cluster # 8822

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Schistosoma mansoni
cluster # 8822 cluster # 8822 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8822#0 length = 658 sequences # 2

consensus_8822#1 length = 566 sequences # 4
consensus_8822#2 length = 87 sequences # 1

consensusID : consensus_8822#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 658
fasta sequence

                              [GTGATAGTGGTGATTCACCAGAACGTACTAAAGGTGAGCCTGGACCTGCCGGTGAACCTGGAACTGAAGGAGATGAAGGAGACCCAGGTATTCCTGGACAAAAGGGAGAGCCTGGGGCTGAAGGTACGCACTCAAAGTGTTAAGAATATTTTCTGATTAGTTACATCAGTGATTAATATGCATGAAGGCCGAACTAACTGTAAATATTATCATTTCAAGCCGGTCAACAAGGAGAAACTGGTAGCTCTGGAGAAAAGGGAGATCCTGGACCTAAAGGTCTACCTGGCCCTAAAGGAGAACCCAGTTCAGATATGGAGTCAGGCGATGAAGGTCCCAAGGGCGAACCTGGTTTAATGGGATCAGAAGGAGAAAAAGGTGGTGTTGGTGACGTTGCTGAATGCAATGAAGCCGGTTTACTTGGAGATCCTGGACCTGATGGAGCAATGGGAACAATTGGCAATTCAGGTGATGATGGAGAACAAGGAGAAGATGGTGATGTTGGACCGGAAGGAGAACCGGGTCCTGATGGTGAGCTAAATGAATATCTTAACATANTTGT-TGNGTCTACGTATTATAACTAGTCAAAAATATATCATAAAAATAATGGCACTAATCTTAGTTAAATATCTATTAAAAACCTGGGAACACTGGACGTTCG]

[+] EMBL CD085478             [GTGATAGTGGTGATTCACCAGAACGTACTAAAGGTGAGCCTGGACCTGCCGGTGAACCTGGAACTGAAGGAGATGAAGGAGACCCAGGTATTCCTGGACAAAAGGGAGAGCCTGGGGCTGAAGGTACGCACTCAAAGTGTTAAGAATATTTTCTGATTAGTTACATCAGTGATTAATATGCATGAAGGCCGAACTAACTGTAAATATTATCATTTCAAGCCGGTCAACAAGGAGAAACTGGTAGCTCTGGAGAAAAGGGAGATCCTGGACCTAAAGGTCTACCTGGCCCTAAAGGAGAACCCAGTTCAGATATGGAGTCAGGCGATGAAGGTCCCAAGGGCGAACCTGGTTTAATGGGATCAGAAGGAGAAAAAGGTGGTGTTGGTGACGTTGCTGAATGCAATGAAGCCGGTTTACTTGGAGATCCTGGACCTGATGGAGCAATGGGAACAATTGGCAATTCAGGTGATGATGGAGAACAAGGAGAAGATGGTGATGTTGGACCGGAAGGAGAACCGGGTCCTGATGGTGAGCTAAATGAATATCTTAACATANTTGT TGNGTCTACGTATTATAACTAGTCAAAAATATATCATAAAAATAATGGCACTAATCTTAGTTAAATATCTATTAAAAACCTGGGAACACTGGACGTTCG]
[+] EMBL CD085473             [GTGATAGTGGTGATTCACCAGAACGTACTAAAGGTGAGCCTGGACCTGCCGGTGAACCTGGAACTGAAGGAGATGAAGGAGACCCAGGTATTCCTGGACAAAAGGGAGAGCCTGGGGCTGAAGGTACGCACTCAAAGTGTTAAGAATATTTTCTGATTAGTTACATCAGTGATTAATATGCATGAAGGCCGAACTAACTGTAAATATTATCATTTCAAGCCGGTCAACAAGGAGAAACTGGTAGCTCTGGAGAAAAGGGAGATCCTGGACCTAAAGGTCTACCTGGCCCTAAAGGAGAACCCAGTTCAGATATGGAGTCAGGCGATGAAGGTCCCAAGGGCGAACCTGGTTTAATGGGATCAGAAGGAGAAAAAGGTGGTGTTGGTGACGTTGCTGAATGCAATGAAGCCGGTTTACTTGGAGATCCTGGACCTGATGGAGCAATGGGAACAATTGGCAATTCAGGTGATGATGGAGAACAAGGAGAAGATGGTGATGTTGGACCGGAAGGAGAACCGGGTCCTGATGGTGAGCTAAATGAATATCTTAACATA TTGTCTGGGTCTACGTATTATAACTAGTCAAAAATATATCATAAAAATAATGGCACTAATCTTAGGTAAATATCTA                            ]




