cluster # 8810

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Schistosoma mansoni
cluster # 8810 cluster # 8810 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8810#0 length = 1339 sequences # 6

consensus_8810#1 length = 342 sequences # 1

consensusID : consensus_8810#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1339
fasta sequence

                              [ATGTGCAATAGTAGGTTCTGACAAACACTGCAAAAGTTCATAATGCAGATCCGAATACAGTTGGATATCAACTTGACACTTTCATCTTGTTTCGATTTGTAAGAGTAACCAATTATATGTCTCAGTGGTTCAAAAATAGTCCACCAC-ATTAGGCAAAGTGGAGGAGGTGGTTGAGACATCAAAATCTGATCAACAGAAAAGC-GGGGATGGCTGAGAAACTTATAACGTCCAGCTGTACTTGGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAAATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTGGTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCATAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATAGTGTATAATGGGTTGTCTTTGTTTGGATCTCCATTCTGGATCATATCGTTTTTAGACAATATTGGATTCGAAGATAATGGAGACCCCTGTATACTGAGCATATCGGATGTAAGTGCTGTAACGTACTCCTCAATAATTTCATACGAAATGTAAGGTAAATAATTAGCTGACTGTAGTGCTGAGGAAGCACAAAGTTGGCAAACTCGGACCTTTAGCCACAAAGAAACAATTTCTAGTACTGGGGATAGTCCAAGGCAAATAGCTAACGATGATAATTTTATTAGGAAGTACAAACAGTCAGTGCTAATATCCTTATCAGCAGGAAAGACTTCGAAGAACAAGCGATACTTCATATCCTCTTCGTTTTTCAGCATTACGTACGTAGCTATGGTATCCAAAATTTCGACTTCCTCCAGTGGACTTGGTTTCTTCCCATCAACTGTAAGTACGCTGTTAGCAGAAAATTTCAAAGTTTCTGAATTAGTATGTTCGTCTCTAAGATATGACTCCAAGGTAACAAGAGACTTTTTGCATGTTTCAGAAGCTGACATTTTACGATCACAAATTTAATGTCTTCGGATTACTCGTTAAGGAATTTGTTAAACTTCTATATTTATTAAACANATAATAATAGTAGTAACTACTATAGGATATTTATAGCCTTTTGTCACTTAAATACCAAAGTAAACTCTAGCCCTTTATTGCTGTCTAGAGCAAATAAAATATACTTTATTTTTCTCAGTGTATTGAAGCCATCAGTAATGTGGCACTTGTAGTCTGAGGATGCTCTTACTCCAATGTTGAACGATGGCACAAGGAAACAAGGGTGCGATTCATAGGTATTTGTTCAGCAAATTAA]

