These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8812#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 772 fasta sequence [ATCCGGGTCTACCTCTTTATGTGTGTCCGTGGTGTCGATCGGAGTCCAGCACAGTCTGCGTTGGTTTTAATGCTTCAAGTCTCGCATGGCGACATCTGCTCAGTGAGCATTCAAGTGAGATTATGAAGCCAGAAACACTGAGTCGAATCGGTCGAGTATCTGAAAAATCGCTTTCGGAGCGTGATGTCACTCGTCTTTTGGGTATATATTGTCCAGAAATCGATTCAACCCAACCACCAGAGAACATTGCTGTTAGGCAACCATCTGTTACCAGCCGCCGTAAAAACCAAAAGATAGAAACTCTCGGTAGACCACATCTTTCTGGAGAAAATGAATTAGCGATTATAGAAGCCAAAGAGTCGAATTCAGCGGAAAATATAAACCCCGTTGAGGAGGATAAGATTGGATCTTCCCCAATCCCTTTAAATAATCAGAAAAATGACGCTAATGATGATCTATTATTTTACAATCTCATCCAAATTGGTTCAGGGGCGATTTGGTCACGTAATACGACACAGTATATTGTAAATAATTTATAATATGGAATTTAAATGATTTCATAGTTTTTTTTTATTTTTCTCACTGGACCAGACTTATATGTAATATCAATCGTGCTCGATACATTCTGTGTAGTTTATACTAACTCTGTAATCCTACTTTACGACGTACGCAACAAGTCACAACTCATAAAAAAATTGGTTATATATGAACATTTGGATATCATCTAAACTGAAATATACTANGTTTTTACCAAGTAATTCATAAGCTGAAT] [-] EMBL BG932440 [ATCCGGGTCTACCTCTTTATGTGTGTCCGTGGTGTCGATCGGAGTCCAGCACAGTCTGCGTTGGTTTTAATGCTTCAAGTCTCGCATGGCGACATCTGCTCAGTGAGCATTCAAGTGAGATTATGAAGCCAGAAACACTGAGTCGAATCGGTCGAGTATCTGAAAAATCGCTTTCGGAGCGTGATGTCACTCGTCTTTTGGGTATATATTGTCCAGAAATCGATTCAACCCAACCACCAGAGAACATTGCTGTTAGGCAACCATCTGTTACCtc ] [-] EMBL AI067548 [ CAGAAACACTGAGTCGAATCGGTCGAGTATCTGAAAAATCGCTTTCGGAGCGTGATGTCACTCGTCTTTTGGGTATATATTGTCCAGAAATCGATTCAACCCAACCACCAGAGAACATTGCTGTTAGGCAACCATCTGTTACCAGCCGCCGTAAAAACCAAAAGATAGAAACTCTCGGTAGACCACATCTTTCTGGAGAAAATGAATTAGCGATTATAGAAGCCAAAGAGTCGAATTCAGCGGAAAATATAAACCCCGTTGAGGAGGATAAGATTGGATCTTCCCCAATCCCTTTAAATAATCAGAAAAATGACGCTAATGATGATCTATTATTTTACAATCTCATCCAAATTGGTTCAGGGGCGATTTGGTCACGTAATACGACACA ] [+] EMBL CD160517 [ ggaagacgaTCGTCTTTTGGGTATATATTGTCCAGAAATCGATTCAACCCAACCACCAGAGAACATTGCTGTTAGGCAACCATCTGTTACCAGCCGCCGTAAAAACCAAAAGATAGAAACTCTCGGTAGACCACATCTTTCTGGAGAAAATGAATTAGCGATTATAGAAGCCAAAGAGTCGAATCCAGCGGAAAATATAAACCCCGTTGAGGAGGATAAGATTGGATCTTCCCCAATCCCTTTAAATAATCAGAAAAATGACGCTAATGATGATCTATTATTTTACAATCTCATCCAAATTGGTTCAGGGGCGATTTGGTCACGTAATACGACACAGTATATTGTAAATAATTTATAATATGGAATTTAAATGATTTCATAGTTTTTTTTTATTTTTCTCACTGGACCAGACTTATATGTAATATCAATCGTGCTCGATACATTCTGTGTAGTTTATACTAACTCTGTAATCCTACTTTACGACGTACGCAACAAGTCACAACTCATAAAAAAATTGGTTATATATGAACATTTGGATATCATCTAAACTGAAATATACTANGTTTTTACCAAGTAATTCATAAGCTGAAT] consensusID : consensus_8812#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 