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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8836#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1101 fasta sequence [GAGGGGCAGAGTACATTCATACTTACGAATCCTAATCATCTGCTTAAATATAAACCTCGTAGCCTTTCCGTTCTAAAATTAAAGTAGATATATTTCATATAAGAAGTACATTTGACATACACCTTCATCACTTGTGGCTCAGTTAGTCAGACTGATATAAGTGAAGTAATGTAATAACACCTTATGGTTGAAAACCGAACGTCTTTCTTACTAAACTATTTCTCAAGTGAAGTCCTTTTATGAATAAAAAAACCTACATCACATCATTACTATTATTCGCCGATTCGACTGACATATGCTTTCAATTTTTCAGGATTTAAAAAACCAAGGGATGCCAAATTCTTGTCAAAATAGATATCGTCGAATACTCCGGCGCAGAAAAGAAAGGCGAAGACAGGAAAAATTTCGCAAGAAGATAGCTTTGCGCAATAAAATAAGGGCAGATATAGAACTAAACCGTTATCACAGCAAAAAGTTTCGGAAGAAGGAAGTCTCTAACAGATTGCAGATCGCACTGCATGAAGGAATAAGGATCTACATAGATTGTTCTTACGAGGCTCTTATGTCTCCTAAAGTTCGTGTTAACGCGGAAAGCTATCACTNTGTAGGAATGTAATAAATTCGCTCAACAACTATGTCGACTNTATGGAGCANAC-AAAAAGCAACGAAGCCCCTTAGTATTAACCTTGTGAA-TTTTCACAACATGGACCTTTATTTCATGCTTGCCAGTCCANATGTGANCGATTCCT-ACGTATAAGAATGGA-TGTACTCTGAAACACCATC-AGTA-TACACC--AAAAT-TAGAAATCGTGTACTCAGTCCGACGCAAGAACACTGATTCTATATCGAAATGGGCGACGTNCTAGATGTCTGGGATGACTTACTAGGGNACTACGACAGACTGAATCAGTTACCGGCTGCATNCTATGAAAGTCATTGAAAATCACCTGTACGAATCAGCNCATATGTACATGGATGCGACGAGGGCCATCAACCAGTGAACAATTGACTGTCTGAAGGCTAAAAAAACTGCGCCTCTTGGATTTGGGTANGGAGCATTACTCTTACCCACAAGGAAGGGGGGGGTTTNCNNNNAAGAGNNNA] [+] EMBL CD082112 [GAGGGGCAGAGTACATTCATACTTACGAATCCTAATCATCTGCTTAAATATAAACCTCGTAGCCTTTCCGTTCTAAAATTAAAGTAGATATATTTCATATAAGAAGTACATTTGACATACACCTTCATCACTTGTGGCTCAGTTAGTCAGACTGATATAAGTGAAGTAATGTAATAACACCTTATGGTTGAAAACCGAACGTCTTTCTTACTAAACTATTTCTCAAGTGAAGTCCTTTTATGAATAAAAAAACCTACATCACATCATTACTATTATTCGCCGATTCGACTGACATATGCTTTCAATTTTTCAGGATTTAAAAAACCAAGGGATGCCAAATTCTTGTCAAAATAGATATCGTCGAATACTCCGGCGCAGAAAAGAAAGGCGAAGACAGGAAAAATTTCGCAAGAAGATAGCTTTGCGCAATAAAATAAGGGCAGATATAGAACTAAACCGTTATCACAGCAAAAAGTTTCGGAAGAAGGAAGTCTCTAACAGATTGCAGATCGCACTGCATGAAGGAATAAGGATCTACATAGATTGTTCTTACGAGGCTCTTATGTCTCCTAAAGTTCGTGTTAACGCGGAAAGCTATCACTNTGTAGGAATGTAATAAATTCGCTCAACAACTATGTCGACTNTATGGAGCANAC AAAAAGCAACGAAGCCCCTTAGTATTAACCTTGTGAA TTTTCACAACATGGACCTTTATTTCATGCTTGCCAGTCCANATGTGANCGATTCCT ACGTATAAGAATGGA TGTACTCTGAAACACCATC AGTA TACACC AAAAT TAGAAATCGTGTACTCAGTCCGACGCAAGAACACTGATTCTATATCGAAATGGGCGACGTNCTAGATGTCTGGGATGACTTACTAGGGNACTACGACAGACTGAATCAGTTACCGGCTGCATNCTATGAAAGTCATTGAAAATCACCTGTACGAATCAGCNCATATGTACATGGATGCGACGAGGGCCATCAACCAGTGAACAATTGACTGTCTGAAGGCTAAAAAAACTGCGCCTCTTGGATTTGGGTANGGAGCATTACTCTTACCCACAAGGAAGGGGGGGGTTTNCNNNNAAGAGNNNA] [-] EMBL CD098280 [ GTTTCGGAAGAAGGAAGTCTCTAACAGATTGCAGATCGCACTGCATGAAGGAATAAGGATCTACATAGATTGTTCTTACGAGGCTCTTATGTCTCCTAAAGTTCGTGTTAACGCGGAAAGCTATCACTTTGCAGGAATGTAATAAATTCGCTCAACAACTATGTCGACTTTATGGAGCAAACAAAAAAGCAACGAAGCCCTTAAGTATTAACCTTGTGAATTTTTCACAACATGGACCTTTATTTCATGCTTGCCAGTCCAAATGTGACGGATTCCTAACGTATAAGATTGGATTGTACTCTGAAACACCATCAAGCATTACACCAGAAAATATAGAAATCGTGTAC ] consensusID : consensus_8836#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 615 fasta sequence [AAGTTCGTGTTAACGCGGAAAGCTATCACTTTGTAGGAATGTAATAAATTCGCTCAACAACTATGTCGACTTTATGGAGCAAACAAAAAAGCAACGAAGCCCTTAAGTATTAACCTTGTGAATTTTTCACAACATGGACCTTTATTTCATGCTTGCCAGTCCAAATGTGACGGATTCCTAACGTATAAGATTGGATTGTACTCTGAAACACCATCAAGTATTACACCAAAAAATATAGAAATCGTGTACCTCAGTCCGGACGCAAAAGAACCACTGATATCTATATCGGAAAATTGTGCGTACGTTTTAGGATGTCTTGTGGATGAACATATACTAAAGGGACGTAGCCGACAAGAAGCTGAGAATCAA-GGTTACCGTGCCGT-GCGACTCCCTATTGAAGAGTTTACATCTGGAAAAAATTCCAACCCTGTGTTAGCGATAAATCATGTCGTCGATATATTGTTAGCATATATGGAAAATGGCGGTGACTGGAAGGCGGCCTTACATTTTAAATTACCTCAAAGATTTTTGAAATAATACATATATATGTGACACTTTGTTATAACTCATGAAGAAATGCAAGTTGTATAATAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CD075727 [AAGTTCGTGTTAACGCGGAAAGCTATCACTTTGTAGGAATGTAATAAATTCGCTCAACAACTATGTCGACTTTATGGAGCAAACAAAAAAGCAACGAAGCCCTTAAGTATTAACCTTGTGAATTTTTCACAACATGGACCTTTATTTCATGCTTGCCAGTCCAAATGTGACGGATTCCTAACGTATAAGATTGGATTGTACTCTGAAACACCATCAAGTATTACACCAAAAAATATAGAAATCGTGTACCTCAGTCCGGACGCAAAAGAACCACTGATATCTATATCGGAAAATTGTGCGTACGTTTTAGGATGTCTTGTGGATGAACATATACTAAAGGGACGTAGCCGACAAGAAGCTGAGAATCAA GGTTACCGTGCCGT GCGACTCCCTATTGAAGAGTTTACATCTGGAAAAAATTCCAACCCTGTGTTAGCGATAAATCATGTCGTCGATATATTGTTAGCATATATGGAAAATGGCGGTGACTGGAAGGCGGCCTTACATTTTAAATTACCTCAAAGATTTTTGAAATAATACATATATATGTGACACTTTGTTATAACTCATGAAGAAATGCAAG ] [-] EMBL AI395090 [ GCTGGTGATCAAGGGTTACCGT ACGTAGCGACTCCTTATTGAGGAGTTTACATCTGGAAAAAATTCCAACCGTGTGTTAGCGATAAATCATGTCGTCGATCTATTGTTAGCATGTATGGAAAATGGCGGTGACTGGAAGGCGGCCTTACATTGTAAATTACCTCAAAGATTTTTGAAATAATACATATATATGTGACACTTTGTTATAACTCATGAAGAAATGCAAGTTGTATAATAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_8836#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 498 fasta sequence [AACTGACGGCGGTGTAGCCGAATAGTTTATGTGCTCCTGGTCTCTATCCCGAGATTGTCATAATCTGAGGATTTAAAAAACCAAGGGATGCCAAATTCTTGTCAAAATAGATATCGTCGAATACTCCGGCGCAGAAAAGAAAGGCGAAGACAGGAAAAATTTCGCAAGAAGATAGCTTTGCGCAATAAAATAAGGGCAGATATAGAACTAAACCGTTATCACAGCAAAAAGTTTCGGAAGAAGGAAGTCTCTAACAGATTGCAGATCGCACTGCATGAAGGAATAAGGATCTACATAGATTGTTCTTACGAGGCTCTTATGTCTCCTAAAGAATGTAATAAATTCGCTCAACAACTATGTCGACTTTATGGAGCAAACAAAAAAGCAACGAAGCCCTTAAGTATTAACCTTGTGAATTTTTCACAACATGGACCTTTATTTCATGCTTGCCAGTCCAAATGTGACGGATTCCTAACGCATAAGATTGGATTGTACTCT] [+] EMBL CD121037 [AACTGACGGCGGTGTAGCCGAATAGTTTATGTGCTCCTGGTCTCTATCCCGAGATTGTCATAATCTGAGGATTTAAAAAACCAAGGGATGCCAAATTCTTGTCAAAATAGATATCGTCGAATACTCCGGCGCAGAAAAGAAAGGCGAAGACAGGAAAAATTTCGCAAGAAGATAGCTTTGCGCAATAAAATAAGGGCAGATATAGAACTAAACCGTTATCACAGCAAAAAGTTTCGGAAGAAGGAAGTCTCTAACAGATTGCAGATCGCACTGCATGAAGGAATAAGGATCTACATAGATTGTTCTTACGAGGCTCTTATGTCTCCTAAAGAATGTAATAAATTCGCTCAACAACTATGTCGACTTTATGGAGCAAACAAAAAAGCAACGAAGCCCTTAAGTATTAACCTTGTGAATTTTTCACAACATGGACCTTTATTTCATGCTTGCCAGTCCAAATGTGACGGATTCCTAACGCATAAGATTGGATTGTACTCT] [+] EMBL CD121108 [AACTGACGGCGGTGTAGCCGAATAGTTTATGTGCTCCTGGTCTCTATCCCGAGATTGTCATAATCTGAGGATTTAAAAAACCAAGGGATGCCAAATTCTTGTCAAAATAGATATCGTCGAATACTCCGGCGCAGAAAAGAAAGGCGAAGACAGGAAAAATTTCGCAAGAAGATAGCTTTGCGCAATAAAATAAGGGCAGATATAGAACTAAACCGTTATCACAGCAAAAAGTTTCGGAAGAAGGAAGTCTCTAACAGATTGCAGATCGCACTGCATGAAGGAATAAGGATCTACATAGATTGTTCTTACGAGGCTCTTATGTCTCCTAAAGAATGTAATAAATTCGCTCAACAACTATGTCGACTTTATGGAGCAAACAAAAAAGCAACGAAGCCCTTAAGTATTAACCTTGTGAATTTTTCACAACATGGACCTTTATTTCATGCTTGCCAGTCCAAATGTGACGGATTCCTAACGTATAAGATTGGATTGTACTCT] consensusID : consensus_8836#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence [ACGTCCCTTTAGTATATGTTCATCCACAAGACATCCTAGAACGTACGCACAATTTTCCGATATAGATATCAGTGGCTCTTTTGCGTCCGGACTGAGGTACACGATTTCTATATTTTCTGGTGTAATGCTTGATGGTGTTTCAGAGTACAATCCAATCTAATGAGATAGTTAAATAGCATTTTGTAATAAAGCGAAATAATACGAAAACTGTATATCTGGATATGAGTCGTTTTTGTCACGAAGCTAGAAGTGCACACATACATACGATCATTTACCAGGCTAGTGAGATAGTGGAGCTACATTGGTA] [+] EMBL CD170229 [ACGTCCCTTTAGTATATGTTCATCCACAAGACATCCTAGAACGTACGCACAATTTTCCGATATAGATATCAGTGGCTCTTTTGCGTCCGGACTGAGGTACACGATTTCTATATTTTCTGGTGTAATGCTTGATGGTGTTTCAGAGTACAATCCAATCTAATGAGATAGTTAAATAGCATTTTGTAATAAAGCGAAATAATACGAAAACTGTATATCTGGATATGAGTCGTTTTTGTCACGAAGCTAGAAGTGCACACATACATACGATCATTTACCAGGCTAGTGAGATAGTGGAGCTACATTGGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8836#0 GAGGGGCAGAGTACATTCATACTTACGAATCCTAATCATCTGCTTAAATATAAACCTCGT 60
consensus_8836#2 ------------------------------------------------------------
consensus_8836#1 ------------------------------------------------------------
consensus_8836#3 ------------------------------------------------------------
consensus_8836#0 AGCCTTTCCGTTCTAAAATTAAAGTAGATATATTTCATATAAGAAGTACATTTGACATAC 120
consensus_8836#2 ------------------------------------------------------------
consensus_8836#1 ------------------------------------------------------------
consensus_8836#3 ------------------------------------------------------------
consensus_8836#0 ACCTTCATCACTTGTGGCTCAGTTAGTCAGACTGATATAAGTGAAGTAATGTAATAACAC 180
consensus_8836#2 ------------------------------------------------------------
consensus_8836#1 ------------------------------------------AAGTTCGTGTTAACGCGG 18
consensus_8836#3 ------------------------------------------------------------
