cluster # 8817

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Schistosoma mansoni
cluster # 8817 cluster # 8817 Sequences # 7 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8817#0 length = 677 sequences # 3
consensus_8817#1 length = 582 sequences # 2

consensus_8817#2 length = 272 sequences # 1
consensus_8817#3 length = 140 sequences # 1

consensusID : consensus_8817#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 677
fasta sequence

                              [GTTACTGCCAGCTTCATGTATTGGTTGGCCAGGTTCCGTTTGATGCTCTAGGAAATAATTGCAACAAAAATTTACATCTTTACTATGTCTAATGGGTAATACTATTGCTCCGAGGATCGAAAACGCCGAGAAAACTGGTGTGTTACAAGTCAGTAGCTTAAAATTAAAAAAAGGTTCCTGAACAAGTAAAGCACCTTCGTAATCTTCGGAGTTTAGATCTCTCAAATAATAAAATTGAAAACATCGACCCATGGATTTCTGTGTTAAAAAATCTTAAGGTTCTAAACGTTGAAAACAACAAATTGATATATGGAACGTTTTACAGCAATGAAGAAAAAAGCCGCTTAAAAAACATACGAAAACGAAGACAATTCTTATTGATGAAAGT-CAAACACAGCTAATACCGTTATCACACTCTCTCTGACTGACTGTTTCTGCTAACTTTTCACACATTTATGTATGAATGTGTGTGTATTTGGCGATTATTATTTCATAATCGATAACTATTGAGCAATAATCAACTTCTTATGACCCAAACATCCACACACCCGTTCACTTGTCTACTTTTGATTTTTTTTCTTTTTCGCTTCTTTCTGTAACTGTTACTTTTTTTCAGAAACGAAATATATACAGGTTGTTTATTTAGTGTAAAACAGTATACTACTGAGTAATATAAT]

[+] EMBL CD185898             [GTTACTGCCAGCTTCATGTATTGGTTGGCCAGGTTCCGTTTGATGCTCTAGGAAATAATTGCAACAAAAATTTACATCTTTACTATGTCTAATGGGTAATACTATTGCTCCGAGGATCGAAAACGCCGAGAAAACTGGTGTGTTACAAGTCAGTAGCTTAAAATTAAAAAAAGGTTCCTGAACAAGTAAAGCACCTTCGTAATCTTCGGAGTTTAGATCTCTCAAATAATAAAATTGAAAACATCGACCCATGGATTTCTGTGTTAAAAAATCTTAAGGTTCTAAACGTTGAAAACAACAAATTGATATATGGAACGTTTTACAGCAATGAAGAAAAAAGCCGCTTAAAAAACATACGAAAACGAAGACAATTCTTATTGATGAAAGT CAAACACAGCTAATACCGTTATCACACTCTCTCTGACTGACTGTTTCTGCTAACTTTTCACACATTTATGTATGAATGTGTGTGTATTTGGCGATTATTATTTCATAATCGATAACTATTGAGCAATAATCAACTTCTTATGACCCAAACATCCACACA                                                                                                                                  ]
[+] EMBL AI618819             [                                                                                                                                                                                                                                                                                                                                                                                         TTGATGAAAGTACAAACACAGCTAATACCGTTATCACACTCTCTCTGACTGACTGTTTCTGCTAACTTTTCACACATTTATGTATGAATGTGTGTGTATTTGGCGATTATTATTTCATAATCGATAACTATTGAGCAATAATCAACTTCTTATGACCCAAACATCCACACACCCGTTCACTTGTCTACTTTTGATTTTTTTTCTTTTTCGCTTCTTT                                                                                    ]
[-] EMBL CD075224             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TTTCATAATCGATAACTATTGAGCAATAATCAACTTCTTATGACCCAAACATCCACACACCCGTTCACTTGTCTACTTTTGATTTTTTTCTTTTTTCGCTTCTTTCTGTAACTGTTACTTTTTTTCAGAAACGAAATATATACAGGTTGTTTATTTAGTGTAAAACAGTATACTACTGAGTAATATAAT]




>consensus_8817#0
GTTACTGCCAGCTTCATGTATTGGTTGGCCAGGTTCCGTTTGATGCTCTAGGAAATAATT
GCAACAAAAATTTACATCTTTACTATGTCTAATGGGTAATACTATTGCTCCGAGGATCGA
AAACGCCGAGAAAACTGGTGTGTTACAAGTCAGTAGCTTAAAATTAAAAAAAGGTTCCTG
AACAAGTAAAGCACCTTCGTAATCTTCGGAGTTTAGATCTCTCAAATAATAAAATTGAAA
ACATCGACCCATGGATTTCTGTGTTAAAAAATCTTAAGGTTCTAAACGTTGAAAACAACA
AATTGATATATGGAACGTTTTACAGCAATGAAGAAAAAAGCCGCTTAAAAAACATACGAA
AACGAAGACAATTCTTATTGATGAAAGTCAAACACAGCTAATACCGTTATCACACTCTCT
CTGACTGACTGTTTCTGCTAACTTTTCACACATTTATGTATGAATGTGTGTGTATTTGGC
GATTATTATTTCATAATCGATAACTATTGAGCAATAATCAACTTCTTATGACCCAAACAT
CCACACACCCGTTCACTTGTCTACTTTTGATTTTTTTTCTTTTTCGCTTCTTTCTGTAAC
TGTTACTTTTTTTCAGAAACGAAATATATACAGGTTGTTTATTTAGTGTAAAACAGTATA
CTACTGAGTAATATAAT