>consensus_8822#0
GTGATAGTGGTGATTCACCAGAACGTACTAAAGGTGAGCCTGGACCTGCCGGTGAACCTG
GAACTGAAGGAGATGAAGGAGACCCAGGTATTCCTGGACAAAAGGGAGAGCCTGGGGCTG
AAGGTACGCACTCAAAGTGTTAAGAATATTTTCTGATTAGTTACATCAGTGATTAATATG
CATGAAGGCCGAACTAACTGTAAATATTATCATTTCAAGCCGGTCAACAAGGAGAAACTG
GTAGCTCTGGAGAAAAGGGAGATCCTGGACCTAAAGGTCTACCTGGCCCTAAAGGAGAAC
CCAGTTCAGATATGGAGTCAGGCGATGAAGGTCCCAAGGGCGAACCTGGTTTAATGGGAT
CAGAAGGAGAAAAAGGTGGTGTTGGTGACGTTGCTGAATGCAATGAAGCCGGTTTACTTG
GAGATCCTGGACCTGATGGAGCAATGGGAACAATTGGCAATTCAGGTGATGATGGAGAAC
AAGGAGAAGATGGTGATGTTGGACCGGAAGGAGAACCGGGTCCTGATGGTGAGCTAAATG
AATATCTTAACATANTTGTTGNGTCTACGTATTATAACTAGTCAAAAATATATCATAAAA
ATAATGGCACTAATCTTAGTTAAATATCTATTAAAAACCTGGGAACACTGGACGTTCG

consensusID : consensus_8822#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 566
fasta sequence

                              [ATCCAGGTCCACCAGGTATTGAAGGTCCTCAAGGACTTCAAGGAGATCCTGGTGAAGTGATTGATGGGATCGAAGGAGATGTCGGCGAACAAGGTCCTGAAGGCCCAAAAGGATTTAAGGGGGAAGAAGGTGATGTGGGTGATAGTGGTGATTCACCAGAACTTACTAAAGGTGAGCCTGGACCTGCCGGTGAACCTGGAACTGAAGGAGATGAAGGAGACCCAGGTATTCCTGGACAAAAGGGAGAGCCTGGGGCTGAAGCCGGTCAACAAGGAGAAACTGGTAGCTCTGGAGAAAAGGGAGATCCTGGACCTAAAGGTCTGCCTGGCCCTAAAGGAGAACCCAGTTCAGATATGGAGTCAGGCGATGAAGGTCCCAAGGGCGAACCTGGTTTAATGGGATCAGAAGGAGAAAAAGGTGGTGTTGGTGACGTTGCTGAATGCAATGAAGCCGGTTTACTTGGAGATCCTGGACCTGATGGAGCAATGGGAACAATTGGCAATTCAGGTGATG-ATGGAGA-ACAAGGAGAAGATGGTGATGTTGGACCGGAAGGAGAACCGGGTCCT]