[+] EMBL CD127528             [ATGTGCAATAGTAGGTTCTGACAAACACTGCAAAAGTTCATAATGCAGATCCGAATACAGTTGGATATCAACTTGACACTTTCATCTTGTTTCGATTTGTAAGAGTAACCAATTATATGTCTCAGTGGTTCAAAAATAGTCCACCAC ATTAGGCAAAGTGGAGGAGGTGGTTGAGACATCAAAATCTGATCAACAGAAAAGC GGGGATGGCTGAGAAACTTATAACGTCCAGCTGTACTTGGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAAATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTGGTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCATAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATAGTGTATAATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD180497             [                                                                                                                        CTCAGTGGTTCAAAAATAGTCCACCACAATTAGGCAAATTGGAGGAGTTGTTTGAGACATCAATATCTGATCAACAGAAAAGCGGGGGATGGCTGAGAAACTTATAACGTCTAGCTGTACTTGGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAAATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTGGTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCATAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATAGTGTATAATGGGTTGTCTTTGTTTGGATCTCCATTCTGGATCATATCGTTTTTAGACAATATTGGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD116637             [                                                                                                                                                                                                                                                                                                                                                                                     CGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCATAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATAGTGTATAATGGGTTGTCTTTGTTTGGATCTCCATTCTGGATCATATCGTTTTTAGACAATATTGGATTCGAAGATAATGGAGACCCCTGTATACTGAGCATATCGGATGTAAGTGCTGTAACGTACTCCTCAATAATTTCATACGAAATGTAAGGTAAATAATTAGCTGACTGTAGTGCTGAGGAAGCACAAAGTTGGCAAACTCGGACCTTTAGCCACAAAGAAACAATTTCTAGTACTGGGGATAGTCCAAGGCAAATAGCTAACGATGATAATTTTATTAGGAAGTACAAACAGTCAGTGCTAATATCCTTATCAGCAGGAAAGACTTCGAAGAACAAGCGATACTTCATATCCTCTTCGTTTTTCAGCATTACGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD186154             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TATAATGGG TGTCTTTG TTGGATCTCCATTGTGGATCATATCGTTTTTAGACAATATTGGATTCGAAGATAATGGAGACCCCTGTATACTGAGCATATCGGATGTAAGTGCTGTAACGTACTCCTCAATAATTTCATACGAAATGTAAGGTAAATAATTAGCTGACTGTAGTGCTGAGGAAGCACAAAGTTGGCAAACTCGGACCTTTAGCCACAAAGAAACAATTTCTAGTACTGGGGATAGTCCAAGGCAAATAGCTAACGATGATAATTTTATTAGGAAGTACAAACAGTCAGTGCTAATATCCTTATCAGCAGGAAAGACTTCGAAGAACAAGCGATACTTCATATCCTCTTCGTTTTTCAGCATTACGTACGTAGCTATGGTATCCAAAATTTCGACTTCCTCCAGTGGACTTGGTTTCTTCCCATCAACTGTAAGTACGCTGTTAGCAGAAAATTTCAAAGTTTCTGAATTAGTATGTTCGTCTCTAAGATATGACTCCAAGGTAACAAGAGACTTTTTGCATGTTTCAGAAGCTGACATTTTACGATCACAAATTT                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD179357             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGATCTCCATTCTGGATCATATCGTTTTTAGACAATATTGGATTCGAAGATAATGGAGACCCCTGTATACTGAGCATATCGGATGTAAGTGCTGTAACGTACTCCTCAATAATTTCATACGAAATGTAAGGTAAATAATTAGCTGACTGTAGTGCTGAGGAAGCACAAAGTTGGCAAACTCGGACCTTTAGCCACAAAGAAACAATTTCTAGTACTGGGGATAGTCCAAGGCAAATAGCTAACGATGATAATTTTATTAGGAAGTACAAACAGTCAGTGCTAATATCCTTATCAGCAGGAAAGACTTCGAAGAACAAGCGATACTTCATATCCTCTTCGTTTTTCAGCATTACGTACGTAGCTATGGTATCCAAAATTTCGACTTCCTCCAGTGGACTTGGTTTCTTCCCATCAACTGTAAGTACGCTGTTAGCAGAAAATTTCAAAGTTTCTGAATTAGTATGTTCGTCTCTAAGATATGACTCCAAGGTAACAAGAGACTTTTTGCATGTTTCAGAAGCTGACATTTTACGATCACAAATTTAATGTCTTCGGATTACTCGTTAAGGAATTTGTTAAACTTCTATATTTATTAAACANATAATAATAG                                                                                                                                                                                                                                 ]
[-] EMBL CD180638             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTCTTCCCATCAACTGTAAGTACGCTGTTAGCAGAAAATTTCAAAGTTTCTGAATTAGTATGTTCGTCTCTAAGATATGACTCCAAGGTAACAAGAGACTTTTTGCATGTTTCAGAAGCTGACATTTTACGATCACAAATTTAATGTCTTCGGATTACTCGTTAAGGAATTTGTTAAACTTCTATATTTATTCAACAAATAATAATAGTAGTAACTACTATAGGATATTTATAGCCTTTTGTCACTTAAATACCAAAGTAAACTCTAGCCCTTTATTGCTGTCTAGAGCAAATAAAATATACTTTATTTTTCTCAGTGTATTGAAGCCATCAGTAATGTGGCACTTGTAGTCTGAGGATGCTCTTACTCCAATGTTGAACGATGGCACAAGGAAACAAGGGTGCGATTCATAGGTATTTGTTCAGCAAATTAA]




