cluster # 8824

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Schistosoma mansoni
cluster # 8824 cluster # 8824 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8824#0 length = 656 sequences # 6

consensus_8824#1 length = 150 sequences # 1

consensusID : consensus_8824#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 656
fasta sequence

                              [AAAAAGGGTAGAAGGAAAGAGATAGAGACCCGCCGCACATACACACACACACACGTGTATTATGAATATTATACAGTAACTATGCGTAAACACAATGACAACACTACCAATAATAATGATCATCCTAGTTTGAAC-ATGTACATACACACACATGTAGGGAATAAGTGATGTCATTCTACCATAGTTTACTTATAGAGAAGCAAAGAGACAAAAAAAATTAAAGGAGTAGAAATCATCAGAATCAGAAGGCAAATTAACAATTTGTCAATAAACAAACAAACAAACAAACAAATACACACACATACATATACACGCAACATGGATACTGGGAACTATGAAAGAAACAATACTTCTTTTAATTAGATCAGTTTGTTTTGTAACTAAGGCAATTATGAAAAT--AGAGAGAGAGAGAGAGAGAGAGAAAGAGAGGCNAAAGAGAGTAACAGTGTGATACTTTGGTAATAAAGTAAGTGAGGAATGATATACACATGCATAATTAACAAAAACTACAAGAATTTTACATTCTCATCATTAATAATAATAATCATTACCAACATCCATAAA-GGCAGTAATATTCGTAGGCAATGGTATTGAACAAAGTGGCCAAAG-AAAGTAAACAAAAGAAACCATATCAGAAATCACCCTACCCTACTTNG]