[-] EMBL CD200736             [ATCCAGGTCCACCAGGTATTGAAGGTCCTCAAGGACTTCAAGGAGATCCTGGTGAAGTGATTGATGGGATCGAAGGAGATGTCGGCGAACAAGGTCCTGAAGGCCCAAAAGGATTTAAGGGGGAAGAAGGTGATGTGGGTGATAGTGGTGATTCACCAGAACTTACTAAAGGTGAGCCTGGACCTGCCGGTGAACCTGGAACTGAAGGAGATGAAGGAGACCCAGGTATTCCTGGACAAAAGGGAGAGCCTGGGGCTGAAGCCGGTCAACAAGGAGAAACTGGTAGCTCTGGAGAAAAGGGAGATCCTGGACCTAAAGGTCTGCCTGGCCCT                                                                                                                                                                                                                                            ]
[-] EMBL CD180800             [                         TCCTCAAGGACTTCAAGGAGATCCTGGTGAAGTGATTGATGGGATCGAAGGAGATGTCGGCGAACAAGGTCCTGAAGGCCCAAAAGGATTTAAGGGGGAAGAAGGTGATGTGGGTGATAGTGGTGATTCACCAGAACTTACTAAAGGTGAGCCGGGACCTGCCGGTGAACCTGGAACTGAAGGAGATGAAGGAGACCCAGGTATTCCTGGACAAAAGGGAGAGCCTGGGGCTGAAGCCGGTCAACAAGGAGAAACTGGTAGCTCTGGAGAAAAGGGAGATCCTGGACCTAAAGGTCTGCCTGGCCCTAAAGGAGAACCCAGTTCAGATATGGAGTCAGGCGATGAAGGTCCCAAGGGCGAACCTGGTTTAATGGGATCAGAAGGAGAAAAAGGTGGTGTTGGTGACGTTGCTGAATGCAATGAAGCCGGTTTACTTGGAGATCCTGGACCTGATGGAGCAATGGGAACAATTGGCA                                                                   ]
[+] EMBL CD134400             [                                                                                              atcacatcaCCCAAAAGGATTTAAGGGGGAAGAAGGTGATGTGGGTGATAGTGGTGATTCACCAGAACTTACTAAAGGTGAGCCTGGACCTGCCGGTGAACCTGGAACTGAAGGAGATGAAGGAGACCCAGGTATTCCTGGACAAAAGGGAGAGCCTGGGGCTGAAGCCGGTCAACAAGGAGAAACTGGTAGCTCTGGAGAAAAGGGAGATCCTGGACCTAAAGGTCTGCCTGGCCCTAAAGGAGAACCCAGTTCAGATATGGAGTCAGGCGATGAAGGTCCCAAGGGCGAACCTGGTTTAATGGGATCAGAAGGAGAAAAAGGTGGTGTTGGTGACGTTGCTGAATGCAATGAAGCCGGTTTACTTGGAGATCCTGGACCTGATGGAGCAATGGGAACAATTGGCAATTCAGGTGATG ATGGAGA ACAAGGAGAAGATGGTGATGTTGGACCGGAAGGAGAACCGGGTCCT]
[+] EMBL CD171255             [                                                                                                                                                                                                                                                                                                                                                                                                                                  TGGTGTTGGTGACGTTGCTGAATGCAATGAAGCCGGTTTACTTGGAGACCCTGGACCTGATGGAGCAATGGGAACAATTGGCAATTCAGGTGATGAATGGAGATACAAGGAGGAGATGGTGATGTTGGACCGGAAGGAGAACCGGGTC  ]




>consensus_8822#1
ATCCAGGTCCACCAGGTATTGAAGGTCCTCAAGGACTTCAAGGAGATCCTGGTGAAGTGA
TTGATGGGATCGAAGGAGATGTCGGCGAACAAGGTCCTGAAGGCCCAAAAGGATTTAAGG
GGGAAGAAGGTGATGTGGGTGATAGTGGTGATTCACCAGAACTTACTAAAGGTGAGCCTG
GACCTGCCGGTGAACCTGGAACTGAAGGAGATGAAGGAGACCCAGGTATTCCTGGACAAA
AGGGAGAGCCTGGGGCTGAAGCCGGTCAACAAGGAGAAACTGGTAGCTCTGGAGAAAAGG
GAGATCCTGGACCTAAAGGTCTGCCTGGCCCTAAAGGAGAACCCAGTTCAGATATGGAGT
CAGGCGATGAAGGTCCCAAGGGCGAACCTGGTTTAATGGGATCAGAAGGAGAAAAAGGTG
GTGTTGGTGACGTTGCTGAATGCAATGAAGCCGGTTTACTTGGAGATCCTGGACCTGATG
GAGCAATGGGAACAATTGGCAATTCAGGTGATGATGGAGAACAAGGAGAAGATGGTGATG
TTGGACCGGAAGGAGAACCGGGTCCT

consensusID : consensus_8822#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 87
fasta sequence

                              [ATGGGAACAATTGGCTTTTCTTGTCATGATGGAGAATTAGGAGAAGATGGTGATGTTGGACCGGAAGGAGAACCGGGTCCTGATGGA]

[+] EMBL CD072500             [ATGGGAACAATTGGCTTTTCTTGTCATGATGGAGAATTAGGAGAAGATGGTGATGTTGGACCGGAAGGAGAACCGGGTCCTGATGGA]