consensusID : consensus_8817#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 582
fasta sequence

                              [TTGGTTGGCC-GGCTCTGTTTGATGCTCTACGCAATAATTGCAACAAAAATTTACATCTTTACTATGTCTAATGGGTATTACTATTGCTCCGAGGATCGAAAACGCCGAGAAAACTGGTGTGTTACAAGTCAGTAGCTTAAAATTAAAAAAGGTTCCTGAACAAGTAAAGCACTCTTCGTAATCTTCGGAGTTTACATCTCTCAAATAATAAAATTGAAAACATCGACCCATGGATTTCTGTGTTAAAAAATCTTAAGGTTCTAAACGTTGAAAACAACAAATTGAAATGTTTTCCAGCAGAATTATATCTCTTAACAAAATTAGAATCCTTAAATGGAAATAGTAATTTCTTAATGAATTTTATTACACCTGGAGCAATTGGCAATTTAAATGAATTATCTTGTTTACGTACTGGAAATTTAAGTCATAATTATTTAACTGAATTTCCTGTGGAATTATGCTTAAAGACCATACCTATCAATATGATTGACTTGTCAAATAATCAAATAAGTATTATACCAAATGCTATTGCTTCATTACAGGCCATTGAAATTATTTGAATTCAAATAAATATCAATTATA]

[+] EMBL CD081393             [TTGGTTGGCC GGCTCTGTTTGATGCTCTACGCAATAATTGCAACAAAAATTTACATCTTTACTATGTCTAATGGGTATTACTATTGCTCCGAGGATCGAAAACGCCGAGAAAACTGGTGTGTTACAAGTCAGTAGCTTAAAATTAAAAAAGGTTCCTGAACAAGTAAAGCACTCTTCGTAATCTTCGGAGTTTACATCTCTCAAATAATAAAATTGAAAACATCGACCCATGGATTTCTGTGTTAAAAAATCTTAAGGTTCTAAACGTTGAAAACAACAAATTGAAATGTTTTCCAGCAGAATTATATCTCTTAACAAAATTAGAATCCTTAAATGGAAATAGTAATTTCTTAATGAATTTTATTACACCTGGAGCAATTGGCAATTTAAATGAATTATCTTGTTTACGTACTGGAAATTTAAGTCATAATTATTTAACTGAATTTCCTGTGGAATTATGCTTAAAGACCATACCTATCAATATGATTGACTTGTCAAATAATCAAATAAGTATTATACCAAATGCTATTGCTTCATTACAGGCCATTGAAATTATTTGAATTCAAATAAATATCAATTATA]
[+] EMBL CD084382             [     gGGCCAGGTTCAGTTTGATGCTCTAGGAAATAATTGCAACAAAAATTTACATCTTTACTATGTCTAATGGGTAATACTATTGCTCCGAGGATCGAAAACGCCGAGAAAACTGGTGTGTTACAAGTCAGTAGCTTAAAATTAAAAAAGGTTCCTGAACAAGTAAAGCAC CTTCGTAATCTTCGGAGTTTAGATCTCTCAAATAATAAAATTGAAAACATCGACCCATGGATTTCTGTGTTAAAAAATCTTAAGGTTCTAAACGTTGAAAACAACAAATTGAAATGTTTTCCAGCAGAATTATATCTCTTAACAAAATTAGAATCCTTAAATGGAAATAGTAATTTCTTAATGAATTTTATTACACCTGGAGCAATTGTCAATTTAAATGAATTATCTTGTTTACGTACTGTAAATTTAAGTCATAATTATTTAACTGAATTTCCTGTGGAATTATGCTTAAAGACCATATCTATCAATATGATTGACTTG                                                                                        ]




