cluster # 8825

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Schistosoma mansoni
cluster # 8825 cluster # 8825 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8825#0 length = 659 sequences # 4

consensus_8825#1 length = 380 sequences # 1
consensus_8825#2 length = 365 sequences # 2

consensusID : consensus_8825#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 659
fasta sequence

                              [GCATTTTGATTCAAAATGTCCTCGGATGCTCAGAATTATTCCGGGGATGAAGGAGAGGAGTACAATAGTCCCTACAGGAAAAATCCACCT-CGGGTTCGGAAGAAAAACCGGTACTATAGTGATGATTATTACGAGCCTCCAACAAACTACAAACCCCGATTACT-GCATTCCCCAAGACCTTCTGTACAACCAGAAGAAATGTCACCAAAAGTGCGAAAGCCTG-CTAAACTGCATAAATCAATGATTGGGCATATGCCCTGGCGTACACAAATGCATCATCCTGAAAGGCGAATGGCACAAACAAATGCCGTCCGTCTGCGGAATGTTCTGAAGCTACCTAAGGCACATAAATGGGTGTTCTACGAGTGGTTCTACTCCAATTTGGACAGACCTTTATTACTAGGCGAAAATGATTTCCGCATTTGTCTTCGTGAAAGCTTCCCAAACGTCAAAACCCGCCGTTTATCTCGTGCCCATTGGTCATTATTACGTCGTTTGATGGGAAAGCCACGTCGTTGCTCTACAGCTTTCTTCGACGAAGAACGTCGTTCCCTTAATGAAAAGCGTGAGAAGATTCGCACCTTGCAGGCTACTCGGTCAGTGCAGCTAGAGTTCTTAAGAGATCCTCCGGACGATATGCACGTNCCAATGCCCTTAAT]

[+] EMBL BF936110             [GCATTTTGATTCAAAATGTCCTCGGATGCTCAGAATTATTCCGGGGATGAAGGAGAGGAGTACAATAGTCCCTACAGGAAAAATCCACCT CGGGTTCGGAAGAAAAACCGGTACTATAGTGATGATTATTACGAGCCTCCAACAAACTACAAACCCCGATTACT GCATTCCCCAAGACCTTCTGTACAACCAGAAGAAATGTCACCAAAAGTGCGAAAGCCTG CTAAACTGCATAAATCAATGATTGGGCATATGCCCTGGCGTACACAAATGCATCATCCTGAAAGGCGAATGGCACAAACAAATGCCGTCCGTCTGCGGAATGTTCTGAAGCTACCTAAGGCACATAAATGGGTGTTCTACGAGTGGTTCTACTCCAATTTGGACAGACCTTTATTACTAGGCGAAAATGATTTCCGCATTTGTCTTCGTGAAAGCTTCCCAAACGTCAAAACCCGCCGTTTATCTCGTGCCCATTGGTCATTATTACGTC                                                                                                                                                                      ]
[+] EMBL BE505103             [                                                    GAGAGGAGTACAATAGTCCCTACAGGAAAAATCCACCTCCGGGTTCGGAAGAAAAACCGGTACTATAGTGATGATTATTACGAGCCTCCAACAAACTACAAACCCCGATTACTGGCATTCCCCAAGACCTTCTGTACAACNAGAAGAAATGTCACCAAAAGTGCGAAAGCCTGCCTAAACTGgtatg                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AI976519             [                                                                                             GGTTCGGAAGAAAAACCGGTACTATAGTGATGATTATTACGAGCCTCCAACAAACTACAAACCCCGATTACT GCATTCCCCAAGACCTTCTGTACAACCAGAAGAAATGTCACCAAAAGTGCGAAAGCCTG CTAAACTGCATAAATCAATGATTGGGCATATGCCCTGGCGTACACAAATGCATCATCCTGAAAGGCGAATGGCACAAACAAATGCCGTCCGTCTGCGGAATGTTCTGAAGCTACCTAAGGCACATAAATGGGTGTTCTACGAGTGGTTCTACTCCAATTTGGACAGACCTTTATTACTAGGCGAAAATGATTTCCGCATTTGTCTTCGTGAAAGCTTCCCAAACGTCAAAACCCGCCGTTTATCTCGTGCCCATTGGTCATTATTACGTCGTTTGATGGGAAAGCCACGTCGTTGCTCTACAGCTTTCTTCGACGAAGAACGTCGTTCCCTTAATGAAAAGCGTGAGAAGATTCGCACCTTGCAGGCTACTCGGTCAGTGCAGCTAGAGTTCTTAAGAGATCCTCCGGACGATATGCACGTNC             ]
[-] EMBL CD132106             [                                                                                                                                                                                                                                                                                                                                           TGAAGCTACCTAAGGCACATAAATGGGTGTTCTACGAGTGGTTCTACTCCAATTGGGACAGACCTTTATTACTAGGCGAAAATGATTTCCGCATTTGTCTTCGTGAAAGCTTCCCAAACGTCAAAACCCGCCGTTTATCTCGTGCCCATTGGTCATTATTACGTCGTTTGATGGGAAAGCCACGTCGTTGCTCTACAGCTTTCTTCGACGAAGAACGTCGTTCCCTTAATGAAAAGCGTGAGAAGATTCGCACCTTGCAGGCTACTCGGTCAGTGCAGCTAGAGTTCTTAAGAGATCTCCCGGACGATATGCACGTCCCAATGCCCTTAAT]