>consensus_8822#2
ATGGGAACAATTGGCTTTTCTTGTCATGATGGAGAATTAGGAGAAGATGGTGATGTTGGA
CCGGAAGGAGAACCGGGTCCTGATGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8822#0      ---------------------------------------------------GTGATAGTG 9
consensus_8822#2      ------------------------------------------------------------
consensus_8822#1      ATCCAGGTCCACCAGGTATTGAAGGTCCTCAAGGACTTCAAGGAGATCCTGGTGAAGTGA 60
                                                                                  

consensus_8822#0      GTGATTCACCAGAACGTACTAAAGGTGAGCCTGGACCTGCCGGTGAACCTGGAACTGAAG 69
consensus_8822#2      ------------------------------------------------------------
consensus_8822#1      TTGATGGGATCGAAGGAGATGTCGGCGAACAAGGTCCTGAAGGCCCAAAAGGATTTAAGG 120
                                                                                  

consensus_8822#0      GAGATGAAGGAGACCCAGGTATTCCTGGACAAAAGGGAGAGCCTGGGGCTGAAGGTACGC 129
consensus_8822#2      ------------------------------------------------------------
consensus_8822#1      GGGAAGAAGGTGATGTGGGTGATAGTGGTGATTCACCAGAACTTA---CTAAAGGTGAGC 177
                                                                                  

consensus_8822#0      ACTCAAAGTGTTAAGAATATTTTCTGATTAGTTACATCAGTGATTAATATGCATGAAGGC 189
consensus_8822#2      ------------------------------------------------------------
consensus_8822#1      -CTGGACCTGCCGGTGAA----CCTGGA-ACTGAAGGAGATGAAGGAGACCCAGGTATTC 231
                                                                                  

consensus_8822#0      CGAACTAACTGTAAATATTATCATTTCAAGCCGGTCAACAAGGAGAAACTGGTAGCTCTG 249
consensus_8822#2      ------------------------------------------------------------
consensus_8822#1      CTGGACAAAAGGGAGAGCCTGGGGCTGAAGCCGGTCAACAAGGAGAAACTGGTAGCTCTG 291
                                                                                  

consensus_8822#0      GAGAAAAGGGAGATCCTGGACCTAAAGGTCTACCTGGCCCTAAAGGAGAACCCAGTTCAG 309
consensus_8822#2      ------------------------------------------------------------
consensus_8822#1      GAGAAAAGGGAGATCCTGGACCTAAAGGTCTGCCTGGCCCTAAAGGAGAACCCAGTTCAG 351
                                                                                  

consensus_8822#0      ATATGGAGTCAGGCGATGAAGGTCCCAAGGGCGAACCTGGTTTAATGGGATCAGAAGGAG 369
consensus_8822#2      ------------------------------------------------------------
consensus_8822#1      ATATGGAGTCAGGCGATGAAGGTCCCAAGGGCGAACCTGGTTTAATGGGATCAGAAGGAG 411
                                                                                  

consensus_8822#0      AAAAAGGTGGTGTTGGTGACGTTGCTGAATGCAATGAAGCCGGTTTACTTGGAGATCCTG 429
consensus_8822#2      ------------------------------------------------------------
consensus_8822#1      AAAAAGGTGGTGTTGGTGACGTTGCTGAATGCAATGAAGCCGGTTTACTTGGAGATCCTG 471
                                                                                  

consensus_8822#0      GACCTGATGGAGCAATGGGAACAATTGGCAATTCAGGTGATGATGGAGAACAAGGAGAAG 489
consensus_8822#2      --------------ATGGGAACAATTGGCTTTTCTTGTCATGATGGAGAATTAGGAGAAG 46
consensus_8822#1      GACCTGATGGAGCAATGGGAACAATTGGCAATTCAGGTGATGATGGAGAACAAGGAGAAG 531
                                    ***************  ***  ** ***********  ********

consensus_8822#0      ATGGTGATGTTGGACCGGAAGGAGAACCGGGTCCTGATGGTGAGCTAAATGAATATCTTA 549
consensus_8822#2      ATGGTGATGTTGGACCGGAAGGAGAACCGGGTCCTGATGGA------------------- 87
consensus_8822#1      ATGGTGATGTTGGACCGGAAGGAGAACCGGGTCCT------------------------- 566
                      ***********************************                         

consensus_8822#0      ACATANTTGTTGNGTCTACGTATTATAACTAGTCAAAAATATATCATAAAAATAATGGCA 609
consensus_8822#2      ------------------------------------------------------------
consensus_8822#1      ------------------------------------------------------------
                                                                                  

consensus_8822#0      CTAATCTTAGTTAAATATCTATTAAAAACCTGGGAACACTGGACGTTCG 658
consensus_8822#2      -------------------------------------------------
consensus_8822#1      -------------------------------------------------