cluster # 8849

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Schistosoma mansoni
cluster # 8849 cluster # 8849 Sequences # 7 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8849#0 length = 565 sequences # 3
consensus_8849#1 length = 399 sequences # 2

consensus_8849#2 length = 324 sequences # 1
consensus_8849#3 length = 205 sequences # 1

consensusID : consensus_8849#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 565
fasta sequence

                              [CGGAGAACTAATAGTTGAAATGCAGACTATTGATGGTATCGGTCCAGTTGTTGAACCTATATCTAGTTTGCCATTCTTTCGAGTTAGTACTTCTACTCAACATCAACATCATCGTCAATCTATTGAAAAATTAAAATCTCCCAAATTTCAGTCATGCGTTCCAAATAATTCATTATCGAATACTGTGAATAATTCTAGTCAGAGAGTTAATGATAGTTTACTAGCTAACCAAGAAGGAATAGGACAACCAGATGATGAATTAGTTGCACTTGGTTTAGGTAGTAAACCTTGTTCTAACACAACGGCGCAAGTACGAACGTTACATAGTGCTATCGGAGGAAGTTACGATTATCACAGTATCGATTATAATTTGAGTGTGAAGTCTCCTTC-TCAAANTGT-ACAGTACGTCCAAAATCAGCTACATGTCAACCATCTACTGTCACATATCTACTAATAGACCAGATCAACAAACTACCTTAAATGAAAGTAGAATACAGTTTACGACAATATCATCCACTTCAAAAGATAATAACAACAATCACTGCTCTTTGAATCACCACAATTA]

[+] EMBL CD181635             [CGGAGAACTAATAGTTGAAATGCAGACTATTGATGGTATCGGTCCAGTTGTTGAACCTATATCTAGTTTGCCATTCTTTCGAGTTAGTACTTCTACTCAACATCAACATCATCGTCAATCTATTGAAAAATTAAAATCTCCCAAATTTCAGTCATGCGTTCCAAATAATTCATTATCGAATACTGTGAATAATTCTAGTCAGAGAGTTAATGATAGTTTACTAGCTAACCAAGAAGGAATAGGACAACCAGATGATGAATTAGTTGCACTTGGTTTAGGTAGTAAACCTTGTTCTAACACAACGGCGCAAGTACGAACGTTACATAGTGCTATCGGAGGAAG TACGATTATCACAGTATCGATTATAATTTGAGTGTGAAGTCTCCTTC TCAAANTGT ACAG                                                                                                                                                                  ]
[+] EMBL CD181602             [CGGAGAACTAATAGTTGAAATGCAGACTATTGATGGTATCGGTCTAGTTGTTGAACCTATATCTAGTTTGCCATTCTTTCGAGTTAGTACTTCTACTCAACATCAACATCATCGTCAATCTATTGAAAAATTAAAATCTCCCAAATTTCAGTCATGCGTTCCAAATAATTCATTATCGAATACTGTGAATAATTCTAGTCAGAGAGTTAATGATAGTTCACTAGCTAACCAAGAAGGAATAGGACAACCAGATGGTGAATTAGTTGCACTTGGTTTAGGTAGTAAACCTTGTTCTAACACAACGGCGCAAGTACGAACGTTACATAGTGCTATCGGAGGAAGTTCCGATTATCACAGTATCGATTATAATTTGAGTGTGAAGTCTC                                                                                                                                                                                     ]
[-] EMBL CD166616             [                                                                                                                                                                                      CTGTGAATAATTCTAGTCAGAGAGTTAATGATAGTTTACTAGCTAACCAAGAAGGAATAGGACAACCAGATGATGAATTAGTTGCACTTGGTTTAGGTAGTAAACCTTGTTCTAACACAACGGCGCAAGTACGAACGTTACATAGTGCTATCGGAGGAAGTTACGATTATCACAGTATCGATTATAATTTGAGTGTGAAGTCTCCTTCTTCAAA TGTAACAGTACGTCCAAAATCAGCTACATGTCAACCATCTACTGTCACATATCTACTAATAGACCAGATCAACAAACTACCTTAAATGAAAGTAGAATACAGTTTACGACAATATCATCCACTTCAAAAGATAATAACAACAATCACTGCTCTTTGAATCACCACAATTA]




