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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8830#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 855 fasta sequence
[AAGGTAACGAGTTGGATAATAGTTTCGAAGCGAATGATGAAGAAAATGATGGAAATGATGAACCTAAACCGCTTGCTCAGCGTCTTGGTGTTTCTGAAAAAACAGATATACAGAAGACAGCTACTACGCGTGGACGTGGTAAAGGAAGAACTGTCCC-AG-AAGTCGTCCAAAGCTTCCGAAACCATCTAGTCCAAATAATAGTCCTATTAAACGTAAAAATATGGGTGGAAATGCCAAACGTAAACGGTCTAGTCGTATGCCATGGGAGTCTGGCTCTGACACTGGAGACTCAGCAAGTCATGCCTCTATTGATAGTGATAATGAATACGTTTCCCCAATTTCTGGTGGACCTGCTGTAGATCGTGTACGACGTGAAAAAGCTGCAGCAACAAAATATGTTTTCGATGATGACAGTAGTAGTAATGAGGAAGATAATGAACGAGAGGAGAACTTTAAAGTTGTTGATCATGGACAAGGAAATAAAGAGATTGATATACCGATTGTTTCAGAAATTCAAGACACTAAGTCATCAATCCCATCAAGTAGCAGTGGTGGTGGTGTATCTGTAAAGACTGATTCCGGGTCAACATCTCGTGGTGCTTCTGCTATTGTATCAGGTCGTGGACGTGGTCGTGGTGGCAAAGGACGGCAGTTTTCAGCTCCACCTAAATCACAACCTAGTATCAAATCAATGTTTCCTTCTCAGAAGAAAACCACAGTAAACATTTCAACGGACGATGATTCTAATGATGCCACAAGTACAACTACTCAAAAAGAGCCTAGAGTGATTTCTCGACGTACTGTAACGAATCGTGCTCGATACGTGTTTGATGATGATGAAGATGACGATCTAGC]
[-] EMBL CD162971 [AAGGTAACGAGTTGGATAATAGTTTCGAAGCGAATGATGAAGAAAATGATGGAAATGATGAACCTAAACCGCTTGCTCAGCGTCTTGGTGTTTCTGAAAAAACAGATATACAGAAGACAGCTACTACGCGTGGACGTGGTAAAGGAAGAACTGTCCC AGCAAGTCGTCCAAAGCTTCCGAAACCATCTAGTCCAAATAATAGTCCTATTAAACGTAAAAATATGGGTGGAAATGCCAAACGTAAACGGTCTAGTCGTATGCCATGGGAGTCTGGCTCTGACACTGGAGACTCAGCAAGTCATGCCTCTATTGATAGTGATAATGAATACGTTT ]
[+] EMBL CD064473 [ GACAGCTACTACGCGTGGACGTGGTACAGGAAGACCTGTCCCAAC AAGTCGTCCAAAGCTTCCGAAACCATCTAGTCCAACTAATAGTCCTATTACACGTAAAAATATGGGTGGAAATGCCAAACGTAAACGGTCTAGTCGTATGCCATGGGAGTCTGGCTCTGACACTGGAGACTCAGCAAGTCATGCCTCTATTGATAGTGATAAT ]
[+] EMBL CD154541 [ AGAACTGTCCCAAC AAGTCGTCCAAAGCTTCCGAAACCATCTAGTCCAAATAATAGTCCTATTAAACGTAAAAATATGGGTGGAAATGCCAAACGTAAACGGTCTAGTCGTATGCCATGGGAGTCTGGCTCTGACACTGGAGACTCAGCAAGTCATGCCTCTATTGATAGTGATAATGAATACGTTTCCCCAATTTCTGGTGGACCTGCTGTAGATCGTGTACGACGTGAAAAAGCTGCAGCAACAAAATATGTTTTCGATGATGACAGTAGTAGTAATGAGGAAGATAATGAACGAGAGGAGAACTTTAAAGTTGTTGATCATGGACAAGGAAATAAAGAGATTGATATACCGATTGTTTCAGAAATTCAAGACACTAAGTCATCAATCCCATCAAGTAGCAGTGGTGGTGGTGTATCTGTAAAGACTGATTCCGGGTCAACATCTCGTGGTGCTTCTGCTATTGTATCAGGTCGTGGACGTGGTCGTGGTGGCAAAGGACGGCAGTTTTCAGCTCCACCTAAATCACAACCTAGTATCAAATCAATGTTTCCTTCTCAGAAGAAAA ]
[+] EMBL CD082503 [ cgagCC AG AATTCG CCGAGG CCGAAACC TCTAGTCC AATAATAGTCCTATTAAACGTAAAAATATGGGTGGAAATGCCAAACGTAAACGGTCTAGTCGTATGCCATGGGAGTCTGGCTCTGACACTGGAGACTCAGCAAGTCATGCCTCTATTGATAGTGATAATGAATACGTTTCCCCAATTTCTGGTGGACCTGCTGTAGATCGTGTACGACGTGAAAAAGCTGCAGCAACAAAATATGTTTTCGATGATGACAGTAGTAGTAATGAGGAAGATAATGAACGAGAGGAGAACTTTAAAGTTGTTGATCATGGACAAGGAAATAAAGAGATTGATATACCGATTGTTTCAGAAATTCAAGACACTAAGTCATCAATCCCATCAAGTAGCAGTGGTGGTGGTGTATCTGTAAAGACTGATTCCGGGTCAACATCTCGTGGTGCTTCTGCTATTGTATCAGGTCGTGGACGTGGTCGTGGTGGCAAAGGACGGCAGTTTTCAGCTCCACCTAAATCACAACCTAGTATCAAATCAATGTTTCCTTCTCAGAAGAAAACCACAGTAAACATTTCAACGGACGATGATTCTAATGATGCCACAAGTACAACTACTCAAAAAGAGCCTAGAGTGATTTCTCGACGTACTGTAACGAATCGTGCTCGATACGTGTTTGATGATGATGAAGATGACGATCTAGC]
