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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8840#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 843 fasta sequence
[CGAAATTTCCAGTATTTGTAGAATTTCTTCTTTCGGCATAACCTTGGCACTGTCCGTACCCATATTATATACATATATATATGCAATCCTCATTTAGGTTAATCATTTCGATTCTATATAAGAAAGAACCCTTTGCATATTTCATCATTACAAATCACTTCCCCACCCTCTTAACAGTCCCATTGTACGTTTTAGTTGCTCAAATTGTTTCTAGCAACTTCATGGGAACTGTGTTGTAAACTATACTCTTGTCATTAGTTTTTTGTGTGCTTCCATTTTCACTAAAATCATTTTTCGTTTGCGCGTGTTTGTACATCTACGAACATATAACCACTACTGCGCATGCCGTTCCGTCTATTCTTGTGTTAGCAAGTGAAATAGAGGCAGTCAGTTGTGTTTTAGAATTTTTTAAGATTTAACAACTATTTGCTAAAAAGATTATTACTATTATCATCATTATCAATACTATCACTAACTGACAGCTGATGTCTTTTTTTTCATTATTCCTATTTCTGCAAAACCACTGAACAACTCATATTTCAACAATAGAATAAGACTTATTCAATGGTCATGTTATGCATTTTAAAATTATTTGATTTGTTGAGCATTACATTAAAACTAATGTCATAAATAGAAAATATGTGATCT-AATGCCAATTTATGCGACTCATGTTTATACTTTGTTGNTGTAAGTAAATATTCACATGAATGCGAAAATGCCTTAATTCCACTGCTATCTCGTTNCTTTATT-ATCCATANCAT-AAC-ACCCATGATAGTGGTGT-ACTTACTAT-AACTATTTGAAANT-ATNGGNNCAG-TNTTG-TCCTAA-TTTCATAT-TATAGAGAGT]
[+] EMBL CD082144 [CGAAATTTCCAGTATTTGTAGAATTTCTTCTTTCGGCATAACCTTGGCACTGTCCGTACCCATATTATATACATATATATATGCAATCCTCATTTAGGTTAATCATTTCGATTCTATATAAGAAAGAACCCTTTGCATATTTCATCATTACAAATCACTTCCCCACCCTCTTAACAGTCCCATTGTACGTTTTAGTTGCTCAAATTGTTTCTAGCAACTTCATGGGAACTGTGTTGTAAACTATACTCTTGTCATTAGTTTTTTGTGTGCTTCCATTTTCACTAAAATCATTTTTCGTTTGCGCGTGTTTGTACATCTACGAACATATAACCACTACTGCGCATGCCGTTCCGTCTATTCTTGTGTTAGCAAGTGAAATAGAGGCAGTCAGTTGTGTTTTAGAATTTTTTAAGATTTAACAACTATTTGCTAAAAAGATTATTACTATTATCATCATTATCAATACTATCACTAACTGACAGCTGATGTCTTTTTTTTCATTATTCCTATTTCTGCAAAACCACTGAACAACTCATATTTCAACAATAGAATAAGACTTATTCAATGGTCATGTTATGCATTTTAAAATTATTTGATTTGTTGAGCATTACATTAAAACTAATGTCATAAATAGAAAATATGTGATCTAAATGCC ATTTATGCGACTCATGTTTATACTTTGTTGNTGTAAGTAAATATTCACATGAATGCGAAAATGCCTTAANTNCACTGCTATCTCGTTNCTTTATT ATCCATANCAT AAC ACCCATGATAGTGGTGT ACTTACTAT AACTATTTGAAANT ATNGGNNCAG TNTTG TCCTAA TTTCATAT TATAG ]
