These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8818#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence [AGATTTAACATGTGTATGTCACTGGATAAGGTGAAATATCAGATTATTTGATTTGAGTTCAGTTATGATTTGAGTGATTTCTTCATTTTACCTCGTAAGATCATATAGCTGACTGAAAAATAATTGTGCGATTTCTGAATGTATTCTTTTTCACTTTATAGTTACTTTTCAAAGAACACGTTTTATTTTTAATTTCTTCTTCACAATTTATGTTTATACGCGGAATTTAAACTGATAAGTTTTGTTTGTACAAATAAACGAAAAGGATAGACGTCAGTCTGAGATAATGGTGACCGTCTGTTGCAGCTGTGCTCAGATAACCGCCTATTTTTTGCAAAT] [+] EMBL CD177895 [AGATTTAACATGTGTATGTCACTGGATAAGGTGAAATATCAGATTATTTGATTTGAGTTCAGTTATGATTTGAGTGATTTCTTCATTTTACCTCGTAAGATCATATAGCTGACTGAAAAATAATTGTGCGATTTCTGAATGTATTCTTTTTCACTTTATAGTTACTTTTCAAAGAACACGTTTTATTTTTAATTTCTTCTTCACAATTTATGTTTATACGCGGAATTTAAACTGATAAGTTTTGTTTGTACAAATAAACGAAAAGGATAGACGTCAGTCTGAGATAATGGTGACCGTCTGTTGCAGCTGTGCTCAGATAACCGCCTATTTTTTGCAAAT] consensusID : consensus_8818#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 293 fasta sequence [GTCCAACGTTGGGACGAATTTGGGGGTCGCCAGGTCAAAAGATGTTTTTCCTTATGCTTAAAGTTAGTATTTGCAAGAAATAGGCGGTTATCTGAGCATAGCTGCAACAGACGGTCGCCATTATCTGTTCTTTTCGCCATGACACCATAAGATCCACCCAGGTGTCCTTCCCTTTCACTTAGTTTACCTACTTGAGCATTAAAGTCACCTGCTACTATTACTACATCAGAACGCCTAGCTTCTCGGAGAAGGTCAGAAAGTTTCCTGTAGAACTCATCTTTTATATCGTCTGA] [+] EMBL BG930948 [GTCCAACGTTGGGACGAATTTGGGGGTCGCCAGGTCAAAAGATGTTTTTCCTTATGCTTAAAGTTAGTATTTGCAAGAAATAGGCGGTTATCTGAGCATAGCTGCAACAGACGGTCGCCATTATCTGTTCTTTTCGCCATGACACCATAAGATCCACCCAGGTGTCCTTCCCTTTCACTTAGTTTACCTACTTGAGCATTAAAGTCACCTGCTACTATTACTACATCAGAACGCCTAGCTTCTCGGAGAAGGTCAGAAAGTTTCCTGTAGAACTCATCTTTTATATCGTCTGA] [+] EMBL BG931420 [ GTCGCCAGGTCAAAAGATGTTTTTCCTTATGCTTAAGGTTAGTATTTGCAAGAAATAGGCGGTTATCTGAGCATAGCTGCAACAGACGGTCGCCATTATCTGTTCT ] [+] EMBL BG930561 [ GGTCAAAAGATGTTTTTCCTTATGCTTAAAGTTAGTATTTGCAAGAAATAGGCGGTTATCTGAGCATAGCTGCAACAGACGGTCGCCATTATCTGTTCTTTTCGCCATGACACCATAAGATCCACCCAGGTGTCCTTCCCTTTCACTTAGTTTACCTACTTGAGCATTAAAGTCACCTGCTACTATTACTACATCAGAACGCCTAGCTTCTCGGAGAAGGTCAGAAAGTTTCCTGTAGAACTCATCTTTTATATCGTCTGA] [+] EMBL BG931427 [ atGTCAAAAGATGTTTTTCCTTATGCTTAAAGTTAGTATTTGCAAGAAATAGGCGGTTATCTGAGCACAGCTGCAACAGACGGTCGCCATTATCTGTTCTTTTAGTAACGACACCATAAGA ] consensusID : consensus_8818#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence [GGTATTGTGATAGACGCTGGATCAGACGATATAAAAGATGAGTTCTACAGGAGACTTTCCGACCTTCTCCGAAAAGCTAGGCGTTCTGTTGTAGTAATAGTGGCAGGTGACTTTAATGCTCAAGTAGGTAAACTAAGCGAAATAGAAAGACACCTGAGTGGATCTTATGGTGTCGTGGCTCAAAGAACAGATAATGGCGACCGTCTGCTGCAACTGTGCTCGGATAACCGGCTGTTTCTTACAAATACTAAC] [+] EMBL BG931080 [GGTATTGTGATAGACGCTGGATCAGACGATATAAAAGATGAGTTCTACAGGAGACTTTCCGACCTTCTCCGAAAAGCTAGGCGTTCTGTTGTAGTAATAGTGGCAGGTGACTTTAATGCTCAAGTAGGTAAACTAAGCGAAATAGAAAGACACCTGAGTGGATCTTATGGTGTCGTGGCTCAAAGAACAGATAATGGCGACCGTCTGCTGCAACTGTGCTCGGATAACCGGCTGTTTCTTACAAATACTAAC] consensusID : consensus_8818#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 189 fasta sequence [GTCACCATGTCAAACGATGTNATTCCTTATGCTTAAAGTTAGTATTTGCAAGAAATAAGCGGTGATCTGAGCATAGCTGCAACAGACGGTCGCCATTATCTGTTCTTTTAGCCATGACACCATAAGATCCACCCAGGTGTCTTTCCCTTTTCACTTAATTTACCTACTTGAGCAATAAGGTCACCAGCC] [+] EMBL BG931056 [GTCACCATGTCAAACGATGTNATTCCTTATGCTTAAAGTTAGTATTTGCAAGAAATAAGCGGTGATCTGAGCATAGCTGCAACAGACGGTCGCCATTATCTGTTCTTTTAGCCATGACACCATAAGATCCACCCAGGTGTCTTTCCCTTTTCACTTAATTTACCTACTTGAGCAATAAGGTCACCAGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8818#1 ------------------------------------------------------------ consensus_8818#3 ------------------------------------------------------------ consensus_8818#2 ------------------------------------------------------------ consensus_8818#0 AGATTTAACATGTGTATGTCACTGGATAAGGTGAAATATCAGATTATTTGATTTGAGTTC 60 consensus_8818#1 -------------------------------------GTCCAACGTTG-GGACGAATTTG 22 consensus_8818#3 ------------------------------------------------------------ consensus_8818#2 -----------------------------------------GGTATTG-TGATAGACGCT 18 consensus_8818#0 AGTTATGATTTGAGTGATTTCTTCATTTTACCTCGTAAGATCATATAGCTGACTGAAAAA 120 consensus_8818#1 GGGGTCGCCAGGTCAAAAGATGTTTTTCCTTATGCTTAAAGTTAGTATTTGCAAGAAATA 82 consensus_8818#3 ---GTCACCATGTCAAACGATGTNATTCCTTATGCTTAAAGTTAGTATTTGCAAGAAATA 57 consensus_8818#2 GGATCAGACGATATAAAAGATGAGTTCTACAGGAGACTTTCCGACCTTCTCCGAAAAGCT 78 consensus_8818#0 TAATTGTGCGATTTCTGA-ATGTATTCTTTTTCACTTTATAGTTACTTTT-CAAAGAACA 178 * *** * * * * * * consensus_8818#1 GGCGGTTATCTGAGCATAGCTGCAACAGACGGTCGCCATTATCTGTTCTTTTCGCCATGA 142 consensus_8818#3 AGCGGTGATCTGAGCATAGCTGCAACAGACGGTCGCCATTATCTGTTCTTTTAGCCATGA 117 consensus_8818#2 AGGCGTTCTGTTGTAGTAATAGTGGCAGGTGACTTTAATGCTCAAGTAGGTAAACTAAGC 138 consensus_8818#0 CGTTTTATTTTTAATTTCTTCTTCACAATTTATGTTTATACGC-GGAATTTAAACTGATA 237 * * * * * ** ** * * * consensus_8818#1 CACCATAAG-ATCCACCCAGGTGTCCTTCCCTTT-CACTTAGTTTACCTACTTGAGCATT 200 consensus_8818#3 CACCATAAG-ATCCACCCAGGTGTCTTTCCCTTTTCACTTAATTTACCTACTTGAGCAAT 176 consensus_8818#2 GAAATAGAA-AGACACCTGAGTGGATCTTATGGT-GTCGTGGCTCAAAGAACAGATAATG 196 consensus_8818#0 AGTTTTGTTTGTACAAATAAACGAA---AAGGATAGACGTCAGTCTGA-----GATAATG 289 ** * * * * * ** * consensus_8818#1 AAAGTCACCTGCTACTATTACTACATCAGAACGCCTAGCTTCTCGGAGAAGGTCAGAAAG 260 consensus_8818#3 AAGGTCACCAGCC----------------------------------------------- 189 consensus_8818#2 GCGACCGTCTGCTGCAACTGTGCTCGGATAACCGGCTGTTTCTTACAAATACTAAC---- 252 consensus_8818#0 GTGACCGTCTGTTGCAGCTGTGCTCAGATAACCGCCTATTTTTTGCAAAT---------- 339 * * * consensus_8818#1 TTTCCTGTAGAACTCATCTTTTATATCGTCTGA 293 consensus_8818#3 --------------------------------- consensus_8818#2 --------------------------------- consensus_8818#0 --------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||