[+] EMBL CD189460             [AAAAAGGGTAGAAGGAAAGAGATAGAGACCCGCCGCACATACACACACACACACGTGTATTATGAATATTATACAGTAACTATGCGTAAACACAATGACAACACTACCAATAATAATGATCATCCTAGTTTGAAC ATGTACATACACACACATGTAGGGAATAAGTGATGTCATTCTACCATAGTTTACTTATAGAGAAGCAAAGAGACAAAAAAAATTAAAGGAGTAGAAATCATCAGAATCAGAAGGCAAATTAACAATTTGTCAATAAACAAACAAACAAACAAACAAATACACACACATACATATACACGCAACATGGATACTGGGAACTATGAAAGAAACAATACTTCTTTTAATTAGATCAGTTTGTTTTGTAACTAAGGCAATTATGAAAAT  AGAGAGAGAGAGAGAGAGAGAGAAAGAGAGGCNAAAGAGAGTAACAGTGTGATACTGTGGTAATAAAGTAAGTGAGGAATGATATACACATGCATAATTAACAAAAACTACAAGAATTTTACATTCTCATCATTAATAATAATAATCATTACCAACATCCATAAAGGGCAGT ATATTCGTACGCAATGGTATTGAACAAAGTGGCCAAAGAAAAGT AACAAAAGACACCATATCAGAAATCACCCTACCCTACTTNG]
[+] EMBL CD189464             [AAAAAGGGTAGAAGGAAAGAGATAGAGACCCGCCGCACATACACACACACACACGTGTATTATGAATATTATACAGTAACTATGCGTAAACACAATGACAACACTACCAATAATAATGATCATCCTAGTTTGAAC ATGTACATACACACACATGTAGGGAATAAGTGATGTCATTCTACCATAGTTTACTTATAGAGAAGCAAAGAGACAAAAAAAATTAAAGGAGTAGAAATCATCAGAATCAGAAGGCAAATTAACAATTTGTCAATAAACAAACAAACAAACAAACAAATACACACACATACATATACACGCAACATGGATACTGGGAACTATGAAAGAAACAATACTTCTTTTAATTAGATCAGTTTGTTTTGTAACTAAGGCAATTATGAAAAT  AGAGAGAGAGAGAGAGAGAGAGANAGAGAGGCNAAAGAGAGTAACAGTGTGATACTTTGGTAATAAAGTAAGTGAGGAATGATATACACATGCATAATTAACAAAAACTACAAGAATTTTACATTCTCATCATTAATAATAATAATCATTACCAACATCCATAGA GGCAGTAATATTCGTAGGCAATGGTATTGAACAAAGTGGCCANAG AAAGTAAACAAAAGAAACCATATCAGAAATCACCCTACCCTACcttg]
[+] EMBL CD094680             [                                            ACACACACACGTGTATTATGAATATTATACAGTAACTATGCGTAAACACAATGACAACACTACCAATAATAATGATCATCCTAGTTTGAAC ATGTACATACACACACATGTAGGGAATAAGTGATGTCATTCTACCATAGTTTACTTATAGAGAAGCAAAGAGACAAAAAAAATTAAAGGAGTAGAAATCATCAGAATCAGAAGGCAAATTAACAATTTGTCAATAAACAAACAAACAAACAAACAAATACACACACATACATATACACGCAACATGGATACTGGGAACTATGAAAGAAACAATACTTCTTTTAATTAGATCAGTTTGTTTTGTAACTAAGGCAATTATGAAAATAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGGCAAAAGAGAGTAACAGTGTGATACTTTGGTAATAAAGTAAGTGAGGAATGATATACACATGCATAATTAACAAAAACTACAAGAATTT                                                                                                                                            ]
[-] EMBL CD139645             [                                                                                                                ATAATGATCATCCTAG TTGAACAATGTACATACACACACATGTAGGGAATAAGTGATGTCATTCTACCATAGTTTACTTATAGAGAAGCAAAGAGACAAAAAAAATTAAAGGAGTAGAAATCATCAGAATCAGAAGGCAAATTAACAATTTGTCAATAAACAAACAAACAAACAAACAAATACACACACATACATATACACGCAACATGGATACTGGGAACTATGAAAGAAACAATACT                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD154213             [                                                                                                                                                                                                                                                                         TCAATAAACAAACAAACAAACAAACAAATACACACACATACATATACACGCAACATGGATACTGGGAACTATGAAAGAAACAATACTTCTTTTAATTAGATCAGTTTGTTTTGTAACTAAGGCAATTATGAAAATAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGGCAAAAGAGAGTAACAGTGTGATACTTTGGTAATAAAGTAAGTGAGGAATGATATACACATGCATAATTAACAAAAACTACAAGAATTTTACATTCTCATCATTAAT                                                                                                                          ]
[-] EMBL CD094567             [                                                                                                                                                                                                                                                                                                                                                                                                                         GAGAGAGAGAGAGAGGAAGAGAGGCCAAAGAGAGTAACAGTGTGATACTTTGGTAATAAAGTAAGTGAGGAATGTTATACACATGCATAATTAACAAAAACTACAAGAATTTTACATTCTCATCATTAATAATAATAATCATTACCAACATCCATAAA GGCAGTAATATTCGTAGGCAATGGTATTGAACAAAGTGGCCAAAG AAAGTAAACAAAAGAAACCATATCAGAAATCACCCTACCCTA     ]




>consensus_8824#0
AAAAAGGGTAGAAGGAAAGAGATAGAGACCCGCCGCACATACACACACACACACGTGTAT
TATGAATATTATACAGTAACTATGCGTAAACACAATGACAACACTACCAATAATAATGAT
CATCCTAGTTTGAACATGTACATACACACACATGTAGGGAATAAGTGATGTCATTCTACC
ATAGTTTACTTATAGAGAAGCAAAGAGACAAAAAAAATTAAAGGAGTAGAAATCATCAGA
ATCAGAAGGCAAATTAACAATTTGTCAATAAACAAACAAACAAACAAACAAATACACACA
CATACATATACACGCAACATGGATACTGGGAACTATGAAAGAAACAATACTTCTTTTAAT
TAGATCAGTTTGTTTTGTAACTAAGGCAATTATGAAAATAGAGAGAGAGAGAGAGAGAGA
GAAAGAGAGGCNAAAGAGAGTAACAGTGTGATACTTTGGTAATAAAGTAAGTGAGGAATG
ATATACACATGCATAATTAACAAAAACTACAAGAATTTTACATTCTCATCATTAATAATA
ATAATCATTACCAACATCCATAAAGGCAGTAATATTCGTAGGCAATGGTATTGAACAAAG
TGGCCAAAGAAAGTAAACAAAAGAAACCATATCAGAAATCACCCTACCCTACTTNG

consensusID : consensus_8824#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 150
fasta sequence

