cluster # 8846

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8846 cluster # 8846 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8846#0 length = 1020 sequences # 6

consensus_8846#1 length = 399 sequences # 1

consensusID : consensus_8846#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1020
fasta sequence

                              [TNTACGTTTAATAGGTATAGGGGATATGCCAAGATTCTTTGTATATTCATCAGATTGATCAGCAGTATGAGACAGANNATTGGAAGGAGACACGCTGTCCAGGAGATTAGGTTCTAATTTGCTTAACTTCTGTGGTCTAACTGAGTCATTAGAATTCGTGTTTGATTTTGTGCTTGAAGACGCAACATTAATAGAAGACTCATTTGGTAAGACTATTACATTGGCTGCGATTTCAGAAGATAAATTTGAGTTTTCACATTGAGGTATGGCACCAACAACGATTGCTGGAGAAAAGGAGTTTGAAATTTCAGTTCTTAAAGGCACTTCTTTCGGTGAGAAATCAGGCAACTTTTCAAGTGTTAAGTTTAAAGGTAACACATTAGATTGAGGGGATTCATTTGGAAGTGAACTCTGGACAGAAACAGCAGGGCTACTGGTTGAATGAATGTTGCTTATCACAGTTGAAAAACCAGGTGAAGTTGTGACAACGCTATCCGCAATAGAAAATTGCAGTGTAACTGAATTACCTGATACAGAGTCTGGAACTTTGGTATCTAAATATGGACATGTTGTGAGAGAATAAGATGTAACAATGGTAGAGGTATTATTTGAAGAGAATTCACTTTTGACAGTAGAATCTGGAGAAAGACGTTGACCTGAGTTACGATTAGGAGGATTGTAAGCAGAAACCGAGGCCACTGTTGCACTAGAATCGGGGTTTTCTGAATCAACAGAAAAAGGAGAACTGGACATTAATATATTAGTGGAACTTAGACGTTCATGTGCTCTAATAGTATCTTTCTTAAGATTACTATCAGCATATGGGCATCCTGAAATACGCTGATGAGAGAAATAACGAGGTCCTTTGATATGCCCGTAACCTTTGCAACCGGGAGTTGGGCACCCGCCAAATGGGTTGGCAGTCCCACTACAGCTGAGAGAACTGGCAGAAGAATTAGAATAAGAATCCATTAGGTTTCCATTTAAATCCAATTCAGAATCATATCCCGGTGGGACTTG]