>consensus_8849#0
CGGAGAACTAATAGTTGAAATGCAGACTATTGATGGTATCGGTCCAGTTGTTGAACCTAT
ATCTAGTTTGCCATTCTTTCGAGTTAGTACTTCTACTCAACATCAACATCATCGTCAATC
TATTGAAAAATTAAAATCTCCCAAATTTCAGTCATGCGTTCCAAATAATTCATTATCGAA
TACTGTGAATAATTCTAGTCAGAGAGTTAATGATAGTTTACTAGCTAACCAAGAAGGAAT
AGGACAACCAGATGATGAATTAGTTGCACTTGGTTTAGGTAGTAAACCTTGTTCTAACAC
AACGGCGCAAGTACGAACGTTACATAGTGCTATCGGAGGAAGTTACGATTATCACAGTAT
CGATTATAATTTGAGTGTGAAGTCTCCTTCTCAAANTGTACAGTACGTCCAAAATCAGCT
ACATGTCAACCATCTACTGTCACATATCTACTAATAGACCAGATCAACAAACTACCTTAA
ATGAAAGTAGAATACAGTTTACGACAATATCATCCACTTCAAAAGATAATAACAACAATC
ACTGCTCTTTGAATCACCACAATTA

consensusID : consensus_8849#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 399
fasta sequence

                              [TCATACCATACCATCATCTGAACAAAGAACTGATGTCTCCCTTGACAGAGGTACGACTAACATATCTTCCACCATTCCTGGCTCGGATCATACTATCAATACTTCTAGAGATTTTGAGACTGATTCCGGCAACTTCGGGAATCACAATTAGAATCGGAATCACTTGATTGGAAGTCTTTCGAGTTGGGTAGTGTTAGTAAATTTGCAATATCTTTAGCGCGCAGAGTAGCATATTTATCATCCAAATTTGATCCACATTTAGTGAAACCTTCAAATGAATCAAGATCAATTTCTGGCTCTCCATCACTTCCTTCAACTAACTGGTAGTTAGATAGAGTTGCTGATGATTCATGGTATTTCTCTAATTGTGGTGATTCAGAAGAGCTGTGATTGTTGTTA]

[+] EMBL CD062594             [TCATACCATACCATCATCTGAACAAAGAACTGATGTCTCCCTTGACAGAGGTACGACTAACATATCTTCCACCATTCCTGGCTCGGATCATACTATCAATACTTCTAGAGATTTTGAGACTGATTCCGGCAACTTCGGGAATCACAATTAGAATCGGAATCACTTGATTGGAAGTCTTTCGAGTTGGGTAGTGTTAGTAAATTTGCAATATCTTTAGCGCGCAGAGTAGCATATTTATCATCCAAATTTGATCCACATTTAGTGAAACCTTCAAATGAATCAAGATCAATTTCTGGCTCTCCATCACTTCCTTCAACTAACTGGTAGTTAGATAGAGTTGCTGATGATTCATGGTATTTCTCTAATTGTGGTGATTCAGAAGAGCTGTGATTGTTGTTA]
[+] EMBL CD062619             [TCATACCATACCATCATCTGAACAAAGAACTGATGTCTCCCTTGACAGAGGTACGACTAACATATCTTCCACCATTCCTGGCTCGGATCATACTATCAATACTTCTAGAGA                                                                                                                                                                                                                                                                                                ]




>consensus_8849#1
TCATACCATACCATCATCTGAACAAAGAACTGATGTCTCCCTTGACAGAGGTACGACTAA
CATATCTTCCACCATTCCTGGCTCGGATCATACTATCAATACTTCTAGAGATTTTGAGAC
TGATTCCGGCAACTTCGGGAATCACAATTAGAATCGGAATCACTTGATTGGAAGTCTTTC
GAGTTGGGTAGTGTTAGTAAATTTGCAATATCTTTAGCGCGCAGAGTAGCATATTTATCA
TCCAAATTTGATCCACATTTAGTGAAACCTTCAAATGAATCAAGATCAATTTCTGGCTCT
CCATCACTTCCTTCAACTAACTGGTAGTTAGATAGAGTTGCTGATGATTCATGGTATTTC
TCTAATTGTGGTGATTCAGAAGAGCTGTGATTGTTGTTA

consensusID : consensus_8849#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence

                              [AGTACATGTTAAACGTCTCCTTACGTATCTGGCTTCTGAACAAGCTGAGCGTGTTATCGGAGAACTAATAGTTGAAATGCAGACTATTGATGGTATCGGTCTAGTTGTTGAACCTATATCTAGTTTGCCATTCTTTCGAGTTAGTACTTCTACTCAACATCAACATCATCGTCAATCTATTGAAAAATTAAAAAAATCTTCCCCAAATATCCAGTTCATGGCGGTTCCCAAATTAATTTCAATTAATCGAATTACTGTGAAATAAATTCCTAAGTCAAGAAGAAGTWATGATAGGTACTAAGCWAAACCAAAGAAAGGAAATAA]

[-] EMBL SM1247315            [AGTACATGTTAAACGTCTCCTTACGTATCTGGCTTCTGAACAAGCTGAGCGTGTTATCGGAGAACTAATAGTTGAAATGCAGACTATTGATGGTATCGGTCTAGTTGTTGAACCTATATCTAGTTTGCCATTCTTTCGAGTTAGTACTTCTACTCAACATCAACATCATCGTCAATCTATTGAAAAATTAAAAAAATCTTCCCCAAATATCCAGTTCATGGCGGTTCCCAAATTAATTTCAATTAATCGAATTACTGTGAAATAAATTCCTAAGTCAAGAAGAAGTWATGATAGGTACTAAGCWAAACCAAAGAAAGGAAATAA]




>consensus_8849#2
AGTACATGTTAAACGTCTCCTTACGTATCTGGCTTCTGAACAAGCTGAGCGTGTTATCGG
AGAACTAATAGTTGAAATGCAGACTATTGATGGTATCGGTCTAGTTGTTGAACCTATATC
TAGTTTGCCATTCTTTCGAGTTAGTACTTCTACTCAACATCAACATCATCGTCAATCTAT
TGAAAAATTAAAAAAATCTTCCCCAAATATCCAGTTCATGGCGGTTCCCAAATTAATTTC
AATTAATCGAATTACTGTGAAATAAATTCCTAAGTCAAGAAGAAGTWATGATAGGTACTA
AGCWAAACCAAAGAAAGGAAATAA

consensusID : consensus_8849#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 205
fasta sequence

                              [ATCGGTAATCTACATTTTGCACAGGGTGTGAAAACTCCTGTTGATCAGACATTGTAACATCATCGTTATTATCATCATCGGAATCAGTCTCAAAATCTCTAGGAGTATTGATAGTATGATCCGAGCCAGGAATGGTGGAAGATATGTTAGTCGTACCTCTGTCAAGGGAGACATCAGTTCTTTGTTCAGATGATGGTATGGTATG]

[+] EMBL CD062723             [ATCGGTAATCTACATTTTGCACAGGGTGTGAAAACTCCTGTTGATCAGACATTGTAACATCATCGTTATTATCATCATCGGAATCAGTCTCAAAATCTCTAGGAGTATTGATAGTATGATCCGAGCCAGGAATGGTGGAAGATATGTTAGTCGTACCTCTGTCAAGGGAGACATCAGTTCTTTGTTCAGATGATGGTATGGTATG]




>consensus_8849#3
ATCGGTAATCTACATTTTGCACAGGGTGTGAAAACTCCTGTTGATCAGACATTGTAACAT
CATCGTTATTATCATCATCGGAATCAGTCTCAAAATCTCTAGGAGTATTGATAGTATGAT
CCGAGCCAGGAATGGTGGAAGATATGTTAGTCGTACCTCTGTCAAGGGAGACATCAGTTC
TTTGTTCAGATGATGGTATGGTATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8849#0      ---------------------------------------------------------CGG 3
consensus_8849#2      AGTACATGTTAAACGTCTCCTTACGTATCTGGCTTCTGAACAAGCTGAGCGTGTTATCGG 60
consensus_8849#1      ------------TCATACCATACCATCATCTGAACAAAGAACTGATGTCTCCCTTGACAG 48
consensus_8849#3      ------------------------------------------------------------
                                                                                  

consensus_8849#0      AGAACTAATAGTTGAAATGCAGACTATTGATGGTATCGGTCCAGTTGTTGA-ACCTATAT 62
consensus_8849#2      AGAACTAATAGTTGAAATGCAGACTATTGATGGTATCGGTCTAGTTGTTGA-ACCTATAT 119
consensus_8849#1      AGGTACGACTAACATATCTTCCACCATTCCTGGCTCGGATCATACTATCAATACTTCTAG 108
consensus_8849#3      -------------------ATCGGTAATCTACATTTTGCACAGGGTGTGAAAACTCCTGT 41
                                               * *         *  *    * *  * **   *  