445 fasta sequence [AGAAACACTGAGTCGAATCGGTCGAGTATCTGAAAATCGCTTTCGGAGCGTGA-TGCCACTCGTCTTTTGGGTATATATTGTCCAGAAATCGATTCAACCCAACCACCAGAGAACATTGCTGTTAGGCAACCATCTGTTACCAGCCGCCGTAAAAACCAAAAGATAGAAACTCTCGGTAGACCACATCTTTCTGGAGAAAATGAATTAGCGATTATAGAAGCCAAAGAGTCGAATTCAGCGGAAAATATAAACCCCGTTGAGGAGGATAAGATTGGATCTTCCCCAATCCCTTTAAATAATCAGAAAAATGACGCTAATGATGATCTATTATTTTACAATCTCATCCAAATTGGTTCAGGGGCGATTTGGTCACGTAATACGACACAGTATATTGTAAATAATTTATAATATGGAATTTAAATGATTTCAAAAAATAAAAAAAAAA] [-] EMBL AI394868 [AGAAACACTGAGTCGAATCGGTCGAGTATCTGAAAATCGCTTTCGGAGCGTGA TGCCACTCGTCTTTTGGGTATATATTGTCCAGAAATCGATTCAACCCAACCACCAGAGAACATTGCTGTTAGGCAACCATCTGTTACCAGCCGCCGTAAAAACCAAAAGATAGAAACTCTCGGTAGACCACATCTTTCTGGAGAAAATGAATTAGCGATTATAGAAGCCAAAGAGTCGAATTCAGCGGAAAATATAAACCCCGTTGAGGAGGATAAGATTGGATCTTCCCCAATCCCTTTAAATAATCAGAAAAATGACGCTAATGATGATCTATTATTTTACAATCTCATCCAAATTGGTTCAGGGGCGATTTGGTCACGTAATACGACACAGTATATTGTAAATAATTTATAATATGGAATTTAAATGATTTCAAAAAATAAAAAAAAA ] [-] EMBL AI395621 [ TCGAATCGTCCGAGTATTTGAAAATCGCTTTCGGAGCGTGATTGTCACTCGTCTTTTGGGTATATATTGTCCAGAAATCGATTCAACCCACCCACCAGAGAAC TTGCTGTTAGGCAACCATCTGTTACCAGCCGCCGTAAAAACCAAAAGATAGAAACTCTCGGTAGACCACATCTTTCTGGAGAAAATGAATTAGCGATTATAGAAGCCAAAGAGTCGAATTCAGCGGAAAATATAAACCCCGTTGAGGAGGATAAGATTGGATCTTCCCCAATCCCTTTAAATAATCAGAAAAATGACGCTAATGATGATCTATTATTTTACAATCTCATCCAAATTGGTTCAGGGGCGATTTGGTCACGTAATACGACACAGTATATTGTAAATAATTTATAATATGGAATTTAAATGATTTCAAAAAAAAAAAAAAAAA] [-] EMBL AI977462 [ TCGTCTTTTGGGTATATATTGTCCAGAAATAGATTCAACCCAACCACCAGAGAACATTGCTGTTAGGCAACCATTTGTTACCAGCCGCCGTAAAAACCAAAAGATAGAAACTCTCGGTAGACCGCATCTTTCTGGAGAAAATGAATTAGCGATTATAAAAGCCAAAGAGTCGAATTCAGCGGAAAATATAAACCCCGTTTAGGAGGATAAGATTGGATCTTCCCCAATCCCTTTAAATAATCAGAAAAATGACGCTAATGATGATCTATTATTTGACAATCTCATCCAAATTGGTTCAGGGGCGATTTGGTCACGTAATACGACACAGTATATTGTAAATAATTTATAATATGGA ] [-] EMBL AI977692 [ AATTAGCGATTATAGAAGCCAAAGAGTGGAATTCAGCGGAAAATATAAACCCCGTTGAGGAGGATAAGATTGGATTTTCCCCAATCCCTTTAAATAATCAGAAAAATGACGCTAATGATGATCTATTATTTTACAATTTCATCCAAATTGGTTCAGGGGCGATTTGGTCACGTAATCCGACACAGGATATTGTAAATAATTTATAATAGGGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8812#0 ATCCGGGTCTACCTCTTTATGTGTGTCCGTGGTGTCGATCGGAGTCCAGCACAGTCTGCG 60 consensus_8812#1 ------------------------------------------------------------ consensus_8812#0 TTGGTTTTAATGCTTCAAGTCTCGCATGGCGACATCTGCTCAGTGAGCATTCAAGTGAGA 120 