTAGGCAAAGTGGAGGAGGTGGTTGAGACATCAAAATCTGATCAACAGAAAAGC GGGGATGGCTGAGAAACTTATAACGTCCAGCTGTACTTGGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAAATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTGGTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCATAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATAGTGTATAATG ] [-] EMBL CD180497 [ CTCAGTGGTTCAAAAATAGTCCACCACAATTAGGCAAATTGGAGGAGTTGTTTGAGACATCAATATCTGATCAACAGAAAAGCGGGGGATGGCTGAGAAACTTATAACGTCTAGCTGTACTTGGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAAATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTGGTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCATAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATAGTGTATAATGGGTTGTCTTTGTTTGGATCTCCATTCTGGATCATATCGTTTTTAGACAATATTGGAT ] [+] EMBL CD116637 [ CGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCATAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATAGTGTATAATGGGTTGTCTTTGTTTGGATCTCCATTCTGGATCATATCGTTTTTAGACAATATTGGATTCGAAGATAATGGAGACCCCTGTATACTGAGCATATCGGATGTAAGTGCTGTAACGTACTCCTCAATAATTTCATACGAAATGTAAGGTAAATAATTAGCTGACTGTAGTGCTGAGGAAGCACAAAGTTGGCAAACTCGGACCTTTAGCCACAAAGAAACAATTTCTAGTACTGGGGATAGTCCAAGGCAAATAGCTAACGATGATAATTTTATTAGGAAGTACAAACAGTCAGTGCTAATATCCTTATCAGCAGGAAAGACTTCGAAGAACAAGCGATACTTCATATCCTCTTCGTTTTTCAGCATTACGTA ] [-] EMBL CD186154 [ TATAATGGG TGTCTTTG TTGGATCTCCATTGTGGATCATATCGTTTTTAGACAATATTGGATTCGAAGATAATGGAGACCCCTGTATACTGAGCATATCGGATGTAAGTGCTGTAACGTACTCCTCAATAATTTCATACGAAATGTAAGGTAAATAATTAGCTGACTGTAGTGCTGAGGAAGCACAAAGTTGGCAAACTCGGACCTTTAGCCACAAAGAAACAATTTCTAGTACTGGGGATAGTCCAAGGCAAATAGCTAACGATGATAATTTTATTAGGAAGTACAAACAGTCAGTGCTAATATCCTTATCAGCAGGAAAGACTTCGAAGAACAAGCGATACTTCATATCCTCTTCGTTTTTCAGCATTACGTACGTAGCTATGGTATCCAAAATTTCGACTTCCTCCAGTGGACTTGGTTTCTTCCCATCAACTGTAAGTACGCTGTTAGCAGAAAATTTCAAAGTTTCTGAATTAGTATGTTCGTCTCTAAGATATGACTCCAAGGTAACAAGAGACTTTTTGCATGTTTCAGAAGCTGACATTTTACGATCACAAATTT ] [+] EMBL CD179357 [ GGATCTCCATTCTGGATCATATCGTTTTTAGACAATATTGGATTCGAAGATAATGGAGACCCCTGTATACTGAGCATATCGGATGTAAGTGCTGTAACGTACTCCTCAATAATTTCATACGAAATGTAAGGTAAATAATTAGCTGACTGTAGTGCTGAGGAAGCACAAAGTTGGCAAACTCGGACCTTTAGCCACAAAGAAACAATTTCTAGTACTGGGGATAGTCCAAGGCAAATAGCTAACGATGATAATTTTATTAGGAAGTACAAACAGTCAGTGCTAATATCCTTATCAGCAGGAAAGACTTCGAAGAACAAGCGATACTTCATATCCTCTTCGTTTTTCAGCATTACGTACGTAGCTATGGTATCCAAAATTTCGACTTCCTCCAGTGGACTTGGTTTCTTCCCATCAACTGTAAGTACGCTGTTAGCAGAAAATTTCAAAGTTTCTGAATTAGTATGTTCGTCTCTAAGATATGACTCCAAGGTAACAAGAGACTTTTTGCATGTTTCAGAAGCTGACATTTTACGATCACAAATTTAATGTCTTCGGATTACTCGTTAAGGAATTTGTTAAACTTCTATATTTATTAAACANATAATAATAG ] [-] EMBL CD180638 [ TTCTTCCCATCAACTGTAAGTACGCTGTTAGCAGAAAATTTCAAAGTTTCTGAATTAGTATGTTCGTCTCTAAGATATGACTCCAAGGTAACAAGAGACTTTTTGCATGTTTCAGAAGCTGACATTTTACGATCACAAATTTAATGTCTTCGGATTACTCGTTAAGGAATTTGTTAAACTTCTATATTTATTCAACAAATAATAATAGTAGTAACTACTATAGGATATTTATAGCCTTTTGTCACTTAAATACCAAAGTAAACTCTAGCCCTTTATTGCTGTCTAGAGCAAATAAAATATACTTTATTTTTCTCAGTGTATTGAAGCCATCAGTAATGTGGCACTTGTAGTCTGAGGATGCTCTTACTCCAATGTTGAACGATGGCACAAGGAAACAAGGGTGCGATTCATAGGTATTTGTTCAGCAAATTAA] consensusID : consensus_8810#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [GGNNNANACATCAAAATCTGATCAACAAAAAAGCGGGGATGGCTGAGAAACTTATAACGTCCAGCTGTACTTGGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAAATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTGGTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCATAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATAGTGTATAATGGGTTGTCTTTACCTACCTAT] [+] EMBL CD127069 [GGNNNANACATCAAAATCTGATCAACAAAAAAGCGGGGATGGCTGAGAAACTTATAACGTCCAGCTGTACTTGGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAAATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTGGTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCATAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATAGTGTATAATGGGTTGTCTTTACCTACCTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8810#0 ATGTGCAATAGTAGGTTCTGACAAACACTGCAAAAGTTCATAATGCAGATCCGAATACAG 60 consensus_8810#1 ------------------------------------------------------------ consensus_8810#0 TTGGATATCAACTTGACACTTTCATCTTGTTTCGATTTGTAAGAGTAACCAATTATATGT 120 consensus_8810#1 ------------------------------------------------------------ consensus_8810#0 CTCAGTGGTTCAAAAATAGTCCACCACATTAGGCAAAGTGGAGGAGGTGGTTGAGACATC 180 consensus_8810#1 ------------------------------------------------GGNNNANACATC 12 ** * ***** consensus_8810#0 AAAATCTGATCAACAGAAAAGCGGGGATGGCTGAGAAACTTATAACGTCCAGCTGTACTT 240 consensus_8810#1 AAAATCTGATCAACAAAAAAGCGGGGATGGCTGAGAAACTTATAACGTCCAGCTGTACTT 72 *************** ******************************************** consensus_8810#0 GGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAA 300 consensus_8810#1 GGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAA 132 ************************************************************ consensus_8810#0 ATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTG 360 consensus_8810#1 ATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTG 192 ************************************************************ consensus_8810#0 GTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCA 420 consensus_8810#1 GTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCA 252 ************************************************************ consensus_8810#0 TAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATA 480 consensus_8810#1 TAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATA 312 ************************************************************ consensus_8810#0 GTGTATAATGGGTTGTCTTTGTTTGGATCTCCATTCTGGATCATATCGTTTTTAGACAAT 540 consensus_8810#1 GTGTATAATGGGTTGTCTTTACCTACCTAT------------------------------ 342 ******************** * * * consensus_8810#0 ATTGGATTCGAAGATAATGGAGACCCCTGTATACTGAGCATATCGGATGTAAGTGCTGTA 600 consensus_8810#1 ------------------------------------------------------------ consensus_8810#0 ACGTACTCCTCAATAATTTCATACGAAATGTAAGGTAAATAATTAGCTGACTGTAGTGCT 660 consensus_8810#1 ------------------------------------------------------------ consensus_8810#0 GAGGAAGCACAAAGTTGGCAAACTCGGACCTTTAGCCACAAAGAAACAATTTCTAGTACT 720 consensus_8810#1 ------------------------------------------------------------ consensus_8810#0 GGGGATAGTCCAAGGCAAATAGCTAACGATGATAATTTTATTAGGAAGTACAAACAGTCA 780 consensus_8810#1 ------------------------------------------------------------ consensus_8810#0 GTGCTAATATCCTTATCAGCAGGAAAGACTTCGAAGAACAAGCGATACTTCATATCCTCT 840 consensus_8810#1 ------------------------------------------------------------ consensus_8810#0 TCGTTTTTCAGCATTACGTACGTAGCTATGGTATCCAAAATTTCGACTTCCTCCAGTGGA 900 consensus_8810#1 ------------------------------------------------------------ consensus_8810#0 CTTGGTTTCTTCCCATCAACTGTAAGTACGCTGTTAGCAGAAAATTTCAAAGTTTCTGAA 960 consensus_8810#1 ------------------------------------------------------------ consensus_8810#0 TTAGTATGTTCGTCTCTAAGATATGACTCCAAGGTAACAAGAGACTTTTTGCATGTTTCA 1020 consensus_8810#1 ------------------------------------------------------------ consensus_8810#0 GAAGCTGACATTTTACGATCACAAATTTAATGTCTTCGGATTACTCGTTAAGGAATTTGT 1080 consensus_8810#1 ------------------------------------------------------------ consensus_8810#0 TAAACTTCTATATTTATTAAACANATAATAATAGTAGTAACTACTATAGGATATTTATAG 1140 consensus_8810#1 ------------------------------------------------------------ consensus_8810#0 CCTTTTGTCACTTAAATACCAAAGTAAACTCTAGCCCTTTATTGCTGTCTAGAGCAAATA 1200 consensus_8810#1 ------------------------------------------------------------ consensus_8810#0 AAATATACTTTATTTTTCTCAGTGTATTGAAGCCATCAGTAATGTGGCACTTGTAGTCTG 1260 consensus_8810#1 ------------------------------------------------------------ consensus_8810#0 AGGATGCTCTTACTCCAATGTTGAACGATGGCACAAGGAAACAAGGGTGCGATTCATAGG 1320 consensus_8810#1 ------------------------------------------------------------ consensus_8810#0 TATTTGTTCAGCAAATTAA 1339 consensus_8810#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||