>consensus_8817#1
TTGGTTGGCCGGCTCTGTTTGATGCTCTACGCAATAATTGCAACAAAAATTTACATCTTT
ACTATGTCTAATGGGTATTACTATTGCTCCGAGGATCGAAAACGCCGAGAAAACTGGTGT
GTTACAAGTCAGTAGCTTAAAATTAAAAAAGGTTCCTGAACAAGTAAAGCACTCTTCGTA
ATCTTCGGAGTTTACATCTCTCAAATAATAAAATTGAAAACATCGACCCATGGATTTCTG
TGTTAAAAAATCTTAAGGTTCTAAACGTTGAAAACAACAAATTGAAATGTTTTCCAGCAG
AATTATATCTCTTAACAAAATTAGAATCCTTAAATGGAAATAGTAATTTCTTAATGAATT
TTATTACACCTGGAGCAATTGGCAATTTAAATGAATTATCTTGTTTACGTACTGGAAATT
TAAGTCATAATTATTTAACTGAATTTCCTGTGGAATTATGCTTAAAGACCATACCTATCA
ATATGATTGACTTGTCAAATAATCAAATAAGTATTATACCAAATGCTATTGCTTCATTAC
AGGCCATTGAAATTATTTGAATTCAAATAAATATCAATTATA

consensusID : consensus_8817#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 272
fasta sequence

                              [TCATTCAATATGAAAGATTTTTATAATTTACCTGGTTACTCAAAATATATGGAACGTTTTACAGCAATGAAGAAAAAAGCCGCTTAAAAAAACATACGAAAACGAAGACAATTCTTATTGATGAAAGTCAAACACAGCTAATACCGTTATCACACTCTCTCTGACTGACTGTTTCTGCTAACTTTTCACACATTTATGTATGAATGTGTGTGTATTTGGCGATTATTATTTCATAATCGATAACTATTGAGCAATAATCAACTTCTTATGAG]

[-] EMBL BG930988             [TCATTCAATATGAAAGATTTTTATAATTTACCTGGTTACTCAAAATATATGGAACGTTTTACAGCAATGAAGAAAAAAGCCGCTTAAAAAAACATACGAAAACGAAGACAATTCTTATTGATGAAAGTCAAACACAGCTAATACCGTTATCACACTCTCTCTGACTGACTGTTTCTGCTAACTTTTCACACATTTATGTATGAATGTGTGTGTATTTGGCGATTATTATTTCATAATCGATAACTATTGAGCAATAATCAACTTCTTATGAG]




>consensus_8817#2
TCATTCAATATGAAAGATTTTTATAATTTACCTGGTTACTCAAAATATATGGAACGTTTT
ACAGCAATGAAGAAAAAAGCCGCTTAAAAAAACATACGAAAACGAAGACAATTCTTATTG
ATGAAAGTCAAACACAGCTAATACCGTTATCACACTCTCTCTGACTGACTGTTTCTGCTA
ACTTTTCACACATTTATGTATGAATGTGTGTGTATTTGGCGATTATTATTTCATAATCGA
TAACTATTGAGCAATAATCAACTTCTTATGAG

consensusID : consensus_8817#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 140
fasta sequence

                              [ACTATGTCTAATGGGTAATACTATTGCTCCGAGGATCGAAAACGNCGAGTAAAACTGGTGTNTAACAAGTCAGTAGCTTAAAATTAAGNNAGGTTCCNGAACAAGTAAAGCACCTTCGTNCNCTGCGGAGTTTNGTNCTC]

[+] EMBL SM6922               [ACTATGTCTAATGGGTAATACTATTGCTCCGAGGATCGAAAACGNCGAGTAAAACTGGTGTNTAACAAGTCAGTAGCTTAAAATTAAGNNAGGTTCCNGAACAAGTAAAGCACCTTCGTNCNCTGCGGAGTTTNGTNCTC]




>consensus_8817#3
ACTATGTCTAATGGGTAATACTATTGCTCCGAGGATCGAAAACGNCGAGTAAAACTGGTG
TNTAACAAGTCAGTAGCTTAAAATTAAGNNAGGTTCCNGAACAAGTAAAGCACCTTCGTN
CNCTGCGGAGTTTNGTNCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8817#1      --------------------TTGGTTGGCC-GGCTCTGTTTGATGCTCTACGCAATAATT 39
consensus_8817#3      ------------------------------------------------------------
consensus_8817#0      GTTACTGCCAGCTTCATGTATTGGTTGGCCAGGTTCCGTTTGATGCTCTAGGAAATAATT 60
consensus_8817#2      ----------------------------------------TCATTCAATATGAAAGATTT 20
                                                                                  

consensus_8817#1      GCAACAAAAATTTACATCTTTACTATGTCTA-ATGGGTATTACTATTGCTCCGAGGATCG 98
consensus_8817#3      ---------------------ACTATGTCTA-ATGGGTAATACTATTGCTCCGAGGATCG 38
consensus_8817#0      GCAACAAAAATTTACATCTTTACTATGTCTA-ATGGGTAATACTATTGCTCCGAGGATCG 119
consensus_8817#2      TTAT----AATTTACCTGGTTACTCAAAATATATGGAACGTTTTACAGCAATGAAGAAAA 76
                                           ***     ** ****    *  **  **   ** **   