consensus_8836#0 CTTATGGTTGAAAACCGAACGTCTTTCTTACTAAACTATTTCTCAAGTGAAGTC--CTTT 238
consensus_8836#2 ------------------------------------------------------------
consensus_8836#1 AAAGCTATCACTTTGTAGGAATGTAATAAATTCGCTCAACAACTATGTCGACTT--TATG 76
consensus_8836#3 --------------------------------------------ACGTCCCTTTAGTATA 16
consensus_8836#0 TATGAATAAAAAAACCTACATCACATCATTACTATTATTCGCCGATTCGACTGACATATG 298
consensus_8836#2 ----AACTGACGGCGGTGTAGCCGAATAGTTTATGTGCTCCTGGTCTCTATCCCGAGATT 56
consensus_8836#1 GAGCAAACAAAAAAGCAACGAAGCCCTTAAGTATTAACCTTGTGAATTTTTCACAACATG 136
consensus_8836#3 TGTTCATCCACAAGACATCCTAGAACGTACGCA-CAATTTTCCGATATAGATATCAGTGG 75
* * * *
consensus_8836#0 C-TTTCAATTTTTCAGGATTTAAAAAACCAAGGGATGCCAAATTCTTGTCAAAATAGATA 357
consensus_8836#2 G-TCATAATCTG--AGGATTTAAAAAACCAAGGGATGCCAAATTCTTGTCAAAATAGATA 113
consensus_8836#1 GACCTTTATTTC---ATGCTTGCCAGTCCAAATG-TGACGGATTCCTAACGTATAAGATT 192
consensus_8836#3 CTCTTTTGCGTC------CGGACTGAGGTACACGATTTCTATATTTTCTGGTGTAATGCT 129
* * * * * * * *
consensus_8836#0 TCGTCGAATACTCCGGCGCAGAAAAGAAAGGCGA-AGACAGGAAAAATTTCGCAAGAAGA 416
consensus_8836#2 TCGTCGAATACTCCGGCGCAGAAAAGAAAGGCGA-AGACAGGAAAAATTTCGCAAGAAGA 172
consensus_8836#1 GGATTGTACTCTGAAACACCATCAAGTATTACACCAAAAAATATAGAAATCGTGTACCTC 252
consensus_8836#3 TGATGGTGTTTCAGAGTACAATCCAATCTAATGAGATAGTTAAATAGCATTTTGTAATAA 189
* * * * * * * *
consensus_8836#0 TAGCTTTGCGCAATAAAATAAG-GGCAGATATAGAACTAAACCGTTATCACAGC--AAAA 473
consensus_8836#2 TAGCTTTGCGCAATAAAATAAG-GGCAGATATAGAACTAAACCGTTATCACAGC--AAAA 229
consensus_8836#1 AGTCCGGACGCAAAAGAACCACTGATATCTATATCGGAAAATTGTGCGTACGTTTTAGGA 312
consensus_8836#3 AGC---GAAATAATACGAAAAC-TGTATATCTGGATATGAGTCGTTTTTGTCACGAAGCT 245
** * * * * * * * ** *
consensus_8836#0 AGTTTCGGAAGAAGGAAGTCTCTAACAGATTGCAGATCGCACTGCATGAAGGAATAAGGA 533
consensus_8836#2 AGTTTCGGAAGAAGGAAGTCTCTAACAGATTGCAGATCGCACTGCATGAAGGAATAAGGA 289
consensus_8836#1 TGTCTTGTGGATGAACATATACTAAAGGGACGTAGCCGACAAGAAGCTGAGAATCAAGGT 372
consensus_8836#3 AGAAGTGCACACATACATACGATCATTTACCAGGCTAGTGAGATAGTGGAGCTACATTGG 305
* * * * * * ** * *
consensus_8836#0 T-CTACATAGATTG--TTCTTAC-GAGGCTCTTATGTCTCCTAAAGTTCGTGTTAACGCG 589
consensus_8836#2 T-CTACATAGATTG--TTCTTAC-GAGGCTCTTATGTCTCCTAAAG-------------- 331
consensus_8836#1 TACCGTGCCGTGCGACTCCCTATTGAAGAGTTTACATCTGGAAAAAATTCCAACCCTGTG 432
consensus_8836#3 TA---------------------------------------------------------- 307
*
consensus_8836#0 GAAAGCTATCACTNTGTAGGAATGTAATAAATTCGCTCAACAACTATGTCGACTNTATGG 649
consensus_8836#2 --------------------AATGTAATAAATTCGCTCAACAACTATGTCGACTTTATGG 371
consensus_8836#1 --------TTAGCGATAAATCATGTCGTCGATATATTGTTAGCATATATGGA--AAATGG 482