consensus_8849#0      CTAGTTTGCCATTCTTTCGAGTTAGTACTTCTACTCAACATCAACATCATCGTCAATCTA 122
consensus_8849#2      CTAGTTTGCCATTCTTTCGAGTTAGTACTTCTACTCAACATCAACATCATCGTCAATCTA 179
consensus_8849#1      AGATTTTGAGACTGATTCCGGC-AACTTCGGGAATCACAATTAGAATCGGAATCACTTGA 167
consensus_8849#3      TGA-TCAGACATTGT--------AACATCATCG-TTATTATCATCATCGGAATCAGTC-- 89
                        * *  *  * *          *          * *  ** *  ***    *** *   

consensus_8849#0      TTGAAAAATTAAAATCTCCCAAATTTCAGTCA-TGCGTTCCAAATAATTCATTATCGAAT 181
consensus_8849#2      TTGAAAAATTAAAA------AAATCTTCCCCA-AATATCC-----AGTTCATGGCGG--T 225
consensus_8849#1      TTGGAAGTCTTTCGAGTTGGGTAGTGTTAGTA-AATTTGCAATATCTTTAGCGCGCAGAG 226
consensus_8849#3      -TCAAAATCTCTAG----GAGTATTGATAGTATGATCCGAGCCAGGAATGGTGGAAGATA 144
                       *  **   *            *        *                *           

consensus_8849#0      ACTGTGAATAATTCTAGTCAGA-GAGTTAATGATAGTTTACTAGCTAA-CCAAGAAGGAA 239
consensus_8849#2      TCCCAAATTAATTTCAATTAATCGAATTACTGTGAAATAAATTCCTAAGTCAAGAAGAAG 285
consensus_8849#1      TAGCATATTTATCATCCAAATTTGATCCACATTTAGTGAAACCTTCAAATGAATCAAGAT 286
consensus_8849#3      TGTTAGTCGTACCTCTGTCAAGGGAGACA---TCAGTTCTTTGTTCAGATGATGGTATGG 201
                                *        *   **   *     *           *    *        

consensus_8849#0      TAGGACAACCAGATGATGAATTAGTTGCACTTGGTTTAGGTAGTAAACCTTGTTCTAACA 299
consensus_8849#2      TWAT-------GATAGGTACTAAGCWAAACCAAAGAAAGGAAATAA-------------- 324
consensus_8849#1      CAATTT---CTGGCTCTCCATCACTT--CCTTCAACTAACTGGTAGTTAGATAGAGTTGC 341
consensus_8849#3      TATG-------------------------------------------------------- 205
                                                                                  

consensus_8849#0      CAACGGCGCAAGTACGAACGTTACATAGTGCTATCGGAGGAAGTTACGATTATCACAGTA 359
consensus_8849#2      ------------------------------------------------------------
consensus_8849#1      TGATGATTCATGGTATTTCTCTAATTGTGGTGATTCAGAAGAGCTGTGATTGTTGTTA-- 399
consensus_8849#3      ------------------------------------------------------------
                                                                                  

consensus_8849#0      TCGATTATAATTTGAGTGTGAAGTCTCCTTCTCAAANTGTACAGTACGTCCAAAATCAGC 419
consensus_8849#2      ------------------------------------------------------------
consensus_8849#1      ------------------------------------------------------------
consensus_8849#3      ------------------------------------------------------------
                                                                                  

consensus_8849#0      TACATGTCAACCATCTACTGTCACATATCTACTAATAGACCAGATCAACAAACTACCTTA 479
consensus_8849#2      ------------------------------------------------------------
consensus_8849#1      ------------------------------------------------------------
consensus_8849#3      ------------------------------------------------------------
                                                                                  

consensus_8849#0      AATGAAAGTAGAATACAGTTTACGACAATATCATCCACTTCAAAAGATAATAACAACAAT 539
consensus_8849#2      ------------------------------------------------------------
consensus_8849#1      ------------------------------------------------------------
consensus_8849#3      ------------------------------------------------------------
                                                                                  

consensus_8849#0      CACTGCTCTTTGAATCACCACAATTA 565
consensus_8849#2      --------------------------
consensus_8849#1      --------------------------
consensus_8849#3      --------------------------