cluster # 8821

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Schistosoma mansoni
cluster # 8821 cluster # 8821 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8821#0 length = 649 sequences # 2

consensus_8821#1 length = 403 sequences # 5

consensusID : consensus_8821#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 649
fasta sequence

                              [TACGAGCCAANAATTCGGCACGAGGCGGTTGGGCTATGTGTTCCTAGTTTCGATTCCGACGTTGTCATTATCTGAGGCTTCTGTTACCGCTGATCGTTGTTTATTGCTTTCCTTAAGAAATTTTTAATAAGCTACGAGAAAATACTAGAGACTAATGGAAGCTGTTGCTAACTATCCATTTACTCCTACTGAACCTGACGAACTTGGGTTTGAAAAAGGTAGTACTTTATATATTGTTGGTATGGAAGAGGATCCGAATTGGTATAAAGCCCGGCTAGGGAACCAAGAAGGCATGGTACCTGCAAACTATATTTCTTTGTATCCTCATCCATGGTACATACCCAGGTGTAGTCGGCGAGAGGCAGAGGCCAGACTTTTAGAAACTGATCCGGATACGAACCGGGACGTACAACCTGATGGAGCATTTATTTTACGGCAAAGCGAAAATGATCCTGGTCAGTTCAGTATCTCGGTTAAAGAAGGTTCGTCGGTTTTGCACTTCCGTATATTTTTCGATCCAAAGGGTAAGTATTACATCTGGACGAATAAATTCGACTCAATTAATGCCCTGATCGATTATCATCGTCATCAAACAATATACGGGGTAAAAGCACTCCTGCTACGTGATTGTGTTTCAAGTAAACTTTTG]

[+] EMBL CD080751             [TACGAGCCAANAATTCGGCACGAGGCGGTTGGGCTATGTGTTCCTAGTTTCGATTCCGACGTTGTCATTATCTGAGGCTTCTGTTACCGCTGATCGTTGTTTATTGCTTTCCTTAAGAAATTTTTAATAAGCTACGAGAAAATACTAGAGACTAATGGAAGCTGTTGCTAACTATCCATTTACTCCTACTGAACCTGACGAACTTGGGTTTGAAAAAGGTAGTACTTTATATATTGTTGGTATGGAAGAGGATCCGAATTGGTATAAAGCCCGGCTAGGGAACCAAGAAGGCATGGTACCTGCAAACTATATTTCTTTGTATCCTCATCCATGGTACATACCCAGGTGTAGTCGGCGAGAGGCAGAGGCCAGACTTTTAGAAACTGATCCGGATACGAACCGGGACGTACAACCTGATGGAGCATTTATTTTACGGCAAAGCGAAAATGATCCTGGTCAGTTCAGTATCTCGGTTAAAGAAGGTTCGTCGGTTTTGCACTTCCGTATATTTTTCGATCCAAAGGGTAAGTATTACATCTGGACGAATAAATTCGACTCAATTAATGCCCTGATCGATTATCATCGTCATCAAACAATATACGGGGTAAAAGCACTCCTGCTACGTGATTGTGTTTCAAGTAAACTTTTG]
[+] EMBL CD083816             [    AGGCCAGAA TCGGCACGAGG     GGGCTATGTGTTCCTAGTTTCGATTCCGACGTTGTCATTATCTGAGGCTTCTGTTACCGCTGATCGTTGTTTATTGCTTTCCTTAAGAAATTTTTAATAAGCTACGAGAAAATACTAGAGACTAATGGAAGCTGTTGCTAACTATCCATTTACTCCTACTGAACCTGACGAACTTGGGTTTGAAAAAGGTAGTACTTTATATATTGTTGGTATGGAAGAGGATCCGAATTGGTATAAAGCCCGGCTAGGGAACCAAGAAGGCATGGTACCTGCAAACTATATTTCTTTGTATCCTCATCCATGGTACATACCCAGGTGTAGTCGGCGAGAGGCAGAGGCCAGACTTTTAGAAACTGATCCGGATACGAACCGGGACGTACAACCTGATGGAGCATTTATTTTACGGCAAAGCGAAAATGATCCTGGTCAGTTCAGTATCTCG                                                                                                                                                                                 ]




>consensus_8821#0
TACGAGCCAANAATTCGGCACGAGGCGGTTGGGCTATGTGTTCCTAGTTTCGATTCCGAC
GTTGTCATTATCTGAGGCTTCTGTTACCGCTGATCGTTGTTTATTGCTTTCCTTAAGAAA
TTTTTAATAAGCTACGAGAAAATACTAGAGACTAATGGAAGCTGTTGCTAACTATCCATT
TACTCCTACTGAACCTGACGAACTTGGGTTTGAAAAAGGTAGTACTTTATATATTGTTGG
TATGGAAGAGGATCCGAATTGGTATAAAGCCCGGCTAGGGAACCAAGAAGGCATGGTACC
TGCAAACTATATTTCTTTGTATCCTCATCCATGGTACATACCCAGGTGTAGTCGGCGAGA
GGCAGAGGCCAGACTTTTAGAAACTGATCCGGATACGAACCGGGACGTACAACCTGATGG
AGCATTTATTTTACGGCAAAGCGAAAATGATCCTGGTCAGTTCAGTATCTCGGTTAAAGA
AGGTTCGTCGGTTTTGCACTTCCGTATATTTTTCGATCCAAAGGGTAAGTATTACATCTG
GACGAATAAATTCGACTCAATTAATGCCCTGATCGATTATCATCGTCATCAAACAATATA
CGGGGTAAAAGCACTCCTGCTACGTGATTGTGTTTCAAGTAAACTTTTG

consensusID : consensus_8821#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 403
fasta sequence