consensus_8812#1 ------------------------------------------------------------ consensus_8812#0 TTATGAAGCCAGAAACACTGAGTCGAATCGGTCGAGTATCTGAAAAATCGCTTTCGGAGC 180 consensus_8812#1 ----------AGAAACACTGAGTCGAATCGGTCGAGTATCTGAAAA-TCGCTTTCGGAGC 49 ************************************ ************* consensus_8812#0 GTGATGTCACTCGTCTTTTGGGTATATATTGTCCAGAAATCGATTCAACCCAACCACCAG 240 consensus_8812#1 GTGATGCCACTCGTCTTTTGGGTATATATTGTCCAGAAATCGATTCAACCCAACCACCAG 109 ****** ***************************************************** consensus_8812#0 AGAACATTGCTGTTAGGCAACCATCTGTTACCAGCCGCCGTAAAAACCAAAAGATAGAAA 300 consensus_8812#1 AGAACATTGCTGTTAGGCAACCATCTGTTACCAGCCGCCGTAAAAACCAAAAGATAGAAA 169 ************************************************************ consensus_8812#0 CTCTCGGTAGACCACATCTTTCTGGAGAAAATGAATTAGCGATTATAGAAGCCAAAGAGT 360 consensus_8812#1 CTCTCGGTAGACCACATCTTTCTGGAGAAAATGAATTAGCGATTATAGAAGCCAAAGAGT 229 ************************************************************ consensus_8812#0 CGAATTCAGCGGAAAATATAAACCCCGTTGAGGAGGATAAGATTGGATCTTCCCCAATCC 420 consensus_8812#1 CGAATTCAGCGGAAAATATAAACCCCGTTGAGGAGGATAAGATTGGATCTTCCCCAATCC 289 ************************************************************ consensus_8812#0 CTTTAAATAATCAGAAAAATGACGCTAATGATGATCTATTATTTTACAATCTCATCCAAA 480 consensus_8812#1 CTTTAAATAATCAGAAAAATGACGCTAATGATGATCTATTATTTTACAATCTCATCCAAA 349 ************************************************************ consensus_8812#0 TTGGTTCAGGGGCGATTTGGTCACGTAATACGACACAGTATATTGTAAATAATTTATAAT 540 consensus_8812#1 TTGGTTCAGGGGCGATTTGGTCACGTAATACGACACAGTATATTGTAAATAATTTATAAT 409 ************************************************************ consensus_8812#0 ATGGAATTTAAATGATTTCATAGTTTTTTTTTATTTTTCTCACTGGACCAGACTTATATG 600 consensus_8812#1 ATGGAATTTAAATGATTTCAAAAAATAAAAAAAAAA------------------------ 445 ******************** * * * consensus_8812#0 TAATATCAATCGTGCTCGATACATTCTGTGTAGTTTATACTAACTCTGTAATCCTACTTT 660 consensus_8812#1 ------------------------------------------------------------ consensus_8812#0 ACGACGTACGCAACAAGTCACAACTCATAAAAAAATTGGTTATATATGAACATTTGGATA 720 consensus_8812#1 ------------------------------------------------------------ consensus_8812#0 TCATCTAAACTGAAATATACTANGTTTTTACCAAGTAATTCATAAGCTGAAT 772 consensus_8812#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||