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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8835#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 848 fasta sequence
[GGAGATTTTAATTCAATCTGAATACTTATCACCTTGTGATATATGGGCTGCCGGTTGTATCATAGCAGAGTTATTTAACTTACAGGCAATTTTCCGTGCAGATACAGAACTAGAGATGTTAAAACTCATATTTCAAGTTATTGGATTTCCTGCCCAAAATGAATGGCCTGCATTGTCTTACTTGAAACGACCTAATTTTCACTTCAACTCTTCTGGTTCAAAATTACGTTCGTGTATCAAAACTAACGATAAATCTGCACTCGAATTACTTGAACTAATGATTCAGTTCAATCCAAAAAAGCGAATCACTGCCTTCGATGCACTTTCACTACCGTATTTTCATCCTACTGTCACTAGTAGTACTAATACCGGTGGATCCGTTCAAAACCGTATTCAACACATTGAAACTGCTCTACATAAGCCATTATTAAGAAGTGCAAATGCTTCTCGATCAAATGGACGACAATCCCGCTACTCTGTGAATGCAATTTATCCTACACAGTCATGTGCGGCTGCATTGTCTTCTTATTTCCAGAATAATTTGCCTTCTGCAGTTAATTTTCGCCCATGTCCCGTTGGTGGTGGCGGCATTGATGGAGTTGATGGTTGTGTTCCAGTAACAAATGCTCAAACTGTACTTCTGCACTTACAAATGACCAAATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCGTAATTCTACCACACCACCTANGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGGCATACACA]
[+] EMBL CD114280 [GGAGATTTTAATTCAATCTGAATACTTATCACCTTGTGATATATGGGCTGCCGGTTGTATCATAGCAGAGTTATTTAACTTACAGGCAATTTTCCGTGCAGATACAGAACTAGAGATGTTAAAACTCATATTTCAAGTTATTGGATTTCCTGCCCAAAATGAATGGCCTGCATTGTCTTACTTGAAACGACCTAATTTTCACTTCAACTCTTCTGGTTCAAAATTACGTTCGTGTATCAAAACTAACGATAAATCTGCACTCGAATTACTTGAACTAATGATTCAGTTCAATCCAAAAAAGCGAATCACTGCCTTCGATGCACTTTCACTACCGTATTTTCATCCTACTGTCACTAGTAGTACTAATACCGGTGGATCCGTTCAAAACCGTATTCAACACATTGAAACTGCTCTACATAAGCCATTATTAAGAAGTGCAAATGCTTCTCGATCAAATGGACGACAATCCCGCTACTCTGTGAATGCAATTTATCCTACACAGTCATGTGCGGCTGCATTGTCTTCTTATTTCCAGAATAATTTGCCTTCTGCAGTTAATTTTCGCCCATGTCCCGTTGGTGGTGGCGGCATTGATGGAGTTGATGGTTGTGTTCCAGTAACAAATGCTCAAACTGTAC ]
[+] EMBL CD201012 [ CGATGCACTTTCACTACCGTATTTTCATCCTACTGTCACTAGTAGTACTAATACCGGTGGATCCGTTCAAAACCGTATTCAACACATTGAAACTGCTCTACATAAGCCATTATTAAGAAGTGCAAATGCTTCTCGATCAAATGGACGACAATCCCGCTACTCTGTGAATGCAATTTATCCTACACAGTCATGTGCGGCTGCATTGTCTTCTTATTTCCAGAATAATTTGCCTTCTGCAGTTAATTTTCGCCCATGTCCCGTTGGTGGTGGCGGCATTGATGAAGTTGATGGTTGTGTTCCAGTAACAAATGCTCAAACTCTAATTCTGCACTTACAAATGACCAAATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCGTAATTCTACCACACCACCTANGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGGCATACACA]
consensusID : consensus_8835#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 528 fasta sequence
[GGTGGTGGCGGCATTGATGAAGTTGATGGTTGTGTTCCAGTAACAAATGCTCAAACTGTACCTCACACACTTCACTCAACATTTAATCATTTAGCTAATTCTGCACTTACAAATGACCAAATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCGTAATTCTACCACACCACTTAGGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGGCATACACAACCCACTAGAACCTGTCTTATGGAAAACAATTACGGAGTGAATAGTTCACAGAAAATTGGAAACCAGAAGACATGCAAAAACTCCATTGAAATCTTATCAGATAATACAGCCGTACAAAAGCCAAATAATACAGACCCTTTAAATGTAACAAGTCACGTAGTTAGACAGAAGAAAATAGCTCGCCGTCGAACAGTCATGGGGGTTGTAGAGACAGCTAAT]
