These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8837#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 871 fasta sequence [ATTTCGGCACGAGGACGCGCTTTAGATCGAATAAAATATCATCATTCATCTCAAAGTATTCAACCACTTGAAGGAAAACCACCTGTACGTTGTCTTAAGCGTTCACTTACCACTAATTCATTGGATATTCGTCATCAGTTAATTCGCCCAAAAGTTTTTAATCCATTTTGTGGTGGCAATAGTTATTCACAAAATACACCCTCAATAAGAAGAGTCCGAACAAATTCTAACACTGATTTATTGTCCGTTGATAATACCGTTAATAGTATTCTGGCGCCAACACCATCCACTACTTCAAATCAAATCCATCAAGTTCAATCCTCTCCACAAAAAGAACATTTGTCATACCATAGTCTTTCTACATGTAGTGAATAAGTGTATGATACATTACTTGTTTTCATTTCAACGAATCTATGTTGTTATAATCCTTATTTACAAATCAATCTGTATTCATTCTGTACATAGGTGTATAGTTTGTGTGTACATACATGTATATTCAGTTGATTTTAGTCGAACAATAAAATTACATTTCGAAACAATTTCCTCTTAACTACCCATTCATTTACAACCTGGTATTCACAATTCTCTCCTATTTTTTGTTATGTATAGTTTTTGTTTTGTTTGGTTTAAATAGTTCTGCTTACTTTCACTAGGTCTCAGCATTTCGATAATGGTTTTTTCTAAAAAACAGTTCTCTGTGCTAATCATTTATGCTTTGTGACATTATTACCGTCCAAGG-CCCTCTCGGTTATTGTTTTTTCCTCGTTATTCGTCTCAGCTTATGTTCACTGG-TGTGTTATTTATTTTACTTTGTATTTTTGTTATGTCTCTTC-TTTTCGCAATGACGTACGAATGTATATATATACATCTG] [+] EMBL CD082284 [ATTTCGGCACGAGGACGCGCTTTAGATCGAATAAAATATCATCATTCATCTCAAAGTATTCAACCACTTGAAGGAAAACCACCTGTACGTTGTCTTAAGCGTTCACTTACCACTAATTCATTGGATATTCGTCATCAGTTAATTCGCCCAAAAGTTTTTAATCCATTTTGTGGTGGCAATAGTTATTCACAAAATACACCCTCAATAAGAAGAGTCCGAACAAATTCTAACACTGATTTATTGTCCGTTGATAATACCGTTAATAGTATTCTGGCGCCAACACCATCCACTACTTCAAATCAAATCCATCAAGTTCAATCCTCTCCACAAAAAGAACATTTGTCATACCATAGTCTTTCTACATGTAGTGAATAAGTGTATGATACATTACTTGTTTTCATTTCAACGAATCTATGTTGTTATAATCCTTATTTACAAATCAATCTGTATTCATTCTGTACATAGGTGTATAGTTTGTGTGTACATACATGTATATTCAGTTGATTTTAGTCGAACAATAAAATTACATTTCGAAACAATTTCCTCTTAACTACCCATTCATTTACAACCTGGTATTCACAATTCTCTCCTATTTTTTGTTATGTATAGTTTTTGTTTTGTTTGGTTTAAATAGTTCTGCTTACTTTCACTANGTCTCAGCATTTCGATAATGGTTNTTTCT AAAAACAGTTCTCTGTGCT ATCATTTATGCTNTGTGACATTATTACCGTNCAAGGCCCCTCTC GTTATTGGTTTTTCCTCGTTATTCGNCTCAGCTTATGTTCACTGGNNGNGNTATTTATTTTACTTTGNATTTTTGGTATGGCTCTTCTTTTTCGC ATGACGTACGAATGGAT TATTTACAnt ] [+] EMBL CD079197 [ AGTATTCAACCACTTGAAGGAAAACCACCTGTACGTTGTCTTAAGCGTTCACTTACCACTAATTCATTGGATATTCGTCATCAGTTAATTCGCCCAAAAGTTTTTAATCCATTTTGTGGTGGCAATAGTTATTCACAAAATACACCCTCAATAAGAAGAGTCCGAACAAATTCTAACACTGATTTATTGTCCGTTGATAATACCGTTAATAGTATTCTGGCGCCAACACCATCCACTACTTCAAATCAAATCCATCAAGTTCAATCCTCTCCACAAAAAGAACATTTGTCATACCATAGTCTTTCTACATGTAGTGAATAAGTGTATGATACATTACTTGTTTTCATTTCAACGAATCTATGTTGTTATAATCCTTATTTACAAATCAATCTGTATTCATTCTGTACATAGGTGTATAGTTTGTGTGTACATACATGTATATTCAGTTGATTTTAGTCGAACAATAAAATTACATTTCGAAACAATTTCCTCTTAACTACCCATTCATTTACAACCTGGTATTCACAATTCTCTCCTATTTTTTGTTATGTATAGTTTTTGTTTTGTTTGGTTT