                              [GATTGTAATAGCAAGCGTCCTATATGGTTGGGCTATGTGTTCCTAGTTTCGATTCCGACGTTGTCATTATCTGAGGCTTCTGTTACCGCTGATCGTTGTTTATTGCTTTCCTTAAGAAATTTTTAATAAGCTACGAGAAAATACTAGAGACTAATGGAAGCTGTTGCTAACTATCCATTTACTCCTACTGAACCTGACGAACTTGGGTTTGAAAAAGGTAGTACTTTATATATTGTTGGTATGGAAGAGGATCCGAATTGGTATAAAGCCCGGCTAGGGAACCAAGAAGGCATGGTACCTGCAAACTATATTTCTTTGTATCCTCATCCATGGTACATACCCAGGTGTAGTCGGCGAGAGGCAGAGGCCAGACTTTTAGAAACTGATCCGGATACGAACCGGG]

[+] EMBL CD161014             [GATTGTAATAGCAAGCGTCCTATATGGTTGGGCTATGTGTTCCTAGTTTCGATTCCGACGTTGTCATTATCTGAGGCTTCTGTTACCGCTGATCGTTGTTTATTGCTTTCCTTAAGAAATTTTTAATAAGCTACGAGAAAATACTAGAGACTAATGGAAGCTGTTGCTAACTATCCATTTACTCCTACTGAACCTGACGAACTTGGGTTTGAAAAAGGTAGTACTTTATATATTGTTGGTATGGAAGAGGATCCGAATTGGTATAAAGCCCGGCTAGGGAACCAAGAAGGCATGGTACCTGCAAACTATATTTCTTTGTATCCTCATCCATGGTACATACCCAGGTGTAGTCGGCGAGAGGCAGAGGCCAGACTTTTAGAAACTGATCCGGATACGAA     ]
[+] EMBL CD161352             [GATTGTAATAGCAAGCGTCCTATATGGTTGGGCTATGTGTTCCTAGTTTCGATTCCGACGTTGTCATTATCTGAGGCTTCTGTTACCGCTGATCGTTGTTTATTGCTTTCCTTAAGAAATTTTTAATAAGCTACGAGAAAATACTAGAGACTAATGGAAGCTGTTGCTAACTATCCATTTACTCCTACTGAACCTGACGAACTTGGGTTTGAAAAAGGTAGTACTTTATATATTGTTGGTATGGAAGAGGATCCGAATTGGTATAAAGCCCGGCTAGGGAACCAAGAAGGCATGGTACCTGCAAACTATATTTCTTTGTATCCTCATCCATGGTACATACCCAGGTGTAGTCGGCGAGAGGCAGAGGCCAGACTTTTAGAAACTGATCCGGATACGAA     ]
[-] EMBL CD185819             [ ATTGTAATAGCAAGCGTCCTATATGGTTGGGCTATGTGTTCCTAGTTTCGATTCCGACGTTGTCATTATCTGAGGCTTTTGTTACCGCTGATCGTTGTTTATTGCTTTCCTTAAGAAATTTTTAATAAGCTACGAGAAAATACTAGAGACTAATGGAAGCTGTTGCTAACTATCCATTTACTCCTACTGAACCTGACGAACTTGGGTTTGAAAAAGGTAGTACTTTATATATTGTTGGTATGGAAGAGGATCCGAATTGGTATAAAGCCCGGCTAGGGAACCAAGAAGGCATGGTACCTGCAAACTATATTTCTTTGTATCCTCATCCA                                                                         ]
[-] EMBL CD121514             [             AGCGTCCTATATGGTTGGGCTATGTGTTCCTAGTTTCGATTCCGACGTTGTCATTATCTGAGGCTTCTGTTACCGCTGATCGTTGTTTATTGCTTTCCTTAAGAAATTTTTAATAAGCTACGAGAAAATACTAGAGACTAATGGAAGCTGTTGCTAACTATCCATTTACTCCTACTGAACCTGACGAACTTGGGTTTGAAAAAGGTAGTACTTTATATATTGTTGGTATGGAAGAGGATCCGAATTGGTATAAAGCCCGGCTAGGGAACCAAGAAGGCATGGTACCTGCAAACTATATTTCTTTGTATCCTCATCCATGGTACATACCCAGGTGTAGTCGGCGAGAGGCAGAGGCCAGACTTTTAGAAACTGATCCGGATACGAACCGGG]
[+] EMBL CD186670             [                                                                                           ATCGTTGTTTATTGCTTTCCTTAAGAAATTTTTAATAAGCTACGAGAAAATACTAGAGACTAATGGAAGCTGTTGCTAACTATCCATTTACTCCTACTGAACCTGACGAACTTGGGTTTGAAAAAGGTAGTACTTTATATATTGTTGGTATGGAAGAGGATCCGAATTGGTATAAAGCCCGGCTAGGGAACCAAGAAGGCATGGTACCTGCAAACTATATTTCTTTGTATCCTCATCCATGGTACATACCCAGGTGTAGTCGGCGAGAGGCAGAGGCCAGACTTT                           ]