[+] EMBL CD079017 [ TTAGGTTAATCATTTCGATTCTATATAAGAAAGAACCCTTTGCATATTTCATCATTACAAATCACTTCCCCACCCTCTTAACAGTCCCATTGTACGTTTTAGTTGCTCAAATTGTTTCTAGCAACTTCATGGGAACTGTGTTGTAAACTATACTCTTGTCATTAGTTTTTTGTGTGCTTCCATTTTCACTAAAATCATTTTTCGTTTGCGCGTGTTTGTACATCTACGAACATATAACCACTACTGCGCATGCCGTTCCGTCTATTCTTGTGTTAGCAAGTGAAATAGAGGCAGTCAGTTGTGTTTTAGAATTTTTTAAGATTTAACAACTATTTGCTAAAAAGATTATTACTATTATCATCATTATCAATACTATCACTAACTGACAGCTGATGTCTTTTTTTTCATTATTCCTATTTCTGCAAAACCACTGAACAACTCATATTTCAACAATAGAATAAGACTTATTCAATGGTCATGTTATGCATTTTAAAATTATTTGATTTGTTGAGCATTACATTANAACTAATGTCATANATAGAAAATATGTGATCT AATGCCAATTTATGCGACTCATGTTTATACTTTGNTGNTG ]
[+] EMBL CD078687 [ ATCATTACAAATCACTTCCCCACCCTCTTAACAGTCCCATTGTACGTTTTAGTTGCTCAAATTGTTTCTAGCAACTTCATGGGAACTGTGTTGTAAACTATACTCTTGTCATTAGTTTTTTGTGTGCTTCCATTTTCACTAAAATCATTTTTCGTTTGCGCGTGTTTGTACATCTACGAACATATAACCACTACTGCGCATGCCGTTCCGTCTATTCTTGTGTTAGCAAGTGAAATAGAGGCAGTCAGTTGTGTTTTAGAATTTTTTAAGATTTAACAACTATTTGCTAAAAAGATTATTACTATTATCATCATTATCAATACTATCACTAACTGACAGCTGATGTCTTTTTTTTCATTATTCCTATTTCTGCAAAACCACTGAACAACTCATATTTCAACAATAGAATAAGACTTATTCAATGGTCATGTTATGCATTTTAAAATTATTTGATTTGTTGAGCATTACATTAAAACTAATGTCATAAATAGAAAATATGTGATCT AATGCCAATTTATGCGACTCATGTTTATACTTTGTTGTTGTAAGTAAATATTCACATGAATGCGAAAATGCCCTAATTCCACTGCTATCTCGnt ]
[-] EMBL CD075762 [ CATTTTTCGTTTGCGCGTGTTTGTACATCTACGAACATATAACCACTACTGCGCATGCCGTTCCGTCTATTCTTGTGTTAGCAAGTGAAATAGAGGCAGTCAGTTGTGTTTTAGAATTTTTTAAGATTTAACAACTATTTGCTAAAAAGATTATTACTATTATCATCATTATCAATACTATCACTAACTGACAGCTGATGTCTTTTTTTTCATTATTCCTATTTCTGCAAAACCACTGAACAACTCATATTTCAACAATAGAATAAGACTTATTCAATGGTCATGTTATGCATTTTAAAATTATTTGATTTGTTGAGCATTACATTAAAACTAATGTCATAAATAGAAAATATGTGATCT AATGCCAATTTATGCGACTCATGTTTATACTTTGTTGTTGTAAGTAAATATTCACATGAATGCGAAAATGCCTTAATTCCACTGCTATCTCGTTTCTTTATTAATCCATACAATAAACAACCAATGATAGTGGTGTAACTTACTATAAACTATTTGAAAATAATTGG TCAGTTTTTGTTCCTAATTTTCATATATATTAAGAGT]
consensusID : consensus_8840#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 587 fasta sequence
[AATACTTTGTTGTTGTAAGTAAATATTCACATGAATGCGAAAATGCCTTAATTCCACTGCTATCTCGTTTCTTTATTAATCCATACAATAAACAACCAATGATAGTGGTGTAACTTACTATAAACTATTTGAAAATAATTGGTCAGTTTTTGTTCCTAATTTTCATATATATTAAGAGTTATGCACATACCCGACTACTTCTCATGTTCCACCATTTATCCCGTGTTTTACACCGTGTGATACTGCCAGAAAAATTGATGATAAATATTACTTCGAAACTTTGTTAAGTTAGGTGTCATTGTGTTTTATTTCTTGTGTGTATTTGTGTACCTACATTATCGACTATCCTTAAACAGATGTTCAAACGAATTTGGCTGTATAATTTTGTTAGCCAAAAGATTTCGTGATAATCGATAACAGCACTGTGTTACCATTCTAGACTGCGTGATTTGTTCTGTTTTCTCTGTTGATTTTGTGTGTGCTTGCTTTATCTTAACTAGTCAATTATTCCCCTAGTAACTACTATCCTTTGCCGCATTCAAATTGGTTCAGTCATTAAAATACGTCATTTCCAACTGTGTAAAAAA]