>consensus_8825#0
GCATTTTGATTCAAAATGTCCTCGGATGCTCAGAATTATTCCGGGGATGAAGGAGAGGAG
TACAATAGTCCCTACAGGAAAAATCCACCTCGGGTTCGGAAGAAAAACCGGTACTATAGT
GATGATTATTACGAGCCTCCAACAAACTACAAACCCCGATTACTGCATTCCCCAAGACCT
TCTGTACAACCAGAAGAAATGTCACCAAAAGTGCGAAAGCCTGCTAAACTGCATAAATCA
ATGATTGGGCATATGCCCTGGCGTACACAAATGCATCATCCTGAAAGGCGAATGGCACAA
ACAAATGCCGTCCGTCTGCGGAATGTTCTGAAGCTACCTAAGGCACATAAATGGGTGTTC
TACGAGTGGTTCTACTCCAATTTGGACAGACCTTTATTACTAGGCGAAAATGATTTCCGC
ATTTGTCTTCGTGAAAGCTTCCCAAACGTCAAAACCCGCCGTTTATCTCGTGCCCATTGG
TCATTATTACGTCGTTTGATGGGAAAGCCACGTCGTTGCTCTACAGCTTTCTTCGACGAA
GAACGTCGTTCCCTTAATGAAAAGCGTGAGAAGATTCGCACCTTGCAGGCTACTCGGTCA
GTGCAGCTAGAGTTCTTAAGAGATCCTCCGGACGATATGCACGTNCCAATGCCCTTAAT

consensusID : consensus_8825#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [AGTCCCTACAGGAAAAATCCACCTCGGGTTCGGAAGAAAAACCGGTACTATAGTGATGATTATTACGAGCCTCCAACAAACTACAAACCCCGATTACTGCATTCCCCAAGACCTTCTGTACAACCAGAAGAAATGTTACCAAAAGTGCGAAAGCCTGCTAAACTGCATAAATCAATGATTGGGCATATGCCCTGGCGTACACAAATGCATCATCCTGAAAGGCGAATGGCACAAACAAATGCCGTCCGTCTGCGGAATGTTCTGAAGCTACCTAAGGCACATAAATGGGTGTTCTACGAGTGGTTCTACTCCAATTTGGACAGGTAATGTAATCCTCCATATTATTTTTCCAGACCTTTATTACTAGGCGAAAATGATTT]

[+] EMBL CD201193             [AGTCCCTACAGGAAAAATCCACCTCGGGTTCGGAAGAAAAACCGGTACTATAGTGATGATTATTACGAGCCTCCAACAAACTACAAACCCCGATTACTGCATTCCCCAAGACCTTCTGTACAACCAGAAGAAATGTTACCAAAAGTGCGAAAGCCTGCTAAACTGCATAAATCAATGATTGGGCATATGCCCTGGCGTACACAAATGCATCATCCTGAAAGGCGAATGGCACAAACAAATGCCGTCCGTCTGCGGAATGTTCTGAAGCTACCTAAGGCACATAAATGGGTGTTCTACGAGTGGTTCTACTCCAATTTGGACAGGTAATGTAATCCTCCATATTATTTTTCCAGACCTTTATTACTAGGCGAAAATGATTT]