>consensus_8810#0
ATGTGCAATAGTAGGTTCTGACAAACACTGCAAAAGTTCATAATGCAGATCCGAATACAG
TTGGATATCAACTTGACACTTTCATCTTGTTTCGATTTGTAAGAGTAACCAATTATATGT
CTCAGTGGTTCAAAAATAGTCCACCACATTAGGCAAAGTGGAGGAGGTGGTTGAGACATC
AAAATCTGATCAACAGAAAAGCGGGGATGGCTGAGAAACTTATAACGTCCAGCTGTACTT
GGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAA
ATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTG
GTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCA
TAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATA
GTGTATAATGGGTTGTCTTTGTTTGGATCTCCATTCTGGATCATATCGTTTTTAGACAAT
ATTGGATTCGAAGATAATGGAGACCCCTGTATACTGAGCATATCGGATGTAAGTGCTGTA
ACGTACTCCTCAATAATTTCATACGAAATGTAAGGTAAATAATTAGCTGACTGTAGTGCT
GAGGAAGCACAAAGTTGGCAAACTCGGACCTTTAGCCACAAAGAAACAATTTCTAGTACT
GGGGATAGTCCAAGGCAAATAGCTAACGATGATAATTTTATTAGGAAGTACAAACAGTCA
GTGCTAATATCCTTATCAGCAGGAAAGACTTCGAAGAACAAGCGATACTTCATATCCTCT
TCGTTTTTCAGCATTACGTACGTAGCTATGGTATCCAAAATTTCGACTTCCTCCAGTGGA
CTTGGTTTCTTCCCATCAACTGTAAGTACGCTGTTAGCAGAAAATTTCAAAGTTTCTGAA
TTAGTATGTTCGTCTCTAAGATATGACTCCAAGGTAACAAGAGACTTTTTGCATGTTTCA
GAAGCTGACATTTTACGATCACAAATTTAATGTCTTCGGATTACTCGTTAAGGAATTTGT
TAAACTTCTATATTTATTAAACANATAATAATAGTAGTAACTACTATAGGATATTTATAG
CCTTTTGTCACTTAAATACCAAAGTAAACTCTAGCCCTTTATTGCTGTCTAGAGCAAATA
AAATATACTTTATTTTTCTCAGTGTATTGAAGCCATCAGTAATGTGGCACTTGTAGTCTG
AGGATGCTCTTACTCCAATGTTGAACGATGGCACAAGGAAACAAGGGTGCGATTCATAGG
TATTTGTTCAGCAAATTAA

consensusID : consensus_8810#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [GGNNNANACATCAAAATCTGATCAACAAAAAAGCGGGGATGGCTGAGAAACTTATAACGTCCAGCTGTACTTGGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAAATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTGGTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCATAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATAGTGTATAATGGGTTGTCTTTACCTACCTAT]

[+] EMBL CD127069             [GGNNNANACATCAAAATCTGATCAACAAAAAAGCGGGGATGGCTGAGAAACTTATAACGTCCAGCTGTACTTGGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAAATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTGGTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCATAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATAGTGTATAATGGGTTGTCTTTACCTACCTAT]