[-] EMBL CD073150 [AATACTTTGTTGTTGTAAGTAAATATTCACATGAATGCGAAAATGCCTTAATTCCACTGCTATCTCGTTTCTTTATTAATCCATACAATAAACAACCAATGATAGTGGTGTAACTTACTATAAACTATTTGAAAATAATTGGTCAGTTTTTGTTCCTAATTTTCATATATATTAAGAGTTATGCACATACCCGACTACTTCTCATGTTCCACCATTTATCCCGTGTTTTACACCGTGTGATACTGCCAGAAAAATTGATGATAAATATTACTTCGAAACTTTGTTAAGTTAGGTGTCATTGTGTTTTATTTCTTGTGTGTATTTGTGTACCTACATTATCGACTATCCTTAAACAGATGTTCAAACGAATTTGGCTGTATAATTTTGTTAGCCAAAAGATTTCGTGATAATCGATAACAGCACTGTGTTACCATTCTAGACTGCGTGATTTGTTCTGTTTTCTCTGTTGATTTTGTGTGTGCTTGCTTTATCTTAACTAGTCAATTATTCCCCTAGTAACTACTATCCTTTGCCGCATTCAAATTGGTTCAGTCATTAAAATACGTCATTTCCAACTGTGTAAAAAA]
[-] EMBL CD073468 [ ACATACCCGACTACTTCTCATGTTCCACCATTTATCCCGTGTTTTACACCGTGTGATACTGCCAGAAAAATTGATGATAAATATTACTTCGAAACTTTGTTAAGTTAGGTGTCATTGTGTTTTATTTCTTGTGTGTATTTGTGTACCTACATTATCGACTATCCTTAAACAGATGTTCAAACGAATTTGGCTGTATAATTTTGTTAGCCAAAAGATTTCGTGATAATCGATAACAGCACTGTGTTACCATTTTAGACGGCGTGATTTGTTCTGTTTTCTCTGTTGATTTTGTGTGTGCTTGCTTTATCTTAACTAGTCAATTATTCCCCTAGTAACTACTATCCTTTGCCGCATTCAAATTGGTTCAGTCATTAAAATACGTCATTTCCAACTGTGTAAAAAA]
consensusID : consensus_8840#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence
[TTTTTTTGTGTGCTTCCATTTTCACTAAAATCATTTTTCGTTTGCGCGTGTTTGTACATCTACGAACATATAACCACTACTGCGCATCCCGTTCCGTCTATTCTTGTGTTAGCAAGTGAAATAGAGGCAGTCAGTTGTGTTTTAGAATTTTTTAAGATTTAACAACTATTTGCTAAAAAGATTATTACTATTATCATCATTATCAATACTATCACTAACTGACAGCTGATGTCTTTTTTTTCAATATTCCTATTTCTGCAAAACACTGAACAACTCATATTTCAACAATAGAATAAGACTTATTCAATGGTCATGTTATGCATTTTAAAATATTTGATTTGTTGAGCATTACATTAAACTAATGTCATAAAAAGAAAATATGTGATCTAATGCCAATTTTTGCGCCCATGTTTATACTTTGTTGTTGTAAGAAAAATCACATGGTGCGAAATGCCTTATTCACCCTGGGACCCGGGTCTTTATTAACCCCACAAAAACAACCACGGGTGGTGGGGTACCTACT]