[-] EMBL AI068004 [GGTGGTGGCGGCATTGATGAAGTTGATGGTTGTGTTCCAGTAACAAATGCTCAAACTGTACCTCACACACTTCACTCAACATTTAATCATTTAGCTAATTCTGCACTTACAAATGACCAAATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCGTAATTCTACCACACCACTTAGGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGGCATACACAACCCACTAGAACCTGTCTTATGGAAAACAATTACGGAGTGAATAGTTCACAGAAAATTGGAAACCAGAAGACATGCAAAAACTCCATTGAAATCTTATCAGATAATACAGCCGTACAAAAGCCAAATAATACAGACCCTTTAAATGTAACAAGTCACGTAGTTAGACAGAAGAAAATAGCTCGCCGTCGAACAGTCATGGGGGTTGTAGAGACAGCTAAT]
[-] EMBL CD170204 [ CATTTAGCTAATTCTGCACTTACAAATGACCAAATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGCACCCTTAAATAACATTGACCGTAATTCTACCACACCACCTAGGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGGCATACACAACCCACTAGAACCTGTCTTATGGAAAACAATTACGGAGTGAATAGTTCACAGAAAATTGGAAACCAGAAGACATGCAAAAACTCCATTGAAATCTTATCAGATAATACAG ]
[-] EMBL AI067691 [ AATGACCAAATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCGTAATTCTACCACACCACTTAGGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGGCATACACAACCCACTAGAACCTGTCTTATGGAAAACAATTACGGAGTGAATAGTTCACAGAAAATTGGAAACCAGAAGACATGCAAAAACTCCATTGAAATCTTATCAGATAATACAGCCGTACAAAAGCCAAATAATACAGACCCTTTAAATGTAACAAGTCACGTAGTTAGACAGAAGAAAATAGCTCGCCGTCGAACAGTCATGGGGGTTGTAGAGACAGCTAAT]
[-] EMBL AI068140 [ GATATTGATCAGCATCAGCGTAATTTGATTATATCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCGTAATTCTACCACACCACCTAGGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAGGCATACACAACCCACTAGAACCTGTCTTATGGAAAACAATTACGGAGTGAATAGTTCACAGAAAATTGGAAACCAGAAGACATGCAAAAACTCCATTGAAATCTTATCAGATAATACAGCCGTACAAAAGCCAAATAATACAGACCCTTTAAATGTAACAAGTCACGTAGTTAGACAGAAGAAAATAGCTCGCCGTCGAACAGTCATGGGGGTTGTAGAGACAGCTAAT]
[-] EMBL AI068177 [ AGACCGCTAACTCGACAACAAACTACATCTATCCGAAGGCATACACAACCCACTAGAACCTGTCCTATGGAAAACAATTACGGAGTGAATAGTTCACAGAAAATTGGAAACCAGAAGACATGCAAAAACTCCATTGAAATCTTATCAGTTAATACAGCCGTACAAAAGCCAATTAATACAGACCCTTTAAATGTAACAAGTCACGTAGTTAGACAGAAGAAAATAGCTCGCCGTCGAACAGTCATGGGGGTTGTAGAGACAGCTAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8835#0 GGAGATTTTAATTCAATCTGAATACTTATCACCTTGTGATATATGGGCTGCCGGTTGTAT 60
consensus_8835#1 ---------------------------------------------------------GGT 3
*
consensus_8835#0 CATAGCAGAGTTATTTAACTTACAGGCAATTTTCCGTGCAGATACAGAACTAGAGATGTT 120
consensus_8835#1 GGTGGCGGCATTGATGAAGTTGATGGTTGTGTTCC----AGTAACAAATGCTCAAACTGT 59
