cluster # 8827

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Schistosoma mansoni
cluster # 8827 cluster # 8827 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8827#0 length = 645 sequences # 4

consensus_8827#1 length = 511 sequences # 3

consensusID : consensus_8827#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 645
fasta sequence

                              [CGGTAGCCGAAATCTGTGTTTTCTGTTGTGCATGTGAATCATGGATGTTTCATAATATTTTTTTCAGTTCGATAAGCTTTTTTAAAATCAAGATTCTGTTTCTGTCTTCTATTTTTTTAGGTTGCTGTATCCCGACCTTTCGACGTTGGACGTCTTGATGAACTTGAAAAACTTGTTACCAGTCTTGTTAGTCGCATATCAGATCTGGAATCACGGATAAGCACTATGAAGTTGAGTAATGATTCTCATGATAAAGTTGGAGAAAAATCTGATGCAGAGCTTGATCTTTTTGCTTCAGACAGCGAGGAGGATAGAGAAGCTGAGCGTATCAGGAGTGAGAGAGAAGCCATGTACCTTGCAAAAAAAGCTCTAAAGCCCGTTGTGGTGGCAAAGTCAAATATCACACTCGAAGTGAAACCATGGGATGATGAAGTAAATATGGAAGAACTTACCTCTATGGTGAAAGGTATTAAAGCAGATGGCCTTTTGTGGGGTGCATCCAAACTAGTGCCTATCGCTTTTGGTATAAAAAAGCTCCAAATCTGCTGTGTCGTTGAAGATGACAAGGTTGGAACTGACTTCCTCGAAGAATCTATAAAAGAGTTTACGGAACATGTCCAATCTGTAGATATTGTATCATTCAAC]

[+] EMBL CD112632             [CGGTAGCCGAAATCTGTGTTTTCTGTTGTGCATGTGAATCATGGATGTTTCATAATATTTTTTTCAGTTCGATAAGCTTTTTTAAAATCAAGATTCTGTTTCTGTCTTCTATTTTTTTAGGTTGCTGTATCCCGACCTTTCGACGTTGGACGTCTTGATGAACTTGAAAAACTTGTTACCAGTCTTGTTAGTCGCATATCAGATCTGGAATCACGGATAAGCACTATGAAGTTGAGTAATGATTCTCATGATAAAGTTGGAGAAAAATCTGATGCAGAGCTTGATCTTTTTGCTTCAGACAGCGAGGAGGATAGAGAAGCTGAGCGTATCAGGAGTGAGAGAGAAGCCATGTACCTTGCAAAAAAAGC                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD137881             [                                                                                                                                                               GAACTTGAAAAACTTGTTACCAGTCTTGTTAGTCGCATATCAGATCTGGAATCACGGATAAGCACTATGAAGTTGAGTAATGATTCTCATGATAAAGTTGGAGAAAAATCTGATGCAGAGCTTGATCTTTTTGCTTCAGACAGCGAGGAGGATAGAGAAGCTGAGCGTATCAGGAGTGAGAGAGAAGCCATGTACCTTGCAAAAAAAGCTCTAAAGCCCGTTGTGGTGGCAAAGTCAAATATCACACTCGAAGTGAAACCATGGGATGATGAAGTAAATATGGAAGAACTTACCTCTATGGTGAAAGGTATTAAAGCAGATGGCCTTTTGTGGGGTGCATCCAAACTAGTGCCTATCGCTTTTGGTATAAAAAAGCTCCAAATCTGCTGTGTCGTTGAAGATGACAAGGTTGGGACTGACTTCCTCGAAGAATCTATAAAAGAGTTTACGGAACATGTCC                          ]
[-] EMBL CD161549             [                                                                                                                                                                                                                                                                                                                   AGGATAGAGAAGCTGAGCGTATCAGGAGTGAGAGAGAAGCCATGTACCTTGCAAAAAAAGCTCTAAAGCCCGTTGTGGTGGCAAAGTCAAATATCACACTCGAAGTGAAACCATGGGATGATGAAGTAAATATGGAAGAACTTACCTCTATGGTGAAAGGTATTAAAGCAGATGGCCTTTTGTGGGGTGCATCCAAACTAGTGCCTATCGCTTTTGGTATAAAAAAGCTCCAAATCTGCTGTGTCGTTGAAGATGACAAGGTTGGAACTGACTTCCTCGAAGAATCTATAAAAGAGTTTACGGAACATGTCCAATCTGTAGATATTGTATCATTCAAC]
[-] EMBL CD161565             [                                                                                                                                                                                                                                                                                                                   AGGATAGAGAAGCTGAGCGTATCAGGAGTGAGAGAGAAGCCATGTACCTTGCAAAAAAAGCTCTAAAGCCCGTTGTGGTGGCAAAGTCAAATATCACACTCGAAGTGAAACCATGGGATGATGAAGTAAATATGGAAGAACTTACCTCTATGGTGAAAGGTATTAAAGCAGATGGCCTTTTGTGGGGTGCATCCAAACTAGTGCCTATCGCTTTTGGTATAAAAAAGCTCCAAATCTGCTGTGTCGTTGAAGATGACAAGGTTGGAACTGACTTCCTCGAAGAATCTATAAAAGAGTTTACGGAACATGTCCAATCTGTAGATATTGTATCATTCAcc]