NATAGTTCTGCTTACTTTCACTAGGTCTCAGCATTTCG ] [+] EMBL CD084319 [ cgaggGTTTTTAATCCATTTTGTGGTGGC ATAGTTATTCACAAAATACACCCTCAATAAGAAGAGTCCGAACAAATTCTAACACTGATTTATTGTCCGTTGATAATACCGTTAATAGTATTCTGGCGCCAACACCATCCACTACTTCAAATCAAATCCATCAAGTTCAATCCTCTCCACAAAAAGAACATTTGTCATACCATAGTCTTTCTACATGTAGTGAATAAGTGTATGATACATTACTTGTTTTCATTTCAACGAATCTATGTTGTTATAATCCTTATTTACAAATCAATCTGTATTCATTCTGTACATAGGTGTATAGTTTGTGTGTACATACATGTATATTCAGTTGATTTTAGTCGAACAATAAAATTACATTTCGAAACAATTTCCTCTTAACTACCCATTCATTTACAACCTGGTATTCACAATTCTCTCCTATTTTTTG ] [-] EMBL CD074419 [ ATTGTCCGTTGATAATACCGTTAATAGTATTCTGGCGCCAACACCATCCACTACTTCAAATCAAATCCATCAAGTTCAATCCTCTCCACAAAAAGAACATTTGTCATACCATAGTCTTTCTACATGTAGTGAATAAGTGTATGATACATTACTTGTTTTCATTTCAACGAATCTATGTTGTTATAATCCTTATTTACAAATCAATCTGTATTCATTCTGTACATAGGTGTATAGTTTGTGTGTACATACATGTATATTCAGTTGATTTTAGTCGAACAATAAAATTACATTTCGAAACAATTTCCTCTTAACTACCCATTCATTTACAACCTGGTATTCACAATTCTCTCCTATTTTTTGTTATGTATAGTTTTTGTTTTGTTTGGTTTAAATAGTTCTGCTTACTTTCACTAGGTCTCAGCATTTCGATAATGGTTTTTTCTAAAAAACAGTTCTCTGTGCTAATCATTTATGCTTTGTGACATTATTACCGTCCAAGG CCCTCTCGGTTATTGTTTTTTCCTCGTTATTCGTCTCAGCTTATGTTCACTGG TGTGTTATTTATTTTACTTTGTATTTTTGTTATGTCTCTTC TTTTCGCAATGACGTACGAATGTATATATATACATCTG] [-] EMBL CD076797 [ CTTCAAATCAAATCCATCAAGTTCAATCCTCTCCACAAAAAGAACATTTGTCATACCATAGTCTTTCTACATGTAGTGAATAAGTGTATGATACATTACTTGTTTTCATTTCAACGAATCTATGTTGTTATAATCCTTATTTACAAATCAATCTGTATTCATTCTGTACATAGGTGTATAGTTTGTGTGTACATACATGTATATTCAGTTGATTTTAGTCGAACAATAAAATTACATTTCGAAACAATTTCCTCTTAACTACCCATTCATTTACAACCTGGTATTCACAATTCTCTCCTATTTTTTGTTATGTATAGTTTTTGTTTTGTTTGGTTTAAATAGTTCTGCTTACTTTCACTAGGTCTCAGCATTTCGATAATGGTTTTTTCTAAAAAACAGTTCTCTGTGCTAATCATTTATGCTTTGTGACATTATTACCGTCCAAGG CCCTCTCGGTTATTGTTTTTTCCTCGTTATTCGTCTCAGCTTATGTTCACTGG TGTGTTATTTATTTTACTTTGTATTTTTGTTATGTCTCTTC TTTTCGCAATGACGTACGAATGTATATATATACATCTG] consensusID : consensus_8837#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [TGAAGAACCCAAAAATGCTATGCCTGCTTCTCCTAGTGTTGAAGGTTGTGACCAAGTGTCATCAAGTGTAGTCGACAGTCCTCTTGGCTTGGCAGAAGTTGTTGTAAGAGTCGGCCGTCGTGTAATAGCAGCAACATTGGGTAGTACCAATAATAACTGTTCTGAGGTTGCTCGCGCTTTAGATCGAATAAAATATCATCATTCACCTCAAAGTATTCAACCACTTGAAGGAAAACCACCTGTACGTTGTCTTAAGCGTTCACTTACCACTAATTCATTGGATATTCGTCATCAGTTAATTCGCCCAAAAGTTTTTAATCCATTTTGTGGTGGCAATAGTTATTCACAAAATACACCCTCAATAAGAAGAGTCCGAACAAATTCTAACACTGATTTATTGTCCGTTGATAATACCGTTAATAGTATTCTGGCGCCAACACCATCCACTACTTCAAATCAAATCCATCAAGTTCAATCCTCTCCACAAAAAGAACATTTGTCATACCATAGTCTTTCTACATGTAGTGAATAAGTGTATGATACATTACTTGTTTTCATTTCAACGAATCTATGTTGTTATAATCCTTATTTACAAATCAATCTGTATTCATTCTGTACATAGGTGTATAGTTTGTGTGTACATACATGTATATTCAGTTGATT] [+] EMBL CD080508 [TGAAGAACCCAAAAATGCTATGCCTGCTTCTCCTAGTGTTGAAGGTTGTGACCAAGTGTCATCAAGTGTAGTCGACAGTCCTCTTGGCTTGGCAGAAGTTGTTGTAAGAGTCGGCCGTCGTGTAATAGCAGCAACATTGGGTAGTACCAATAATAACTGTTCTGAGGTTGCTCGCGCTTTAGATCGAATAAAATATCATCATTCACCTCAAAGTATTCAACCACTTGAAGGAAAACCACCTGTACGTTGTCTTAAGCGTTCACTTACCACTAATTCATTGGATATTCGTCATCAGTTAATTCGCCCAAAAGTTTTTAATCCATTTTGTGGTGGCAATAGTTATTCACAAAATACACCCTCAATAAGAAGAGTCCGAACAAATTCTAACACTGATTTATTGTCCGTTGATAATACCGTTAATAGTATTCTGGCGCCAACACCATCCACTACTTCAAATCAAATCCATCAAGTTCAATCCTCTCCACAAAAAGAACATTTGTCATACCATAGTCTTTCTACATGTAGTGAATAAGTGTATGATACATTACTTGTTTTCATTTCAACGAATCTATGTTGTTATAATCCTTATTTACAAATCAATCTGTATTCATTCTGTACATAGGTGTATAGTTTGTGTGTACATACATGTATATTCAGTTGATT] consensusID : consensus_8837#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence [ACAAACATGTATATTCAGTTGATTTTAGTCGAACAATAAAATTACATTTTGAAACAATTTCCTTTTAACTACCCCTTCATTTACAACCTGGTATTCCCAATTTTCTCCCATTTTTTGTTAAGAAAAGTTTTTGTTTTGTTTGGTTTAAAAAGTTTTGCTTACTTTCCCTAGGTTTCAGCATTTCGATAATGGTTTTTTTTAAAAAACAGTTTTCTGTGGTAATCATTTATGCTTTGTGACATTATTACCGTCCAAGGCCCTCTCGGGTATTGTTTTTTCCCCGTTATTTGTTTCAGCTTATGTTCCCTGGGGGGTTATTTATTTTACTTTGTATTTTTGTTAAGTTTTTTCTTTTCCCAAAGACGTACGAATGTATATAAAAACATCTG] [-] EMBL CD075890 [ACAAACATGTATATTCAGTTGATTTTAGTCGAACAATAAAATTACATTTTGAAACAATTTCCTTTTAACTACCCCTTCATTTACAACCTGGTATTCCCAATTTTCTCCCATTTTTTGTTAAGAAAAGTTTTTGTTTTGTTTGGTTTAAAAAGTTTTGCTTACTTTCCCTAGGTTTCAGCATTTCGATAATGGTTTTTTTTAAAAAACAGTTTTCTGTGGTAATCATTTATGCTTTGTGACATTATTACCGTCCAAGGCCCTCTCGGGTATTGTTTTTTCCCCGTTATTTGTTTCAGCTTATGTTCCCTGGGGGGTTATTTATTTTACTTTGTATTTTTGTTAAGTTTTTTCTTTTCCCAAAGACGTACGAATGTATATAAAAACATCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8837#0 ATTTCGGCACGAGGACGCGCTTTAGATCGAATAAAATATCATCATTCATCTCAAAGTATT 60 consensus_8837#2 ------------------------------------------------------------ consensus_8837#1 ------------------------------------------------------------ consensus_8837#0 CAACCACTTGAAGGAAAACCACCTGTACGTTGTCTTAAGCGTTCACTTACCACTAATTCA 120 consensus_8837#2 ------------------------------------------------------------ consensus_8837#1 ------------------------------------------------------------ consensus_8837#0 TTGGATATTCGTCATCAGTTAATTCGCCCAAAAGTTTTTAATCCATTTTGTGGTGGCAAT 180 consensus_8837#2 ------------------------------------------------------------ consensus_8837#1 ------------------------------------------------------------ consensus_8837#0 AGTTATTCACAAAATACACCCTCAATAAGAAGAGTCCGAACAAATTCTAACACTGATTTA 240 consensus_8837#2 ------------------------------------------------------------ consensus_8837#1 ------------------------------------------------------------ consensus_8837#0 TTGTCCGTTGATAATACCGTTAATAGTATTCTGGCGCCAACACCATCCACTACTTCAAAT 300 consensus_8837#2 ------------------------------------------------------------ consensus_8837#1 ------------------------------------------------------------ consensus_8837#0 CAAATCCATCAAGTTCAATCCTCTCCACAAAAAGAACATTTGTCATACCATAGTCTTTCT 360 consensus_8837#2 ------------------------------------------------------------ consensus_8837#1 ------------------------------------------------------------ consensus_8837#0 ACATGTAGTGAATAAGTGTATGATACATTACTTGTTTTCATTTCAACGAATCTATGTTGT 420 consensus_8837#2 ------------------------------------------------------------ consensus_8837#1 -------------------------------TGAAGAACCCAAAAATGCTATGCCTGCTT 29 consensus_8837#0 TATAATCCTTATTTACAAATCAATCTGTATTCATTCTGTACATAGGTGTATAGTTTGTGT 480 consensus_8837#2 ------------------------------------------------------------ consensus_8837#1 CTCCTAGTGTTGAAGGTTGTGACCAAGTGTCATCAAGTGTAGTCGACAGTCCTCTTGGCT 89 consensus_8837#0 GTACATACATGTATATTC-AGTTGATTTTAGTCGAA---CAATAAAATTACAT----TTC 532 consensus_8837#2 --ACAAACATGTATATTC-AGTTGATTTTAGTCGAA---CAATAAAATTACAT----TTT 50 consensus_8837#1 TGGCAGAAGTTGTTGTAAGAGTCGGCCGTCGTGTAATAGCAGCAACATTGGGTAGTACCA 149 ** * * * * *** * * ** ** ** ** *** * consensus_8837#0 GAAACAATTTCCTCTTAACTACCC---ATTCATTTACAACCTGGTATTCACAATTCTCTC 589 consensus_8837#2 GAAACAATTTCCTTTTAACTACCC---CTTCATTTACAACCTGGTATTCCCAATTTTCTC 