                              [CCCAGAACCTGAGATAGAGACCCGCCGCACATACACACACACACACGTGTATTATGAATATTATACAGTAACTATGCGTAAACACAATGACAACACTACCAATAATAATGATCATCCTAGTTTGAACATGTACATACACACACACTTGTA]

[+] EMBL CD179702             [CCCAGAACCTGAGATAGAGACCCGCCGCACATACACACACACACACGTGTATTATGAATATTATACAGTAACTATGCGTAAACACAATGACAACACTACCAATAATAATGATCATCCTAGTTTGAACATGTACATACACACACACTTGTA]




>consensus_8824#1
CCCAGAACCTGAGATAGAGACCCGCCGCACATACACACACACACACGTGTATTATGAATA
TTATACAGTAACTATGCGTAAACACAATGACAACACTACCAATAATAATGATCATCCTAG
TTTGAACATGTACATACACACACACTTGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8824#0      AAAAAGGGTAGAAGGAAAGAGATAGAGACCCGCCGCACATACACACACACACACGTGTAT 60
consensus_8824#1      --------CCCAGAACCTGAGATAGAGACCCGCCGCACATACACACACACACACGTGTAT 52
                                 *      ******************************************

consensus_8824#0      TATGAATATTATACAGTAACTATGCGTAAACACAATGACAACACTACCAATAATAATGAT 120
consensus_8824#1      TATGAATATTATACAGTAACTATGCGTAAACACAATGACAACACTACCAATAATAATGAT 112
                      ************************************************************

consensus_8824#0      CATCCTAGTTTGAACATGTACATACACACACATGTAGGGAATAAGTGATGTCATTCTACC 180
consensus_8824#1      CATCCTAGTTTGAACATGTACATACACACACACTTGTA---------------------- 150
                      ********************************  *                         

consensus_8824#0      ATAGTTTACTTATAGAGAAGCAAAGAGACAAAAAAAATTAAAGGAGTAGAAATCATCAGA 240
consensus_8824#1      ------------------------------------------------------------
                                                                                  

consensus_8824#0      ATCAGAAGGCAAATTAACAATTTGTCAATAAACAAACAAACAAACAAACAAATACACACA 300
consensus_8824#1      ------------------------------------------------------------
                                                                                  

consensus_8824#0      CATACATATACACGCAACATGGATACTGGGAACTATGAAAGAAACAATACTTCTTTTAAT 360
consensus_8824#1      ------------------------------------------------------------
                                                                                  

consensus_8824#0      TAGATCAGTTTGTTTTGTAACTAAGGCAATTATGAAAATAGAGAGAGAGAGAGAGAGAGA 420
consensus_8824#1      ------------------------------------------------------------
                                                                                  

consensus_8824#0      GAAAGAGAGGCNAAAGAGAGTAACAGTGTGATACTTTGGTAATAAAGTAAGTGAGGAATG 480
consensus_8824#1      ------------------------------------------------------------
                                                                                  

consensus_8824#0      ATATACACATGCATAATTAACAAAAACTACAAGAATTTTACATTCTCATCATTAATAATA 540
consensus_8824#1      ------------------------------------------------------------
                                                                                  

consensus_8824#0      ATAATCATTACCAACATCCATAAAGGCAGTAATATTCGTAGGCAATGGTATTGAACAAAG 600
consensus_8824#1      ------------------------------------------------------------
                                                                                  

consensus_8824#0      TGGCCAAAGAAAGTAAACAAAAGAAACCATATCAGAAATCACCCTACCCTACTTNG 656
consensus_8824#1      --------------------------------------------------------