>consensus_8827#0
CGGTAGCCGAAATCTGTGTTTTCTGTTGTGCATGTGAATCATGGATGTTTCATAATATTT
TTTTCAGTTCGATAAGCTTTTTTAAAATCAAGATTCTGTTTCTGTCTTCTATTTTTTTAG
GTTGCTGTATCCCGACCTTTCGACGTTGGACGTCTTGATGAACTTGAAAAACTTGTTACC
AGTCTTGTTAGTCGCATATCAGATCTGGAATCACGGATAAGCACTATGAAGTTGAGTAAT
GATTCTCATGATAAAGTTGGAGAAAAATCTGATGCAGAGCTTGATCTTTTTGCTTCAGAC
AGCGAGGAGGATAGAGAAGCTGAGCGTATCAGGAGTGAGAGAGAAGCCATGTACCTTGCA
AAAAAAGCTCTAAAGCCCGTTGTGGTGGCAAAGTCAAATATCACACTCGAAGTGAAACCA
TGGGATGATGAAGTAAATATGGAAGAACTTACCTCTATGGTGAAAGGTATTAAAGCAGAT
GGCCTTTTGTGGGGTGCATCCAAACTAGTGCCTATCGCTTTTGGTATAAAAAAGCTCCAA
ATCTGCTGTGTCGTTGAAGATGACAAGGTTGGAACTGACTTCCTCGAAGAATCTATAAAA
GAGTTTACGGAACATGTCCAATCTGTAGATATTGTATCATTCAAC

consensusID : consensus_8827#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 511
fasta sequence

                              [GTGGTCGAGATGGAGGCAGGTCTACTTGTGAGCGCACAGACACTTCAATTTCCTGACTATCCGGATATTGAGAAAGCTTATGTATCTCATCTGTCTTCATCTGCTCAATCGAAAGCTCCAGAAACACTGAAAACGGGGTCTTTGACACAAGAAATTCAGAAAGCTAGAGAGCATATCAAAACATCCTTGGATCGCGTTGCTGTATCCCGACCTTTCGACGTTGGACGTCTTGATGAACTTGAAAAACTTGTTACCAGTCTTGTTAGTCGCATATCAGATCTGGAATCACGGGAT-AGCACTATGAAGTTGAGTAATGATTCTCATGGTAAAGTTGGAGAAAAATCTGATGCAGAGCTTGATCTTTTTGCTTCAGACAGCGAGGAGGATAGAGAAGCTGAGCGTATCAGGAGTGAGAGAGAAGCCATGTACCTTGCAAAAAAAGCTCCAAATCTGCTGTGTCGTTGAAGATGACAAGGTTGGAACTGACTTCCTCGAAGAGTCTATAAAAGAG]

[+] EMBL CD078138             [GTGGTCGAGATGGAGGCAGGTCTACTTGTGAGCGCACAGACACTTCAATTTCCTGACTATCCGGATATTGAGAAAGCTTATGTATCTCATCTGTCTTCATCTGCTCAATCGAAAGCTCCAGAAACACTGAAAACGGGGTCTTTGACACAAGAAATTCAGAAAGCTAGAGAGCATATCAAAACATCCTTGGATCGCGTTGCTGTATCCCGACCTTTCGACGTTGGACGTCTTGATGAACTTGAAAAACTTGTTACCAGTCTTGTTAGTCGCATATCAGATCTGGAATCACGGGAT AGCACTATGAAGTTGAGTAA                                                                                                                                                                                                     ]
[+] EMBL CD191572             [   GTCGAGATGGAGGCAGGTCTACTTGTGAGCGCACAGACACTTCAATTTCCTGACTATCCGGATATTGAGAAAGCTTATGTATCTCATCTGTCTTCATCCGCTCAATCGAAAGCTCCAGAAACACTGAAAACGGGGTCTTTGACACAAGAAATTCAGAAAGCTAGAGAGCATATCAAAACATCCTTGGATCGCGTTGCTGTATCCCGACCc                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD154301             [                                                                                                                                                                                                                                          GAACTTGAAAAACTTGTTACCAGTCTTGTTAGTCGCATATCAGATCTGGAATCAC GGATAAGCACTATGAAGTTGAGTAATGATTCTCATGGTAAAGTTGGAGAAAAATCTGATGCAGAGCTTGATCTTTTTGCTTCAGACAGCGAGGAGGATAGAGAAGCTGAGCGTATCAGGAGTGAGAGAGAAGCCATGTACCTTGCAAAAAAAGCTCCAAATCTGCTGTGTCGTTGAAGATGACAAGGTTGGAACTGACTTCCTCGAAGAGTCTATAAAAGAG]