>consensus_8821#1
GATTGTAATAGCAAGCGTCCTATATGGTTGGGCTATGTGTTCCTAGTTTCGATTCCGACG
TTGTCATTATCTGAGGCTTCTGTTACCGCTGATCGTTGTTTATTGCTTTCCTTAAGAAAT
TTTTAATAAGCTACGAGAAAATACTAGAGACTAATGGAAGCTGTTGCTAACTATCCATTT
ACTCCTACTGAACCTGACGAACTTGGGTTTGAAAAAGGTAGTACTTTATATATTGTTGGT
ATGGAAGAGGATCCGAATTGGTATAAAGCCCGGCTAGGGAACCAAGAAGGCATGGTACCT
GCAAACTATATTTCTTTGTATCCTCATCCATGGTACATACCCAGGTGTAGTCGGCGAGAG
GCAGAGGCCAGACTTTTAGAAACTGATCCGGATACGAACCGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8821#0      TACGAGCCAANAATTCGGCA--CGAGGCGGTTGGGCTATGTGTTCCTAGTTTCGATTCCG 58
consensus_8821#1      ---GATTGTAATAGCAAGCGTCCTATATGGTTGGGCTATGTGTTCCTAGTTTCGATTCCG 57
                         **    *  *    **   * *   ********************************

consensus_8821#0      ACGTTGTCATTATCTGAGGCTTCTGTTACCGCTGATCGTTGTTTATTGCTTTCCTTAAGA 118
consensus_8821#1      ACGTTGTCATTATCTGAGGCTTCTGTTACCGCTGATCGTTGTTTATTGCTTTCCTTAAGA 117
                      ************************************************************

consensus_8821#0      AATTTTTAATAAGCTACGAGAAAATACTAGAGACTAATGGAAGCTGTTGCTAACTATCCA 178
consensus_8821#1      AATTTTTAATAAGCTACGAGAAAATACTAGAGACTAATGGAAGCTGTTGCTAACTATCCA 177
                      ************************************************************

consensus_8821#0      TTTACTCCTACTGAACCTGACGAACTTGGGTTTGAAAAAGGTAGTACTTTATATATTGTT 238
consensus_8821#1      TTTACTCCTACTGAACCTGACGAACTTGGGTTTGAAAAAGGTAGTACTTTATATATTGTT 237
                      ************************************************************

consensus_8821#0      GGTATGGAAGAGGATCCGAATTGGTATAAAGCCCGGCTAGGGAACCAAGAAGGCATGGTA 298
consensus_8821#1      GGTATGGAAGAGGATCCGAATTGGTATAAAGCCCGGCTAGGGAACCAAGAAGGCATGGTA 297
                      ************************************************************

consensus_8821#0      CCTGCAAACTATATTTCTTTGTATCCTCATCCATGGTACATACCCAGGTGTAGTCGGCGA 358
consensus_8821#1      CCTGCAAACTATATTTCTTTGTATCCTCATCCATGGTACATACCCAGGTGTAGTCGGCGA 357
                      ************************************************************

consensus_8821#0      GAGGCAGAGGCCAGACTTTTAGAAACTGATCCGGATACGAACCGGGACGTACAACCTGAT 418
consensus_8821#1      GAGGCAGAGGCCAGACTTTTAGAAACTGATCCGGATACGAACCGGG-------------- 403
                      **********************************************              

consensus_8821#0      GGAGCATTTATTTTACGGCAAAGCGAAAATGATCCTGGTCAGTTCAGTATCTCGGTTAAA 478
consensus_8821#1      ------------------------------------------------------------
                                                                                  

consensus_8821#0      GAAGGTTCGTCGGTTTTGCACTTCCGTATATTTTTCGATCCAAAGGGTAAGTATTACATC 538
consensus_8821#1      ------------------------------------------------------------
                                                                                  

consensus_8821#0      TGGACGAATAAATTCGACTCAATTAATGCCCTGATCGATTATCATCGTCATCAAACAATA 598
consensus_8821#1      ------------------------------------------------------------
                                                                                  

consensus_8821#0      TACGGGGTAAAAGCACTCCTGCTACGTGATTGTGTTTCAAGTAAACTTTTG 649
consensus_8821#1      ---------------------------------------------------