[-] EMBL CD183305             [TNTACGTTTAATAGGTATAGGGGATATGCCAAGATTCTTTGTATATTCATCAGATTGATCAGCAGTATGAGACAGANNATTGGAAGGAGACACGCTGTCCAGGAGATTAGGTTCTAATTTGCTTAACTTCTGTGGTCTAACTGAGTCATTAGAATTCGTGTTTGATTTTGTGCTTGAAGACGCAACATTAATAGAAGACTCATTTGGTAAGACTATTACATTGGCTGCGATTTCAGAAGATAAATTTGAGTTTTCACATTGAGGTATGGCACCAACAACGATTGCTGGAGAAAAGGAGTTTGAAATTTCAGTTCTTAAAGGCACTTCTTTCGGTGAGAAATCAGGCAACTTTTCAAGTGATAAGTTTAAAGGTAACACATTAGATTGAGGGGATTCATTTGGAAGTGAACTCTGGACAGAAACAGCAGGGCTACTGGTTGAATGAATGTTGCTTATCACAGTTGAAAAACCAGGTGAAGTTGTGACAACGCTATCCGCAATAGAAAATTGCAGTGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD065262             [                         ATGCCAAGATTCTTCGTATATTCATCAGATTGATCAGCAGTATGAGACAGAAAATTGGAAGGAGACACGCTGTCCAGGAGATTAGGTTCTAATTTGCTTAACTTCTGTGGTCTAACTGAGTCATTAGAATTCGTGTTTGATTTTGTGCTTGAAGACGCAACATTAATAGAAGACTCATTTGGTAAGACTATTACATTGGCTGCGACTTCAGAAGATAAATTTGAGTTTTCACATTGAGGTATGGCACCAACAACGATTGCTGGAGAAAAGGAGTTTGAAATTTCAGTTCTTAAAGGCACTTCTTTCGGTGAGAAATCAGGCAACTTTTCAAGTGTTAAGTTTAAAGGTAACACATTAGATTGAGGGGATTCATTTGGAAGTGAACTCTGGACAGAAACAGCAGGGCTACTGGTTGAATGAATGTTGCTTATCACAGTTGAAAAACCAGGTGAAGTTGTGACAACGCTATCCGCAATAGAAAATTGCAGTGTAACTGAATTACCTGATACAGAGTCTGGAACTTTGGTATCTAAATATGGACATGTTGTGAGAGAATAAGATGTAACAATGGTAGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD067248             [                                                                                                                                                                                                                                                       GAGTTTTCACATTGAGGTATGGCACCAACAACGATTGCTGGAGAAAAGGAGTTTGAAATTTCAGTTCTTAAAGGCACTTCTTTCGGTGAGAAATCAGGCAACTTTTCAAGTGTTAAGTTTAAAGGTAACACATTAGATTGAGGGGATTCATTTGGAAGTGAACTCTGGACAGAAACAGCAGGGCTACTGGTTGAATGAATGTTGCTTATCACAGTTGAAAAACCAGGTGAAGTTGTGACAACGCTATCCGCAGTAGAAAATTGCAGTGTAACTGAATTACCTGATACAGAGTCTGGAACTTTGGTATCTAAATATGGACATGTTGTGAGAGAATAAGATGTAACAATGGTAGAGGTATTATTTGAAGAGAATTCACTTTTGACAGTAGAATCTGGAGAAAGACGTTGACCTGAGT                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD111597             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TGTGACAACGCTATCCGCAATAGAAAATTGCAGTGTAACTGAATTACCTGATACAGAGTCTGGAACTTTGGTATCTAAATATGGACATGTTGTGAGAGAATAAGATGTAACAATGGTAGAGGTATTATTTGAAGAGAATTCACTTTTGACAGTAGAATCTGGAGAAAGACGTTGACCTGAGTTACGATTAGGAGGATTGTAAGCAGAAACCGAGGCCACTGTTGCACTAGAATCGGGGTTTTCTGAATCAACAGAAAAAGGAGAACTGGACATTAATATATTAGTGGAACTTAGACGTTCATGTGCTCTAATAGTATCTTTCTTAAGATTACTATCAGCATATGGGCATCCTGAAATACGCTGATGAGAGAAATAACGAGGTCCTTTGATATGCCCGTAACCTTTGCAACCGGGAGTTGGGCACCC                                                                                                                  ]
[+] EMBL CD111170             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GACAACGCTATCCGCAATAGAAAATTGCAGTGTAACTGAATTACCTGATACAGAGTCTGGAACTTTGGTATCTAAATATGGACATGTTGTGAGAGAATAAGATGTAACAATGGTAGAGGTATTATTTGAAGAGAATTCACTTTTGACAGTAGAATCTGGAGAAAGACGTTGACCTGAGTTACGATTAGGAGGATTGTAAGCAGAAACCGAGGCCACTGTTGCACTAGAATCGGGGTTTTCTGAATCAACAGAAAAAGGAGAACTGGACATTAATATATTAGTGGAACTTAGACGTTCATGTGCTCTAATAGTATCTTTCTTAAGATTACTATCAGCATATGGGCATCCTGAAATACGCTGATGAGAGAAATAACGAGGTCCTTTGATATGCCCGTCACCTTTGCAACCGGGAGTTGGGCACCC                                                                                                                  ]
[+] EMBL CD135530             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GAATAAGATGTAACAATGGTAGAGGTATTATTTGAAGAGAATTCACTTTTGACAGTAGAATCTGGAGAAAGACGTTGACCTGAGTTACGATTAGGAGGATTGTAAGCAGAAACCGAGGCCACTGTTGCACTAGAATCGGGGTTTTCTGAATCAACAGAAAAAGGAGAACTGGACATTAATATATTAGTGGAACTTAGACGTTCATGTGCTCTAATAGTATCTTTCTTAAGATTACTATCAGCATATGGGCATCCTGAAATACGCTGATGAGAGAAATAACGAGGTCCTTTGATATGCCCGTAACCTTTGCAACCGGGAGTTGGGCACCCGCCAAATGGGTTGGCAGTCCCACTACAGCTGAGAGAACTGGCAGAAGAATTAGAATAAGAATCCATTAGGTTTCCATTTAAATCCAATTCAGAATCATATCCCGGTGGGACTTG]