* ** * ** * ** ** ** * **** ** *** * * * *
consensus_8835#0 AAAACTCATATTTCAAGTTATTGGATTTCCTGCCCAAAATGAATGGCCTGCATTGTCTTA 180
consensus_8835#1 ACCTCACACACTTCACTCAAC---ATTTAATCATTTAGCTAATT---CTGCA----CTTA 109
* * ** * **** * **** * * * * * ***** ****
consensus_8835#0 CTTGAAACGACCTAATTTTCACTTCAACTC-TTCTGGTTCAAAATTACGTTCGTGTATCA 239
consensus_8835#1 CAAATGACCAAATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTA--- 166
* ** * ****** ***** * ***** * * * * * ***
consensus_8835#0 AAACTAACGATAAATCTGCACTCGAATTACTTGAACTAATGATTCAGTTCAATCCAAAAA 299
consensus_8835#1 -ATTTGATTATA----TCAGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACC 221
* * * *** * * ** ** * * ** **** * *** *
consensus_8835#0 AGCGAATCACTGCCTTCGATGCACTTTCACTACCGTATTTTCATCCTACTGTCACTAGTA 359
consensus_8835#1 CTTAAATAA---CATTGACCGTAATTCTACCACACCACTT--AGGAGACCGCTAACTCGA 276
*** * * ** * * ** ** ** * ** * ** * * *
consensus_8835#0 GTACTAATACCGGTGGATCCGTTCAAAACCGTATTCAACACATTGAAACTGCTCTACATA 419
consensus_8835#1 CAACAAAC-----TAAATCTATCCGAAGGCATACACAACCCACTAGAACCTGTCT-TATG 330
** ** * *** * * ** * ** **** ** * *** *** **
consensus_8835#0 AGCCATTATTAAGAAGTGCAAATGCTTCTCGATCAAATGGACGACAATCCCGCTACTCTG 479
consensus_8835#1 GAAAACAATTACGGAGTG--AATAGTTCACAGAAAATTGGA----AACCAGAAGAC---- 380
* **** * **** *** *** * ** **** ** * **
consensus_8835#0 TGAATGCAATTTATCCTACACAGTCATGTGCGGCTGCATTGTCTTCTTATTTCCAGAATA 539
consensus_8835#1 ---ATGCAAAAACTCCATTGAAATCTTATCAGATAATACAGCCGTACAAAAGCCA-AATA 436
****** *** * ** * * * * * * * * *** ****
consensus_8835#0 ATTTGCCTTCTGCAGTTAATTTTCGCCCATGTCCCGTTGGTGGTGGCGGCATTGATGGAG 599
consensus_8835#1 ATACAGACCCT----TTAAATGTAAC--AAGTCACGTAGTTA--GACAG-AAGAAAATAG 487
** ** **** * * * * *** *** * * * * * * * **
consensus_8835#0 TTGATGGTTGTGTTCCAGTAACAAATGCTCAAACTGTACTTCTGCACTTACAAATGACCA 659
consensus_8835#1 CTCGCCGTCGAACAGTCATGGGGGTTGTAGAGACAGCTAAT------------------- 528
* ** * * ** * ** * *
consensus_8835#0 AATAATTTCTACTTCGTGTAGTTCTGATATTGATCAGCATCAGCGTAATTTGATTATATC 719
consensus_8835#1 ------------------------------------------------------------
consensus_8835#0 AGTTGTAAATAATGCCATTAGTGATACCTCATCATCTGTACCCTTAAATAACATTGACCG 779
consensus_8835#1 ------------------------------------------------------------
consensus_8835#0 TAATTCTACCACACCACCTANGAGACCGCTAACTCGACAACAAACTAAATCTATCCGAAG 839
consensus_8835#1 ------------------------------------------------------------
consensus_8835#0 GCATACACA 848
consensus_8835#1 ---------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||