cluster # 8818

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Schistosoma mansoni
cluster # 8818 cluster # 8818 Sequences # 7 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8818#0 length = 339 sequences # 1
consensus_8818#1 length = 293 sequences # 4

consensus_8818#2 length = 252 sequences # 1
consensus_8818#3 length = 189 sequences # 1

consensusID : consensus_8818#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence

                              [AGATTTAACATGTGTATGTCACTGGATAAGGTGAAATATCAGATTATTTGATTTGAGTTCAGTTATGATTTGAGTGATTTCTTCATTTTACCTCGTAAGATCATATAGCTGACTGAAAAATAATTGTGCGATTTCTGAATGTATTCTTTTTCACTTTATAGTTACTTTTCAAAGAACACGTTTTATTTTTAATTTCTTCTTCACAATTTATGTTTATACGCGGAATTTAAACTGATAAGTTTTGTTTGTACAAATAAACGAAAAGGATAGACGTCAGTCTGAGATAATGGTGACCGTCTGTTGCAGCTGTGCTCAGATAACCGCCTATTTTTTGCAAAT]

[+] EMBL CD177895             [AGATTTAACATGTGTATGTCACTGGATAAGGTGAAATATCAGATTATTTGATTTGAGTTCAGTTATGATTTGAGTGATTTCTTCATTTTACCTCGTAAGATCATATAGCTGACTGAAAAATAATTGTGCGATTTCTGAATGTATTCTTTTTCACTTTATAGTTACTTTTCAAAGAACACGTTTTATTTTTAATTTCTTCTTCACAATTTATGTTTATACGCGGAATTTAAACTGATAAGTTTTGTTTGTACAAATAAACGAAAAGGATAGACGTCAGTCTGAGATAATGGTGACCGTCTGTTGCAGCTGTGCTCAGATAACCGCCTATTTTTTGCAAAT]




>consensus_8818#0
AGATTTAACATGTGTATGTCACTGGATAAGGTGAAATATCAGATTATTTGATTTGAGTTC
AGTTATGATTTGAGTGATTTCTTCATTTTACCTCGTAAGATCATATAGCTGACTGAAAAA
TAATTGTGCGATTTCTGAATGTATTCTTTTTCACTTTATAGTTACTTTTCAAAGAACACG
TTTTATTTTTAATTTCTTCTTCACAATTTATGTTTATACGCGGAATTTAAACTGATAAGT
TTTGTTTGTACAAATAAACGAAAAGGATAGACGTCAGTCTGAGATAATGGTGACCGTCTG
TTGCAGCTGTGCTCAGATAACCGCCTATTTTTTGCAAAT

consensusID : consensus_8818#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 293
fasta sequence

                              [GTCCAACGTTGGGACGAATTTGGGGGTCGCCAGGTCAAAAGATGTTTTTCCTTATGCTTAAAGTTAGTATTTGCAAGAAATAGGCGGTTATCTGAGCATAGCTGCAACAGACGGTCGCCATTATCTGTTCTTTTCGCCATGACACCATAAGATCCACCCAGGTGTCCTTCCCTTTCACTTAGTTTACCTACTTGAGCATTAAAGTCACCTGCTACTATTACTACATCAGAACGCCTAGCTTCTCGGAGAAGGTCAGAAAGTTTCCTGTAGAACTCATCTTTTATATCGTCTGA]