>consensus_8810#1
GGNNNANACATCAAAATCTGATCAACAAAAAAGCGGGGATGGCTGAGAAACTTATAACGT
CCAGCTGTACTTGGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGA
TGGTGCTTTGAAATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGC
GGAGGAATTTTGGTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAA
GGATGGAACCCATAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGAC
ACTGATGGGATAGTGTATAATGGGTTGTCTTTACCTACCTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8810#0      ATGTGCAATAGTAGGTTCTGACAAACACTGCAAAAGTTCATAATGCAGATCCGAATACAG 60
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      TTGGATATCAACTTGACACTTTCATCTTGTTTCGATTTGTAAGAGTAACCAATTATATGT 120
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      CTCAGTGGTTCAAAAATAGTCCACCACATTAGGCAAAGTGGAGGAGGTGGTTGAGACATC 180
consensus_8810#1      ------------------------------------------------GGNNNANACATC 12
                                                                      **   * *****

consensus_8810#0      AAAATCTGATCAACAGAAAAGCGGGGATGGCTGAGAAACTTATAACGTCCAGCTGTACTT 240
consensus_8810#1      AAAATCTGATCAACAAAAAAGCGGGGATGGCTGAGAAACTTATAACGTCCAGCTGTACTT 72
                      *************** ********************************************

consensus_8810#0      GGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAA 300
consensus_8810#1      GGCCAATCAATACTGGTCCAGCTGCTGAGAGAATTAGTTCCAGGTTGATGGTGCTTTGAA 132
                      ************************************************************

consensus_8810#0      ATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTG 360
consensus_8810#1      ATCCTCGAAAGTCTTAACCAGTGGGAGATACATAAAATAATCTGCGGCGGAGGAATTTTG 192
                      ************************************************************

consensus_8810#0      GTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCA 420
consensus_8810#1      GTTGCTTCGTGCGTTACAGGAAAATTGCAAACGGATGATTTTAGGGAAGGATGGAACCCA 252
                      ************************************************************

consensus_8810#0      TAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATA 480
consensus_8810#1      TAAACCAAAGTAACTCCAGACAAAAATGCGTCTGCGAATGCAGGTGACACTGATGGGATA 312
                      ************************************************************

consensus_8810#0      GTGTATAATGGGTTGTCTTTGTTTGGATCTCCATTCTGGATCATATCGTTTTTAGACAAT 540
consensus_8810#1      GTGTATAATGGGTTGTCTTTACCTACCTAT------------------------------ 342
                      ********************   *   * *                              

consensus_8810#0      ATTGGATTCGAAGATAATGGAGACCCCTGTATACTGAGCATATCGGATGTAAGTGCTGTA 600
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      ACGTACTCCTCAATAATTTCATACGAAATGTAAGGTAAATAATTAGCTGACTGTAGTGCT 660
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      GAGGAAGCACAAAGTTGGCAAACTCGGACCTTTAGCCACAAAGAAACAATTTCTAGTACT 720
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      GGGGATAGTCCAAGGCAAATAGCTAACGATGATAATTTTATTAGGAAGTACAAACAGTCA 780
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      GTGCTAATATCCTTATCAGCAGGAAAGACTTCGAAGAACAAGCGATACTTCATATCCTCT 840
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      TCGTTTTTCAGCATTACGTACGTAGCTATGGTATCCAAAATTTCGACTTCCTCCAGTGGA 900
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      CTTGGTTTCTTCCCATCAACTGTAAGTACGCTGTTAGCAGAAAATTTCAAAGTTTCTGAA 960
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      TTAGTATGTTCGTCTCTAAGATATGACTCCAAGGTAACAAGAGACTTTTTGCATGTTTCA 1020
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      GAAGCTGACATTTTACGATCACAAATTTAATGTCTTCGGATTACTCGTTAAGGAATTTGT 1080
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      TAAACTTCTATATTTATTAAACANATAATAATAGTAGTAACTACTATAGGATATTTATAG 1140
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      CCTTTTGTCACTTAAATACCAAAGTAAACTCTAGCCCTTTATTGCTGTCTAGAGCAAATA 1200
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      AAATATACTTTATTTTTCTCAGTGTATTGAAGCCATCAGTAATGTGGCACTTGTAGTCTG 1260
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      AGGATGCTCTTACTCCAATGTTGAACGATGGCACAAGGAAACAAGGGTGCGATTCATAGG 1320
consensus_8810#1      ------------------------------------------------------------
                                                                                  

consensus_8810#0      TATTTGTTCAGCAAATTAA 1339
consensus_8810#1      -------------------