[+] EMBL CD144702 [ ATAATGAACGAGAGGAGAACTTTAAAGTTGTTGATCATGGACAAGGAAATAAAGAGATTGATATACCGATTGTTTCAGAAATTCAAGACACTAAGTCATCAATCCCATCAAGTAGCAGTGGTGGTGGTGTATCTGTAAAGACTGATTCCGGGTCAACATCTCGTGGTGCTTCTGCTATTGTATCAGGTCGTGGACGTGGTCGTGGTGGCAAAGGACGGCAGTTTTCAGCTCCACCTAAATCACAACCTAGTATCAAATCAATGTTTCCTTCTCAGAAGAAAACCACAGTAAACATTTCAACGGACGATG ]
consensusID : consensus_8830#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence
[TTCGTATGCTTAAAGAAGCCAATTATGATTCAGATCCTGTTAAGGCATGGAAAGAAAGCATAGACAAAGCAGCTGCTTTACAAGAACAGGAAGAAGCTCGTACAGATGAAGCTGTCTCTCAAACTGAAGCGGTTGAAGCAGGCCAACCTGACTACAATTATATTTTAAATATGCCTTTATGGAGTTTGACGAAAGAGCGTAAAGATGACTTGCTCGCTCAGAGAGATGCTAAGCAAAAAGAATTACTCATTCTAAAAAGTAAATCTCCTTCTGATTTGTGGCGTGAAGACCTTAAGAAATTAGAGGAGGAGTATAAGAAAGTTGAAGCGGAGTTGGCTGCTGATGAACAGGCTGCAATTGAAGCAGCTGATAAAAAATTAAAAATAGCATCGACTACAACAGCTGGTCGTGTTGCTGCTACAAAATCACGTAAATTAGCAATGGAAACAAGACCAGATCCAATGGGTAGACGAATTGTCCCGACAGTAGATGCTGATATAATGAAGAAGGTGGAGGGAAATAAAAAGAAACGAAATAAAACAGAAAATGATCCAAATGAAGGTAACGAGTTGGATAATAGTTTCGAAGCGAATGA]
[+] EMBL AI977571 [TTCGTATGCTTAAAGAAGCCAATTATGATTCAGATCCTGTTAAGGCATGGAAAGAAAGCATAGACAAAGCAGCTGCTTTACAAGAACAGGAAGAAGCTCGTACAGATGAAGCTGTCTCTCAAACTGAAGCGGTTGAAGCAGGCCAACCTGACTACAATTATATTTTAAATATGCCTTTATGGAGTTTGACGAAAGAGCGTAAAGATGACTTGCTCGCTCAGAGAGATGCTAAGCAAAAAGAATTACTCATTCTAAAAAGTAAATCTCCTTCTGATTTGTGGCGTGAAGACCTTAAGAAATTAGAGGAGGAGTATAAGAAAGTTGAAGCGGAGTTGGCTGCTGATGAACAGGCTGCAATTGAAGCAGCTGATAAAAAATTAAAAATAGCATCGACTACAACAGCTGGTCGTGTTGCTGCTACAAAATCACGTAAATTAGCAATGGAAACAAGACCAGATCCAATGGGTAGACGAATTGTCCCGACAGTAGATGCTGATATAATGAAGAAGGTGGAGGGAAATAAAAAGAAACGAAATAAAACAGAAAATGA ]
[+] EMBL CD070022 [ AAAAGTAAATCTCCTTCTGA TTGTGGCGTGAAGACCTTAAGAAATTAGAGGAGGAGTATAAGAAAGTTGAAGCGGAGTTGGCTGCTGATGAACAGGCTGCAATTGAAGCAGCTGATAAAAAATTAAAAATAGCATCGACTACAACAGCTGGTCGTGTTGCTGCTACAAAATCACGTAAATTAGCAATGGAAACAAGACCAGATCCTTTGGGTAGACGAATTGTCCCGACAGTAGATGCTGATATACTGAAGAAGGTGGAGGGAAATAAAAAGAAACGAAATAAAACAGAAAATGATCCAAATGAAGGTAACGAGTTGGATAATAGTTTCGAAGCGAATGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8830#0 AAGGTAACGAGTTGGATAATAGTTTCGAAGCGAATGATGAAGAAAATGATGGAAATGATG 60
consensus_8830#1 ------------------------------------------------------------
consensus_8830#0 AACCTAAACCGCTTGCTCAGCGTCTTGGTGTTTCTGAAAAAACAGATATACAGAAGACAG 120