[+] EMBL AI559057 [TTTTTTTGTGTGCTTCCATTTTCACTAAAATCATTTTTCGTTTGCGCGTGTTTGTACATCTACGAACATATAACCACTACTGCGCATCCCGTTCCGTCTATTCTTGTGTTAGCAAGTGAAATAGAGGCAGTCAGTTGTGTTTTAGAATTTTTTAAGATTTAACAACTATTTGCTAAAAAGATTATTACTATTATCATCATTATCAATACTATCACTAACTGACAGCTGATGTCTTTTTTTTCAATATTCCTATTTCTGCAAAACACTGAACAACTCATATTTCAACAATAGAATAAGACTTATTCAATGGTCATGTTATGCATTTTAAAATATTTGATTTGTTGAGCATTACATTAAACTAATGTCATAAAAAGAAAATATGTGATCTAATGCCAATTTTTGCGCCCATGTTTATACTTTGTTGTTGTAAGAAAAATCACATGGTGCGAAATGCCTTATTCACCCTGGGACCCGGGTCTTTATTAACCCCACAAAAACAACCACGGGTGGTGGGGTACCTACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8840#0 CGAAATTTCCAGTATTTGTAGAATTTCTTCTTTCGGCATAACCTTGGCACTGTCCGTACC 60
consensus_8840#2 ------------------------------------------------------------
consensus_8840#1 ------------------------------------------------------------
consensus_8840#0 CATATTATATACATATATATATGCAATCCTCATTTAGGTTAATCATTTCGATTCTATATA 120
consensus_8840#2 ------------------------------------------------------------
consensus_8840#1 ------------------------------------------------------------
consensus_8840#0 AGAAAGAACCCTTTGCATATTTCATCATTACAAATCACTTCCCCACCCTCTTAACAGTCC 180
consensus_8840#2 ------------------------------------------------------------
consensus_8840#1 ------------------------------------------------------------
consensus_8840#0 CATTGTACGTTTTAGTTGCTCAAATTGTTTCTAGCAACTTCATGGGAACTGTGTTGTAAA 240
consensus_8840#2 ------------------------------------------------------------
consensus_8840#1 ------------------AATACTTTGTTGTTGTAAGTAAATATTCACATGAATGCGAAA 42
consensus_8840#0 CTATACTCTTGTCATTAGTTTTTTGTGTGCTTCCATTTTCACTAAAATCATTTTTCGTTT 300
consensus_8840#2 -----------------TTTTTTTGTGTGCTTCCATTTTCACTAAAATCATTTTTCGTTT 43
consensus_8840#1 ATGCCTTAATTCCACTGCTATCTCGT-TTCTTTATTAATCCATACAATAAACAACCAATG 101
* * * ** * *** * ** ** *** * * *
consensus_8840#0 GCGCGTGTTTGTACATCTACGAAC-ATATAACCACTACTGCGCATGCCGTTCCGTCTATT 359
consensus_8840#2 GCGCGTGTTTGTACATCTACGAAC-ATATAACCACTACTGCGCATCCCGTTCCGTCTATT 102
consensus_8840#1 ATAGTGGTGTAACTTACTATAAACTATTTGAAAATAATTGGTCAGTTTTTGTTCCTAATT 161
** * *** *** ** * * * * ** ** * ***
consensus_8840#0 CTTGTGT-TAGCAAGTGAAATAGAGGCAGTCAGTTG-------TGTTTTAGAATTTTTTA 411
consensus_8840#2 CTTGTGT-TAGCAAGTGAAATAGAGGCAGTCAGTTG-------TGTTTTAGAATTTTTTA 154
consensus_8840#1 TTCATATATATTAAGAGTTATGCACATACCCGACTACTTCTCATGTTCCACCATTTATCC 221
* * * ** *** * ** * * * * **** * **** *