[+] EMBL BG930948             [GTCCAACGTTGGGACGAATTTGGGGGTCGCCAGGTCAAAAGATGTTTTTCCTTATGCTTAAAGTTAGTATTTGCAAGAAATAGGCGGTTATCTGAGCATAGCTGCAACAGACGGTCGCCATTATCTGTTCTTTTCGCCATGACACCATAAGATCCACCCAGGTGTCCTTCCCTTTCACTTAGTTTACCTACTTGAGCATTAAAGTCACCTGCTACTATTACTACATCAGAACGCCTAGCTTCTCGGAGAAGGTCAGAAAGTTTCCTGTAGAACTCATCTTTTATATCGTCTGA]
[+] EMBL BG931420             [                         GTCGCCAGGTCAAAAGATGTTTTTCCTTATGCTTAAGGTTAGTATTTGCAAGAAATAGGCGGTTATCTGAGCATAGCTGCAACAGACGGTCGCCATTATCTGTTCT                                                                                                                                                                  ]
[+] EMBL BG930561             [                                GGTCAAAAGATGTTTTTCCTTATGCTTAAAGTTAGTATTTGCAAGAAATAGGCGGTTATCTGAGCATAGCTGCAACAGACGGTCGCCATTATCTGTTCTTTTCGCCATGACACCATAAGATCCACCCAGGTGTCCTTCCCTTTCACTTAGTTTACCTACTTGAGCATTAAAGTCACCTGCTACTATTACTACATCAGAACGCCTAGCTTCTCGGAGAAGGTCAGAAAGTTTCCTGTAGAACTCATCTTTTATATCGTCTGA]
[+] EMBL BG931427             [                               atGTCAAAAGATGTTTTTCCTTATGCTTAAAGTTAGTATTTGCAAGAAATAGGCGGTTATCTGAGCACAGCTGCAACAGACGGTCGCCATTATCTGTTCTTTTAGTAACGACACCATAAGA                                                                                                                                             ]




>consensus_8818#1
GTCCAACGTTGGGACGAATTTGGGGGTCGCCAGGTCAAAAGATGTTTTTCCTTATGCTTA
AAGTTAGTATTTGCAAGAAATAGGCGGTTATCTGAGCATAGCTGCAACAGACGGTCGCCA
TTATCTGTTCTTTTCGCCATGACACCATAAGATCCACCCAGGTGTCCTTCCCTTTCACTT
AGTTTACCTACTTGAGCATTAAAGTCACCTGCTACTATTACTACATCAGAACGCCTAGCT
TCTCGGAGAAGGTCAGAAAGTTTCCTGTAGAACTCATCTTTTATATCGTCTGA

consensusID : consensus_8818#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 252
fasta sequence

                              [GGTATTGTGATAGACGCTGGATCAGACGATATAAAAGATGAGTTCTACAGGAGACTTTCCGACCTTCTCCGAAAAGCTAGGCGTTCTGTTGTAGTAATAGTGGCAGGTGACTTTAATGCTCAAGTAGGTAAACTAAGCGAAATAGAAAGACACCTGAGTGGATCTTATGGTGTCGTGGCTCAAAGAACAGATAATGGCGACCGTCTGCTGCAACTGTGCTCGGATAACCGGCTGTTTCTTACAAATACTAAC]

[+] EMBL BG931080             [GGTATTGTGATAGACGCTGGATCAGACGATATAAAAGATGAGTTCTACAGGAGACTTTCCGACCTTCTCCGAAAAGCTAGGCGTTCTGTTGTAGTAATAGTGGCAGGTGACTTTAATGCTCAAGTAGGTAAACTAAGCGAAATAGAAAGACACCTGAGTGGATCTTATGGTGTCGTGGCTCAAAGAACAGATAATGGCGACCGTCTGCTGCAACTGTGCTCGGATAACCGGCTGTTTCTTACAAATACTAAC]




>consensus_8818#2
GGTATTGTGATAGACGCTGGATCAGACGATATAAAAGATGAGTTCTACAGGAGACTTTCC
GACCTTCTCCGAAAAGCTAGGCGTTCTGTTGTAGTAATAGTGGCAGGTGACTTTAATGCT
CAAGTAGGTAAACTAAGCGAAATAGAAAGACACCTGAGTGGATCTTATGGTGTCGTGGCT
CAAAGAACAGATAATGGCGACCGTCTGCTGCAACTGTGCTCGGATAACCGGCTGTTTCTT
ACAAATACTAAC

consensusID : consensus_8818#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 189
fasta sequence

                              [GTCACCATGTCAAACGATGTNATTCCTTATGCTTAAAGTTAGTATTTGCAAGAAATAAGCGGTGATCTGAGCATAGCTGCAACAGACGGTCGCCATTATCTGTTCTTTTAGCCATGACACCATAAGATCCACCCAGGTGTCTTTCCCTTTTCACTTAATTTACCTACTTGAGCAATAAGGTCACCAGCC]

[+] EMBL BG931056             [GTCACCATGTCAAACGATGTNATTCCTTATGCTTAAAGTTAGTATTTGCAAGAAATAAGCGGTGATCTGAGCATAGCTGCAACAGACGGTCGCCATTATCTGTTCTTTTAGCCATGACACCATAAGATCCACCCAGGTGTCTTTCCCTTTTCACTTAATTTACCTACTTGAGCAATAAGGTCACCAGCC]