consensus_8830#1 ------------------------TTCGTATGCTTAAAGAAGCCAAT---TATGATTCAG 33
** ** * * ** ** * ** * * ***
consensus_8830#0 CTACTACGCGTGGACGTGGTAAAGGAAGAACTGTCCCAGAAGTCG-TCCAAAGCTTCCGA 179
consensus_8830#1 ATCCT--GTTAAGGCATGG-AAAGAAAGCATAGACAAAGCAGCTGCTTTACAAGAACAGG 90
* ** * * * *** **** *** * * * ** ** * * * * * *
consensus_8830#0 AACCATCTAGTCCAAATAATAGTCCTATTAAACGTAAAAATATGGGTGGAAATGCCAAAC 239
consensus_8830#1 AAGAAGCTCGTACAGATGAAGCTGTCTCTCAAACTGAAG---CGGTTGAAGCAGGCCAAC 147
** * ** ** ** ** * * * ** * ** ** ** * * * ***
consensus_8830#0 GTAA--ACGGTCTAGTCGTATGCCATGGGAGTCTGGC-TCTGACACTGGAGACTCAGCAA 296
consensus_8830#1 CTGACTACAATTATATTTTAAAT-ATGCCTTTATGGAGTTTGACGAAAGAGCGTAAAGAT 206
* * ** * * ** *** * *** * **** *** * * *
consensus_8830#0 GTCATGCCTCTATTGATAG-TGATAATGAATACGTTTCCCCAATTTCTG---GTGGACCT 352
consensus_8830#1 GACTTGCTCGCTCAGAGAGATGCTAAGCAAAAAGAATTACTCATTCTAAAAAGTAAATCT 266
* * *** ** ** ** *** ** * * * * *** ** * **
consensus_8830#0 GCTGTAGATCGTGTACGACGTGAAAAAGCTGCAGCAACAAAATATGTTTTCGATGATGAC 412
consensus_8830#1 CCTTCTGATT---TGTGGCGTGAAGAC-CTTAAGAAATTAGAGGAGGAGTATAAGAAAGT 322
** *** * * ****** * ** ** ** * * * * * **
consensus_8830#0 AGTAGTAGTAATGAGGAAGATAATGAACGAGAGGAGAACTTTAAAGTTGTTGATCATGGA 472
consensus_8830#1 TGAAGCGGAGTTG--GCTGCTGATGAACAGGCTGCAA---TTGAAGCAGCTGATAAAAAA 377
* ** * ** * * * ****** * * * ** *** * **** * *
consensus_8830#0 CAAGGAAATAAAGAGATTGATATA-CCGATTGTTTCAGAAATTCAAGA-CAC-TAAGTCA 529
consensus_8830#1 TTAAAAATAGCATCGACTACAACAGCTGGTCGTGTTGCTGCTACAAAATCACGTAAATTA 437
* ** * ** * * * * * * ** * * *** * *** *** * *
consensus_8830#0 TCAATCCCATCAAGTAGCAGTGGTGGTGGTGTATCTGTAAAGACTGATTCCGGGTCAACA 589
consensus_8830#1 GCAATGGAAACAAG-ACCAGATCCAATGG-GTA-----GACGAATTGTCCCGA--CAGTA 488
**** * **** * *** *** *** * ** * * *** ** *
consensus_8830#0 TCTCGTGGTGCTTCTGCTATTGTATCAGGTCGTGGACGTGGTCGTGGTGGCAAAGGACGG 649
consensus_8830#1 ------GATGCTGATA-TAATGAAGAAGGTGGAGGGAAATAA-AAAGAAACGAAATAAAA 540
* **** * ** ** * **** * ** * * ** *
consensus_8830#0 CAGTTTTCAGCTCCACCTAAATCACAACCTAGTATCAAATCAATGTTTCCTTCTCAGAAG 709
consensus_8830#1 CAG-----AAAATGATCCAAATGAAGGTAACGAGTTGGAT-AATAGTTTCGAAGCGAATG 594
*** * * * **** * * * ** *** ** * * * *
consensus_8830#0 AAAACCACAGTAAACATTTCAACGGACGATGATTCTAATGATGCCACAAGTACAACTACT 769
consensus_8830#1 A----------------------------------------------------------- 595
*
consensus_8830#0 CAAAAAGAGCCTAGAGTGATTTCTCGACGTACTGTAACGAATCGTGCTCGATACGTGTTT 829
consensus_8830#1 ------------------------------------------------------------
consensus_8830#0 GATGATGATGAAGATGACGATCTAGC 855
consensus_8830#1 --------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||