>consensus_8825#1
AGTCCCTACAGGAAAAATCCACCTCGGGTTCGGAAGAAAAACCGGTACTATAGTGATGAT
TATTACGAGCCTCCAACAAACTACAAACCCCGATTACTGCATTCCCCAAGACCTTCTGTA
CAACCAGAAGAAATGTTACCAAAAGTGCGAAAGCCTGCTAAACTGCATAAATCAATGATT
GGGCATATGCCCTGGCGTACACAAATGCATCATCCTGAAAGGCGAATGGCACAAACAAAT
GCCGTCCGTCTGCGGAATGTTCTGAAGCTACCTAAGGCACATAAATGGGTGTTCTACGAG
TGGTTCTACTCCAATTTGGACAGGTAATGTAATCCTCCATATTATTTTTCCAGACCTTTA
TTACTAGGCGAAAATGATTT

consensusID : consensus_8825#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 365
fasta sequence

                              [AGAGATCTCCCGGACGATATGCACGTCCCAATGCCCTTAATAATAGGGACCAAGATAACAGCTAGGGTTCGCTATCCAACGGATGGTTTGTACACTGGAAAAGTTGATGCTATCGGTGCACTAAGACATTGCTATCGTGTCACTTTCGATAAGCCAGCTCTTGGCACTCGGTCAATACCTGACTATGAAGTCCTGAGTATTTTACCCCAAGAAACTATACCCTTGTCTGCATACAAAACCCAACACAAAGCCAGCCGTAATCTCTTCATGAGTCCCGCTCGACTTCTAGCGCAATCTGCTTTACAGGGCAAACGTCATCATATGCATCATCATAAATTTGGACATGGAATGGGACAAGGTGGTGG]

[-] EMBL CD136212             [AGAGATCTCCCGGACGATATGCACGTCCCAATGCCCTTAATAATAGGGACCAAGATAACAGCTAGGGTTCGCTATCCAACGGATGGTTTGTACACTGGAAAAGTTGATGCTATCGGTGCACTAAGACATTGCTATCGTGTCACTTTCGATAAGCCAGCTCTTGGCACTCGGTCAATACCTGACTATGAAGTCCTGAGTATTTTACCCCAAGAAACTATACCCTTGTCTGCATACAAAACCCAACACAAA                                                                                                                    ]
[+] EMBL CD077900             [                                                    tgatgcgAGCTAGGGTTCGCTATCCAACGNATGGTTTGTACACTGGAAAAGTTGATGCTATCGATGCACTAAGACATTGCTATCGTGTCACTTTCGATAAGCCAGCTCTTGGCACTCGGCCAATACCTGACTATGAAGTCCTGAGTATTTTACCCCAAGAAACTATACCCTTGTCTGCATACAAAACCCAACACAAAGCCAGCCGTAATCTCTTCATGAGTCCCGCTCGACTTCTAGCGCAATCTGCTTTACAGGGCAAACGTCATCATATGCATCATCATAAATTTGGACATGGAATGGGACAAGGTGGTGG]




>consensus_8825#2
AGAGATCTCCCGGACGATATGCACGTCCCAATGCCCTTAATAATAGGGACCAAGATAACA
GCTAGGGTTCGCTATCCAACGGATGGTTTGTACACTGGAAAAGTTGATGCTATCGGTGCA
CTAAGACATTGCTATCGTGTCACTTTCGATAAGCCAGCTCTTGGCACTCGGTCAATACCT
GACTATGAAGTCCTGAGTATTTTACCCCAAGAAACTATACCCTTGTCTGCATACAAAACC
CAACACAAAGCCAGCCGTAATCTCTTCATGAGTCCCGCTCGACTTCTAGCGCAATCTGCT
TTACAGGGCAAACGTCATCATATGCATCATCATAAATTTGGACATGGAATGGGACAAGGT
GGTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8825#0      GCATTTTGATTCAAAATGTCCTCGGATGCTCAGAATTATTCCGGGGATGAAGGAGAGGAG 60
consensus_8825#1      ------------------------------------------------------------
consensus_8825#2      ------------------------------------------------------------
                                                                                  

consensus_8825#0      TACAATAGTCCCTACAGGAAAAATCCACCTCGGGTTCGGAAGAAAAACCGGTACTATAGT 120
consensus_8825#1      ------AGTCCCTACAGGAAAAATCCACCTCGGGTTCGGAAGAAAAACCGGTACTATAGT 54
consensus_8825#2      ------------------AGAGATCTCCC--------GGACGATATGCACGTCCCAATGC 34
                                        * * ***  **        *** ** *  *  ** * *  * 