consensus_8817#1      AAAACGCCGAG-AAAACTGGTGTGTTACAAGTCAGTAGCTTAAAATTAAAAAA-GGTTCC 156
consensus_8817#3      AAAACGNCGAGTAAAACTGGTGTNTAACAAGTCAGTAGCTTAAAATTAAGNNA-GGTTCC 97
consensus_8817#0      AAAACGCCGAG-AAAACTGGTGTGTTACAAGTCAGTAGCTTAAAATTAAAAAAAGGTTCC 178
consensus_8817#2      AAGCCGCTTAAAAAAACATACGAAAACGAAGACAATTCTT----ATTGATGAA--AGTCA 130
                      **  **   *  *****    *      *** ** *   *    *** *   *    ** 

consensus_8817#1      TGAACAAGTAAAGCACTCTTCGTAATCTTCGGAGTTTACATCTCTCAAATAATAAAATTG 216
consensus_8817#3      NGAACAAGTAAAGCAC-CTTCGTNCNCTGCGGAGTTTNGTNCTC---------------- 140
consensus_8817#0      TGAACAAGTAAAGCAC-CTTCGTAATCTTCGGAGTTTAGATCTCTCAAATAATAAAATTG 237
consensus_8817#2      AACACAGCTAATACCGTTATCACACTCTCTCTGACTGACTGTTTC----TGCTAACTTTT 186
                         ***  ***  *     **     **       *      *                 

consensus_8817#1      AAAACATCGACCCATGGATTTCTGTGTTAAAAAATCTTAAGGTTCTAAACGTTGAAAACA 276
consensus_8817#3      ------------------------------------------------------------
consensus_8817#0      AAAACATCGACCCATGGATTTCTGTGTTAAAAAATCTTAAGGTTCTAAACGTTGAAAACA 297
consensus_8817#2      CACACATTTATGTATGAATGTGTGTGTATTTGGCGATTATTATTTCATA-ATCGATAACT 245
                                                                                  

consensus_8817#1      ACAAATTGA-------AATGTTTTCCAGCAGAATTATATCTCTTAACAAAATTAGAATCC 329
consensus_8817#3      ------------------------------------------------------------
consensus_8817#0      ACAAATTGATATATGGAACGTTTTACAGCAATGAAGAAAAAAGCCGCTTAAAAAACATAC 357
consensus_8817#2      ATTGAGCAATA-----ATCAACTTCTTATGAG---------------------------- 272
                                                                                  

consensus_8817#1      TTAAATGGAAATAGTAATTTCTTAATGAATTTTATTACACCTGGAGCAATTGGCAA---- 385
consensus_8817#3      ------------------------------------------------------------
consensus_8817#0      GAAAACGAAGACAATTCTTATTGATGAAAGTCAAACACAGCTAATACCGTTATCACACTC 417
consensus_8817#2      ------------------------------------------------------------
                                                                                  

consensus_8817#1      --TTTAAATGAATTATCTTGTTTACGTACTGGAAATTTAAGTCATAAT---TATTTAACT 440
consensus_8817#3      ------------------------------------------------------------
consensus_8817#0      TCTCTGACTGACTGTTTCTGCTAACTTTTCACACATTTATGTATGAATGTGTGTGTATTT 477
consensus_8817#2      ------------------------------------------------------------
                                                                                  

consensus_8817#1      GA--------ATTTCCTGTGGAATTATGCTTAAAGACCATACCTATCAATATGATTGACT 492
consensus_8817#3      ------------------------------------------------------------
consensus_8817#0      GGCGATTATTATTTCATAATCGATAACTATTGAGCAATAATCAACTTCTTATGACCCAAA 537
consensus_8817#2      ------------------------------------------------------------
                                                                                  

consensus_8817#1      TGTCAAATAATCAAATAAGTATTATACCA--AATGCTATTGCTTCATTACAGGCCATTGA 550
consensus_8817#3      ------------------------------------------------------------
consensus_8817#0      CATCCACACACCCGTTCACTTGTCTACTTTTGATTTTTTTTCTTTTTCGCTTCTTTCTGT 597
consensus_8817#2      ------------------------------------------------------------
                                                                                  

consensus_8817#1      AATTATTTGAATTCAAATAAATATCAATTATA---------------------------- 582
consensus_8817#3      ------------------------------------------------------------
consensus_8817#0      AACTGTT-ACTTTTTTTCAGAAACGAAATATATACAGGTTGTTTATTTAGTGTAAAACAG 656
consensus_8817#2      ------------------------------------------------------------
                                                                                  

consensus_8817#1      ---------------------
consensus_8817#3      ---------------------
consensus_8817#0      TATACTACTGAGTAATATAAT 677
consensus_8817#2      ---------------------