>consensus_8818#3
GTCACCATGTCAAACGATGTNATTCCTTATGCTTAAAGTTAGTATTTGCAAGAAATAAGC
GGTGATCTGAGCATAGCTGCAACAGACGGTCGCCATTATCTGTTCTTTTAGCCATGACAC
CATAAGATCCACCCAGGTGTCTTTCCCTTTTCACTTAATTTACCTACTTGAGCAATAAGG
TCACCAGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8818#1      ------------------------------------------------------------
consensus_8818#3      ------------------------------------------------------------
consensus_8818#2      ------------------------------------------------------------
consensus_8818#0      AGATTTAACATGTGTATGTCACTGGATAAGGTGAAATATCAGATTATTTGATTTGAGTTC 60
                                                                                  

consensus_8818#1      -------------------------------------GTCCAACGTTG-GGACGAATTTG 22
consensus_8818#3      ------------------------------------------------------------
consensus_8818#2      -----------------------------------------GGTATTG-TGATAGACGCT 18
consensus_8818#0      AGTTATGATTTGAGTGATTTCTTCATTTTACCTCGTAAGATCATATAGCTGACTGAAAAA 120
                                                                                  

consensus_8818#1      GGGGTCGCCAGGTCAAAAGATGTTTTTCCTTATGCTTAAAGTTAGTATTTGCAAGAAATA 82
consensus_8818#3      ---GTCACCATGTCAAACGATGTNATTCCTTATGCTTAAAGTTAGTATTTGCAAGAAATA 57
consensus_8818#2      GGATCAGACGATATAAAAGATGAGTTCTACAGGAGACTTTCCGACCTTCTCCGAAAAGCT 78
consensus_8818#0      TAATTGTGCGATTTCTGA-ATGTATTCTTTTTCACTTTATAGTTACTTTT-CAAAGAACA 178
                              *          ***   *                     * * * *  *   

consensus_8818#1      GGCGGTTATCTGAGCATAGCTGCAACAGACGGTCGCCATTATCTGTTCTTTTCGCCATGA 142
consensus_8818#3      AGCGGTGATCTGAGCATAGCTGCAACAGACGGTCGCCATTATCTGTTCTTTTAGCCATGA 117
consensus_8818#2      AGGCGTTCTGTTGTAGTAATAGTGGCAGGTGACTTTAATGCTCAAGTAGGTAAACTAAGC 138
consensus_8818#0      CGTTTTATTTTTAATTTCTTCTTCACAATTTATGTTTATACGC-GGAATTTAAACTGATA 237
                       *   *  * *     *        **          **   *       *   *     

consensus_8818#1      CACCATAAG-ATCCACCCAGGTGTCCTTCCCTTT-CACTTAGTTTACCTACTTGAGCATT 200
consensus_8818#3      CACCATAAG-ATCCACCCAGGTGTCTTTCCCTTTTCACTTAATTTACCTACTTGAGCAAT 176
consensus_8818#2      GAAATAGAA-AGACACCTGAGTGGATCTTATGGT-GTCGTGGCTCAAAGAACAGATAATG 196
consensus_8818#0      AGTTTTGTTTGTACAAATAAACGAA---AAGGATAGACGTCAGTCTGA-----GATAATG 289
                                   **       *          *   * *   *         **  *  

consensus_8818#1      AAAGTCACCTGCTACTATTACTACATCAGAACGCCTAGCTTCTCGGAGAAGGTCAGAAAG 260
consensus_8818#3      AAGGTCACCAGCC----------------------------------------------- 189
consensus_8818#2      GCGACCGTCTGCTGCAACTGTGCTCGGATAACCGGCTGTTTCTTACAAATACTAAC---- 252
consensus_8818#0      GTGACCGTCTGTTGCAGCTGTGCTCAGATAACCGCCTATTTTTTGCAAAT---------- 339
                           *  * *                                                 

consensus_8818#1      TTTCCTGTAGAACTCATCTTTTATATCGTCTGA 293
consensus_8818#3      ---------------------------------
consensus_8818#2      ---------------------------------
consensus_8818#0      ---------------------------------