>consensus_8846#0
TNTACGTTTAATAGGTATAGGGGATATGCCAAGATTCTTTGTATATTCATCAGATTGATC
AGCAGTATGAGACAGANNATTGGAAGGAGACACGCTGTCCAGGAGATTAGGTTCTAATTT
GCTTAACTTCTGTGGTCTAACTGAGTCATTAGAATTCGTGTTTGATTTTGTGCTTGAAGA
CGCAACATTAATAGAAGACTCATTTGGTAAGACTATTACATTGGCTGCGATTTCAGAAGA
TAAATTTGAGTTTTCACATTGAGGTATGGCACCAACAACGATTGCTGGAGAAAAGGAGTT
TGAAATTTCAGTTCTTAAAGGCACTTCTTTCGGTGAGAAATCAGGCAACTTTTCAAGTGT
TAAGTTTAAAGGTAACACATTAGATTGAGGGGATTCATTTGGAAGTGAACTCTGGACAGA
AACAGCAGGGCTACTGGTTGAATGAATGTTGCTTATCACAGTTGAAAAACCAGGTGAAGT
TGTGACAACGCTATCCGCAATAGAAAATTGCAGTGTAACTGAATTACCTGATACAGAGTC
TGGAACTTTGGTATCTAAATATGGACATGTTGTGAGAGAATAAGATGTAACAATGGTAGA
GGTATTATTTGAAGAGAATTCACTTTTGACAGTAGAATCTGGAGAAAGACGTTGACCTGA
GTTACGATTAGGAGGATTGTAAGCAGAAACCGAGGCCACTGTTGCACTAGAATCGGGGTT
TTCTGAATCAACAGAAAAAGGAGAACTGGACATTAATATATTAGTGGAACTTAGACGTTC
ATGTGCTCTAATAGTATCTTTCTTAAGATTACTATCAGCATATGGGCATCCTGAAATACG
CTGATGAGAGAAATAACGAGGTCCTTTGATATGCCCGTAACCTTTGCAACCGGGAGTTGG
GCACCCGCCAAATGGGTTGGCAGTCCCACTACAGCTGAGAGAACTGGCAGAAGAATTAGA
ATAAGAATCCATTAGGTTTCCATTTAAATCCAATTCAGAATCATATCCCGGTGGGACTTG

consensusID : consensus_8846#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 399
fasta sequence

                              [CAGAAGTGTATTTCCTAGGCCGACCTCGTTTACGTTTAATAGGTATAGGGGATATGCCAAGATTCTTTGTATATTCATCAGATTGATCAGCAGTATGAGACAGAAAATTGGAAGGAGACACGCTGTCCAGGAGATTAGGTTCTAATTTGCTTAACTTCTGTGGTCTAACTGAGTCATTAGAATTCGTGTTTGATTTTGTGCTTGAAGACGCAACATTAATAGAAGACTCATTTGGTAAGACTATTACATTGGCTGCGATTTCAGAAGATAAATTTGAGTTTTCACATTGAGGTATGGCACATAAAGAAAAACCCCGTCTATTTAGTAAACATTCGTCTGATGACTCTGATCGAAGAATGGCAATCTTATGACTGTCTCACACCCATGACCAGAAAAATA]

[-] EMBL CD179209             [CAGAAGTGTATTTCCTAGGCCGACCTCGTTTACGTTTAATAGGTATAGGGGATATGCCAAGATTCTTTGTATATTCATCAGATTGATCAGCAGTATGAGACAGAAAATTGGAAGGAGACACGCTGTCCAGGAGATTAGGTTCTAATTTGCTTAACTTCTGTGGTCTAACTGAGTCATTAGAATTCGTGTTTGATTTTGTGCTTGAAGACGCAACATTAATAGAAGACTCATTTGGTAAGACTATTACATTGGCTGCGATTTCAGAAGATAAATTTGAGTTTTCACATTGAGGTATGGCACATAAAGAAAAACCCCGTCTATTTAGTAAACATTCGTCTGATGACTCTGATCGAAGAATGGCAATCTTATGACTGTCTCACACCCATGACCAGAAAAATA]




>consensus_8846#1
CAGAAGTGTATTTCCTAGGCCGACCTCGTTTACGTTTAATAGGTATAGGGGATATGCCAA
GATTCTTTGTATATTCATCAGATTGATCAGCAGTATGAGACAGAAAATTGGAAGGAGACA
CGCTGTCCAGGAGATTAGGTTCTAATTTGCTTAACTTCTGTGGTCTAACTGAGTCATTAG
AATTCGTGTTTGATTTTGTGCTTGAAGACGCAACATTAATAGAAGACTCATTTGGTAAGA
CTATTACATTGGCTGCGATTTCAGAAGATAAATTTGAGTTTTCACATTGAGGTATGGCAC
ATAAAGAAAAACCCCGTCTATTTAGTAAACATTCGTCTGATGACTCTGATCGAAGAATGG
CAATCTTATGACTGTCTCACACCCATGACCAGAAAAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8846#0      ----------------------------TNTACGTTTAATAGGTATAGGGGATATGCCAA 32
consensus_8846#1      CAGAAGTGTATTTCCTAGGCCGACCTCGTTTACGTTTAATAGGTATAGGGGATATGCCAA 60
                                                  * ******************************