consensus_8840#0 AG-ATTTAACAAC-TAT----TTGCTAAAAAGATTATTACTATTATCATCATTATCAATA 465
consensus_8840#2 AG-ATTTAACAAC-TAT----TTGCTAAAAAGATTATTACTATTATCATCATTATCAATA 208
consensus_8840#1 CGTGTTTTACACCGTGTGATACTGCCAGAAAAATTGATG--ATAAATATTACT-TCGAAA 278
* *** *** * * * *** * *** *** * ** * ** * * ** * *
consensus_8840#0 CTATCACTAACTGACAGCTGATGTCTTTTTTTTCATTATTCCTATTTCTGCAAAACCACT 525
consensus_8840#2 CTATCACTAACTGACAGCTGATGTCTTTTTTTTCAATATTCCTATTTCTGCAAAAC-ACT 267
consensus_8840#1 CTTTGTTAAGTTAGGTGTCATTGTGTTTTATTTC-TTGTGTGTATTTGTGTACCTACATT 337
** * * * * *** **** **** * * ***** ** * * *
consensus_8840#0 GAACAACTCATATTTCAACAATAGAATAAGACTTATTCAATGGTCATGTTATGCATTTTA 585
consensus_8840#2 GAACAACTCATATTTCAACAATAGAATAAGACTTATTCAATGGTCATGTTATGCATTTTA 327
consensus_8840#1 -ATCGACT-ATCCTTAAACAG-ATGTTCAAACGAATTTGGCTGTATAATTTTGTTAGCCA 394
* * *** ** ** **** * * * ** *** ** ** ** *
consensus_8840#0 AAATTATTTGATTTGTTGAGCATT-ACATTAAAACTAATGTCATAAATAGAAAATATGTG 644
consensus_8840#2 AAAT-ATTTGATTTGTTGAGCATT-ACATTAAA-CTAATGTCATAAAAAGAAAATATGTG 384
consensus_8840#1 AAA------GATTTCGTGATAATCGATAACAGCACTG-TGTTACCATTCTAGACTGCGTG 447
*** ***** *** ** * * * ** *** * * * * * ***
consensus_8840#0 ATCTAATGCCAATTTATGCGACTCATGTTTATACTTTGTTGNTGTAAGTAAATATTCACA 704
consensus_8840#2 ATCTAATGCCAATTTTTGCG-CCCATGTTTATACTTTGTTGTTGTAAGAAAAA--TCACA 441
consensus_8840#1 ATTTG-TTCTGTTTTCTCTG--TTGATTTTGTGTGTGCTTGCTTTATCTTAACTAGTCAA 504
** * * * *** * * *** * * *** * ** ** *
consensus_8840#0 TGAATGCGAAAATGCCTTAATTCCACTGCTATCTCGTTNCTTTATTATCCATANCATAAC 764
consensus_8840#2 TGG-TGCGAAA-TGCCTTATTCACCCTGGGACC-CGGGTCTTTATTAACCCCACAAAAAC 498
consensus_8840#1 TTATTCCCCTAGTAACTACTATCCTTTGCCGCATTCAAATTGGTTCAGTCATTAAAATAC 564
* * * * * ** * ** * * * * * **
consensus_8840#0 ACCCATGA-TAGTGGTGTACTTACTATAACTATTTGAAANTATNGGNNCAGTNTTGTCCT 823
consensus_8840#2 AACCACGGGTGGTGGGGTACCTACT----------------------------------- 523
consensus_8840#1 G-TCATTTCCAACTGTGTAAAAAA------------------------------------ 587
** * *** *
consensus_8840#0 AATTTCATATTATAGAGAGT 843
consensus_8840#2 --------------------
consensus_8840#1 --------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||