107 consensus_8837#1 ATAATAACTGTTCTGAGGTTGCTCGCGCTTTAGATCGAATAAAATATCATCATTCACCTC 209 ** ** * * * * ** * * ** *** ** * *** consensus_8837#0 CTATTTTTTG-----TTATGTATAGTTTTTGTTTTGTTTGGTTTAAATAGTTCTGCTTAC 644 consensus_8837#2 CCATTTTTTG-----TTAAGAAAAGTTTTTGTTTTGTTTGGTTTAAAAAGTTTTGCTTAC 162 consensus_8837#1 AAAGTATTCAACCACTTGAAGGAAAACCACCTGTACGTTGTCTTAAGCG--TTCACTTAC 267 * * ** ** * * * *** **** * ***** consensus_8837#0 T-----TTCACTAGGTCTCAGCATTTCGATAATGGTTTTT----TCTAAAAAACAGTTCT 695 consensus_8837#2 T-----TTCCCTAGGTTTCAGCATTTCGATAATGGTTTTT----TTTAAAAAACAGTTTT 213 consensus_8837#1 CACTAATTCATTGGATATTCGTCATCAGTTAATTCGCCCAAAAGTTTTTAATCCATTTTG 327 *** * * * * * * * **** * * ** ** ** consensus_8837#0 CTGTGCTAAT---CATTTATGCTTTGTGACATTATTACC----GTCCAAGGCCCTCTCGG 748 consensus_8837#2 CTGTGGTAAT---CATTTATGCTTTGTGACATTATTACC----GTCCAAGGCCCTCTCGG 266 consensus_8837#1 TGGTGGCAATAGTTATTCACAAAATACACCCTCAATAAGAAGAGTCCGAACAAATTCTAA 387 *** *** *** * * * * * ** **** * * consensus_8837#0 TTATTGTTTTTTCCTCGTTATTCGTCTCAGCTTATGTTCACTGGTGTGTTATTTATTT-- 806 consensus_8837#2 GTATTGTTTTTTCCCCGTTATTTGTTTCAGCTTATGTTCCCTGGGGGGTTATTTATTT-- 324 consensus_8837#1 CACTGATTTATTGTCCGTTGATAATACCGTTAATAGTATTCTGGCGCCAACACCATCCAC 447 * *** ** **** * * * ** **** * ** consensus_8837#0 TACTTTGTATT---TTTGTTATGTCTCTTCTTTTCGCAATGACGTACGAATGT-ATATAT 862 consensus_8837#2 TACTTTGTATT---TTTGTTAAGTTTTTTCTTTTCCCAAAGACGTACGAATGT-ATATAA 380 consensus_8837#1 TACTTCAAATCAAATCCATCAAGTTCAATCCTCTCCACAAAAAGAACATTTGTCATACCA 507 ***** ** * * * ** ** * ** * * * ** *** *** consensus_8837#0 ATACATCTG--------------------------------------------------- 871 consensus_8837#2 AAACATCTG--------------------------------------------------- 389 consensus_8837#1 TAGTCTTTCTACATGTAGTGAATAAGTGTATGATACATTACTTGTTTTCATTTCAACGAA 567 * * consensus_8837#0 ------------------------------------------------------------ consensus_8837#2 ------------------------------------------------------------ consensus_8837#1 TCTATGTTGTTATAATCCTTATTTACAAATCAATCTGTATTCATTCTGTACATAGGTGTA 627 consensus_8837#0 ------------------------------------ consensus_8837#2 ------------------------------------ consensus_8837#1 TAGTTTGTGTGTACATACATGTATATTCAGTTGATT 663 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||