consensus_8846#0      GATTCTTTGTATATTCATCAGATTGATCAGCAGTATGAGACAGANNATTGGAAGGAGACA 92
consensus_8846#1      GATTCTTTGTATATTCATCAGATTGATCAGCAGTATGAGACAGAAAATTGGAAGGAGACA 120
                      ********************************************  **************

consensus_8846#0      CGCTGTCCAGGAGATTAGGTTCTAATTTGCTTAACTTCTGTGGTCTAACTGAGTCATTAG 152
consensus_8846#1      CGCTGTCCAGGAGATTAGGTTCTAATTTGCTTAACTTCTGTGGTCTAACTGAGTCATTAG 180
                      ************************************************************

consensus_8846#0      AATTCGTGTTTGATTTTGTGCTTGAAGACGCAACATTAATAGAAGACTCATTTGGTAAGA 212
consensus_8846#1      AATTCGTGTTTGATTTTGTGCTTGAAGACGCAACATTAATAGAAGACTCATTTGGTAAGA 240
                      ************************************************************

consensus_8846#0      CTATTACATTGGCTGCGATTTCAGAAGATAAATTTGAGTTTTCACATTGAGGTATGGCAC 272
consensus_8846#1      CTATTACATTGGCTGCGATTTCAGAAGATAAATTTGAGTTTTCACATTGAGGTATGGCAC 300
                      ************************************************************

consensus_8846#0      CAACAACGATTGCTGGAGAAAAGGAGTTTGAAATTTCAGTTCTTAAAGGCACTTCTTTCG 332
consensus_8846#1      --ATAA--------AGAAAAACCCCGTCT-ATTTAGTAAACATTCGTCTGATGACTCTGA 349
                        * **         ** ***    ** * *  *   *    **      *   ** *  

consensus_8846#0      GTGAGAAATCAGGCAACTTTTCAAGTGTT--AAGTTTAAAGGTAACACATTAGATTGAGG 390
consensus_8846#1      TCGAAGAAT--GGCAATCTTATGACTGTCTCACACCCATGACCAGAAAAATA-------- 399
                        **  ***  *****  **   * ***   *     *     *  * * **        

consensus_8846#0      GGATTCATTTGGAAGTGAACTCTGGACAGAAACAGCAGGGCTACTGGTTGAATGAATGTT 450
consensus_8846#1      ------------------------------------------------------------
                                                                                  

consensus_8846#0      GCTTATCACAGTTGAAAAACCAGGTGAAGTTGTGACAACGCTATCCGCAATAGAAAATTG 510
consensus_8846#1      ------------------------------------------------------------
                                                                                  

consensus_8846#0      CAGTGTAACTGAATTACCTGATACAGAGTCTGGAACTTTGGTATCTAAATATGGACATGT 570
consensus_8846#1      ------------------------------------------------------------
                                                                                  

consensus_8846#0      TGTGAGAGAATAAGATGTAACAATGGTAGAGGTATTATTTGAAGAGAATTCACTTTTGAC 630
consensus_8846#1      ------------------------------------------------------------
                                                                                  

consensus_8846#0      AGTAGAATCTGGAGAAAGACGTTGACCTGAGTTACGATTAGGAGGATTGTAAGCAGAAAC 690
consensus_8846#1      ------------------------------------------------------------
                                                                                  

consensus_8846#0      CGAGGCCACTGTTGCACTAGAATCGGGGTTTTCTGAATCAACAGAAAAAGGAGAACTGGA 750
consensus_8846#1      ------------------------------------------------------------
                                                                                  

consensus_8846#0      CATTAATATATTAGTGGAACTTAGACGTTCATGTGCTCTAATAGTATCTTTCTTAAGATT 810
consensus_8846#1      ------------------------------------------------------------
                                                                                  

consensus_8846#0      ACTATCAGCATATGGGCATCCTGAAATACGCTGATGAGAGAAATAACGAGGTCCTTTGAT 870
consensus_8846#1      ------------------------------------------------------------
                                                                                  

consensus_8846#0      ATGCCCGTAACCTTTGCAACCGGGAGTTGGGCACCCGCCAAATGGGTTGGCAGTCCCACT 930
consensus_8846#1      ------------------------------------------------------------
                                                                                  

consensus_8846#0      ACAGCTGAGAGAACTGGCAGAAGAATTAGAATAAGAATCCATTAGGTTTCCATTTAAATC 990
consensus_8846#1      ------------------------------------------------------------
                                                                                  

consensus_8846#0      CAATTCAGAATCATATCCCGGTGGGACTTG 1020
consensus_8846#1      ------------------------------