>consensus_8827#1
GTGGTCGAGATGGAGGCAGGTCTACTTGTGAGCGCACAGACACTTCAATTTCCTGACTAT
CCGGATATTGAGAAAGCTTATGTATCTCATCTGTCTTCATCTGCTCAATCGAAAGCTCCA
GAAACACTGAAAACGGGGTCTTTGACACAAGAAATTCAGAAAGCTAGAGAGCATATCAAA
ACATCCTTGGATCGCGTTGCTGTATCCCGACCTTTCGACGTTGGACGTCTTGATGAACTT
GAAAAACTTGTTACCAGTCTTGTTAGTCGCATATCAGATCTGGAATCACGGGATAGCACT
ATGAAGTTGAGTAATGATTCTCATGGTAAAGTTGGAGAAAAATCTGATGCAGAGCTTGAT
CTTTTTGCTTCAGACAGCGAGGAGGATAGAGAAGCTGAGCGTATCAGGAGTGAGAGAGAA
GCCATGTACCTTGCAAAAAAAGCTCCAAATCTGCTGTGTCGTTGAAGATGACAAGGTTGG
AACTGACTTCCTCGAAGAGTCTATAAAAGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8827#0      ------------------------------------------------------------
consensus_8827#1      GTGGTCGAGATGGAGGCAGGTCTACTTGTGAGCGCACAGACACTTCAATTTCCTGACTAT 60
                                                                                  

consensus_8827#0      ----CGGTAGCCGAAATCTGTGTTTTCTGT---TGTGCATGTGAATCAT-GGATGTTTCA 52
consensus_8827#1      CCGGATATTGAGAAAGCTTATGTATCTCATCTGTCTTCATCTGCTCAATCGAAAGCTCCA 120
                             * *   **   * *** *    *   * * *** **    ** * * * * **

consensus_8827#0      TAA-TATTTTTTTCAG----TTCGATA--AGCTTTTTTAAAATCAAGATTCTGTTTCTGT 105
consensus_8827#1      GAAACACTGAAAACGGGGTCTTTGACACAAGAAATTCAGAAAGCTAGAGAGCATATCAAA 180
                       **  * *     * *    ** ** *  **   **   *** * ***     * **   

consensus_8827#0      CTTCTATTTTTTTAGGTTGCTGTATCCCGACCTTTCGACGTTGGACGTCTTGATGAACTT 165
consensus_8827#1      ACATCCTTGGATCGCGTTGCTGTATCCCGACCTTTCGACGTTGGACGTCTTGATGAACTT 240
                            **   *   *********************************************

consensus_8827#0      GAAAAACTTGTTACCAGTCTTGTTAGTCGCATATCAGATCTGGAATCACGGATAAGCACT 225
consensus_8827#1      GAAAAACTTGTTACCAGTCTTGTTAGTCGCATATCAGATCTGGAATCACGGGATAGCACT 300
                      ***************************************************   ******

consensus_8827#0      ATGAAGTTGAGTAATGATTCTCATGATAAAGTTGGAGAAAAATCTGATGCAGAGCTTGAT 285
consensus_8827#1      ATGAAGTTGAGTAATGATTCTCATGGTAAAGTTGGAGAAAAATCTGATGCAGAGCTTGAT 360
                      ************************* **********************************

consensus_8827#0      CTTTTTGCTTCAGACAGCGAGGAGGATAGAGAAGCTGAGCGTATCAGGAGTGAGAGAGAA 345
consensus_8827#1      CTTTTTGCTTCAGACAGCGAGGAGGATAGAGAAGCTGAGCGTATCAGGAGTGAGAGAGAA 420
                      ************************************************************

consensus_8827#0      GCCATGTACCTTGCAAAAAAAGCTCTAAAGCCCGTTGTGGTGGCAAAGTCAAATATCACA 405
consensus_8827#1      GCCATGTACCTTGCAAAAAAAGCTCCAAA-TCTGCTGTGTCGTTGAAGATGA---CAAGG 476
                      ************************* ***  * * ****  *   ***   *     *  

consensus_8827#0      CTCGAAGTGAAACCATGGGATGATGAAGTAAATATGGAAGAACTTACCTCTATGGTGAAA 465
consensus_8827#1      TTGGAACTGACTTCCTCGAAGAGTCTATAAAAGAG------------------------- 511
                       * *** ***   * * * *   *  *  *** *                          

consensus_8827#0      GGTATTAAAGCAGATGGCCTTTTGTGGGGTGCATCCAAACTAGTGCCTATCGCTTTTGGT 525
consensus_8827#1      ------------------------------------------------------------
                                                                                  

consensus_8827#0      ATAAAAAAGCTCCAAATCTGCTGTGTCGTTGAAGATGACAAGGTTGGAACTGACTTCCTC 585
consensus_8827#1      ------------------------------------------------------------
                                                                                  

consensus_8827#0      GAAGAATCTATAAAAGAGTTTACGGAACATGTCCAATCTGTAGATATTGTATCATTCAAC 645
consensus_8827#1      ------------------------------------------------------------