consensus_8825#0      GATGATTATTACGAGCCTCCAACAAACTACAAACCCCGATTACTGCATTCCCCAAGACCT 180
consensus_8825#1      GATGATTATTACGAGCCTCCAACAAACTACAAACCCCGATTACTGCATTCCCCAAGACCT 114
consensus_8825#2      CCTTAATAATAGGGACC------AAGATAACAGCTAGGGTT--CGCTATCCAACGGATGG 86
                        * * ** ** *  **      **  **  * *   * **   **  ***    **   

consensus_8825#0      TCTGTACAACCAGAAGAAATGTCACCAAAAGTGCG---AAAGCCTGCTAAACTGCATAAA 237
consensus_8825#1      TCTGTACAACCAGAAGAAATGTTACCAAAAGTGCG---AAAGCCTGCTAAACTGCATAAA 171
consensus_8825#2      TTTGTACA-CTGGAAAAGTTGATGCTATCGGTGCACTAAGACATTGCTATCGTGTCACTT 145
                      * ****** *  *** *  **   * *   ****    * *   *****   **      

consensus_8825#0      TCAATGATTGGGCATATGCC--CTGGC--GTACACAAATGCATCATCCTGAAAGGCGAAT 293
consensus_8825#1      TCAATGATTGGGCATATGCC--CTGGC--GTACACAAATGCATCATCCTGAAAGGCGAAT 227
consensus_8825#2      TCGATAAGCCAGCTCTTGGCACTCGGTCAATACCTGACTATGAAGTCCTGAGTATTTTAC 205
                      ** ** *    **   ** *    **    ***   * *      ******       * 

consensus_8825#0      GGCACAAACAAATGCCGTCCGTCTGCGGAATGTTCTGAAGCTACCTAAGGCACATAAATG 353
consensus_8825#1      GGCACAAACAAATGCCGTCCGTCTGCGGAATGTTCTGAAGCTACCTAAGGCACATAAATG 287
consensus_8825#2      CCCAAGAAACTATACC-CTTGTCTGCA-----TACAAAACCCAACACAAAGCCAGCCGTA 259
                        **  **   ** **    ******      * *  ** * * *  *    **    * 

consensus_8825#0      GGTGTTCTACGAGTGGTTCTACTCCAATTTGGACAGACCTT-TATTACTAGGCGAAAATG 412
consensus_8825#1      GGTGTTCTACGAGTGGTTCTACTCCAATTTGGACAGGTAATGTAATCCTCCATATTATTT 347
consensus_8825#2      ATCTCTTCATGAG---TCCCGCTCGACTTCTAGCGCAATCTGCTTTACAGGGCAAACGTC 316
                           *  * ***   * *  *** * **    *      *    * *          * 

consensus_8825#0      ATTTCCGCATTTGT--CTTCGTGAAAGCTTCCCAAACGTCAAAACCCGCCGTTTATCTCG 470
consensus_8825#1      TTCCAGACCTTTATTACTAGGCGAAAATGATTT--------------------------- 380
consensus_8825#2      AT-----CATATGCATCATCAT-AAATTTGGACATGGAATGGGACAAGGTGGTGG----- 365
                       *     * * *    *      ***                                  

consensus_8825#0      TGCCCATTGGTCATTATTACGTCGTTTGATGGGAAAGCCACGTCGTTGCTCTACAGCTTT 530
consensus_8825#1      ------------------------------------------------------------
consensus_8825#2      ------------------------------------------------------------
                                                                                  

consensus_8825#0      CTTCGACGAAGAACGTCGTTCCCTTAATGAAAAGCGTGAGAAGATTCGCACCTTGCAGGC 590
consensus_8825#1      ------------------------------------------------------------
consensus_8825#2      ------------------------------------------------------------
                                                                                  

consensus_8825#0      TACTCGGTCAGTGCAGCTAGAGTTCTTAAGAGATCCTCCGGACGATATGCACGTNCCAAT 650
consensus_8825#1      ------------------------------------------------------------
consensus_8825#2      ------------------------------------------------------------
                                                                                  

consensus_8825#0      GCCCTTAAT 659
consensus_8825#1      ---------
consensus_8825#2      ---------