consensus_8836#3 ------------------------------------------------------------
consensus_8836#0 AGCANACAAAAA-GCAACGAAGCCCCTTAGTATTAACCTTGTGAATTTT-CACAACATGG 707
consensus_8836#2 AGCAAACAAAAAAGCAACGAAGCCCTTAAGTATTAACCTTGTGAATTTTTCACAACATGG 431
consensus_8836#1 CGGTGACTGGAAGGCGGCCTTACATTTTA--AATTACCTCAAAGATTTTTGAAATAATAC 540
consensus_8836#3 ------------------------------------------------------------
consensus_8836#0 ACCTTTATTTCATGCTT-GCCAGTCCANATGTGANCGATTCCTA-CGTATAAGAATGGAT 765
consensus_8836#2 ACCTTTATTTCATGCTT-GCCAGTCCAAATGTGACGGATTCCTAACGCATAAGATTGGAT 490
consensus_8836#1 ATATATATGTGACACTTTGTTATAACTCATG-AAGAAATGCAAGTTGTATAATAAAAAAA 599
consensus_8836#3 ------------------------------------------------------------
consensus_8836#0 -GTACTCTGAAACACCATCAGTATACACCAAAATTAGAAATCGTGTACTCAGTCCGACGC 824
consensus_8836#2 TGTACTCT---------------------------------------------------- 498
consensus_8836#1 AAAAAAAAAAAAAAAA-------------------------------------------- 615
consensus_8836#3 ------------------------------------------------------------
consensus_8836#0 AAGAACACTGATTCTATATCGAAATGGGCGACGTNCTAGATGTCTGGGATGACTTACTAG 884
consensus_8836#2 ------------------------------------------------------------
consensus_8836#1 ------------------------------------------------------------
consensus_8836#3 ------------------------------------------------------------
consensus_8836#0 GGNACTACGACAGACTGAATCAGTTACCGGCTGCATNCTATGAAAGTCATTGAAAATCAC 944
consensus_8836#2 ------------------------------------------------------------
consensus_8836#1 ------------------------------------------------------------
consensus_8836#3 ------------------------------------------------------------
consensus_8836#0 CTGTACGAATCAGCNCATATGTACATGGATGCGACGAGGGCCATCAACCAGTGAACAATT 1004
consensus_8836#2 ------------------------------------------------------------
consensus_8836#1 ------------------------------------------------------------
consensus_8836#3 ------------------------------------------------------------
consensus_8836#0 GACTGTCTGAAGGCTAAAAAAACTGCGCCTCTTGGATTTGGGTANGGAGCATTACTCTTA 1064
consensus_8836#2 ------------------------------------------------------------
consensus_8836#1 ------------------------------------------------------------
consensus_8836#3 ------------------------------------------------------------
consensus_8836#0 CCCACAAGGAAGGGGGGGGTTTNCNNNNAAGAGNNNA 1101
consensus_8836#2 -------------------------------------
consensus_8836#1 -------------------------------------
consensus_8836#3 -------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||