cluster # 8850

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Schistosoma mansoni
cluster # 8850 cluster # 8850 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8850#0 length = 757 sequences # 6

consensus_8850#1 length = 438 sequences # 1

consensusID : consensus_8850#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 757
fasta sequence

                              [CCTCGCGGCCAAAAATTCGGCACGAGGGAATATTTAAGGACTTGTCGCGAAGACTTCATTGTTTGAAGTAAATGAATATCAGTTACTGTCAGTATCAAATGTAGGTGGATTATAAGTGCCCACTGAACTTGCCATTCATTTCAAACTTCATATTAAGCTGAATAACTGGTGATATCTTCGTCATTAGCTACATCTTTTTCCGATACCATATGTACACTTATGAATCTGTTATCAATTGAACATTTTTGACACAGGAGTCTTATTTTCTTCGGATTTTTAAGCTCGAGGTGGATGTACTAACTTT-CCGGAATGCCAGATCTCCCCTTTTGTATAAGCCACTGTTCGGGTTGTCTTATATTGACGTGTGATGCTGTTGAATGTTTTGTTACTGACTGTCCAAACGGTTGTGGGATGCGTATGC-ATTCGTGCAAGGTTGATGACCACGTGGGTCAAATATGCCCCAAGACCATAGTTCCATGTATCAACAAAGAACTCGGTTGTCCACACTTAATATGTCGTGAGGACAAATCATTTCATTTGCTCAGTTGTCCTGCTAGTGTTGTTAGCTGTAATGCTCGATGCCCCTTGCTTTTCAGGCAAACAGAGAAAAAGTCTACCTCTCCAGTAACCTGTACTGTAAATCCAATTATTCATTATGCTTCTTGTAATTCATATGTTTACCGACCAATTAATTCACCTCTGTTGGGGGTCGATTTTGATGCCATCAGCGAACTTTTACAAATAGACTGACGGTATA]

[+] EMBL CD080194             [CCTCGCGGCCAAAAATTCGGCACGAGGGAATATTTAAGGACTTGTCGCGAAGACTTCATTGTTTGAAGTAAATGAATATCAGTTACTGTCAGTATCAAATGTAGGTGGATTATAAGTGCCCACTGAACTTGCCATTCATTTCAAACTTCATATTAAGCTGAATAACTGGTGATATCTTCGTCATTAGCTACATCTTTTTCCGATACCATATGTACACTTATGAATCTGTTATCAATTGAACATTTTTGACACAGGAGTCTTATTTTCTTCGGATTTTTAAGCTCGAGGTGGATGTACTAACTTT CCGGAATGCCAGATCTCCCCTTTTGTATAAGCCACTGTTCGGGTTGTCTTATATTGACGTGTGATGCTGTTGAATGTTTTGTTACTGACTGTCCAAACGGTTGTGGGATGCGTATGC ATTCGTGCAAGGTTGATGACCACGTGGGTCAAATATGCCCCAAGACCATAGTTCCATGTATCAACAAAGAACTCGGTTGTCCACACTTAATATGTCGTGAGGACAAATCATTTCATTTGCTCAGTTGTCCTGCTAGTGTTGTTAGCTGTAATGCTCGATGCCCCTTGCTTTTCAGGCAAACAGAGAAAAAGTCTACCTCTCCAGTAACCTGTACTGTAAATCCAATTATTCATTATGCTTCTTGTAATTCATATGTTTACCGACCAATTAATTCACCTCTGTTGGGGGTCGATTTTGATGCCATCAGCGAACTTTTACAAATAGACTGACGGTATA]
[+] EMBL CD127513             [                                                                                                                   GTGCCCACTGAACTTGCCATTCATTACAAACTTCATATTAAGCTGAATAACTGGTGATATCTACGACATTATCTACATCTTTGTCCGATACCATATGTACACTTATGAATCTGGTATCAATTGAACATTGATGACACAGGAGTCTTATATTCTTCGGATTTTTAAGCTCGAGGTGGATGTACTAACTTTACCGGAATGCCAAATATGCCCTTTTGTATAAGCCACTGTTCTGGTAGTCTTATATAGACGTGTGATGCTGGTGAATGTTATGTTACTGACTGTCCAAACGGCTGAGGGATGCGTATGCGATACGTGCAAGGTTGATGACCACGTGGGTCAAATATGCCCCAAGACCATAGTTCCATGTATCAACAAAGAACTCGGTTGTCCACACTTAATATGTCGTGAGGACAAATCATTTCATTTGCTCAGTTGTCCTGCTAGTGTTGTTAGCTGTAATGCTCGATGCCCCTTGCTTTTCAGGCAAACAGAGAAAAAGTCTAC                                                                                                                                            ]
[+] EMBL CD127831             [                                                                                                                   GTGCCCACTGAACTTGCCATTCATTTCAAACTTCATATTAAGCTGAATAACTGGTGATATCTTCGTCATTAGCTACATCTTTTTCCGATACCATATGTACACTTATGAATCTGTTATCAATTGAACATTTTTGACACAGGAGTCTTATTTTCTTCGGATTTTTAAGCTCGAGGTGGATGTACTAACTTT CCGGAATGCCAGATCTCCCCTTTTGTATAAGCCACTGTTCGGGTTGTCTTATATTGACGTGTGATGCTGTTGAATGTTTTGTTACTGACTGTCCAAACGGTTGTGGGATGCGTATGC ATTCGTGCAAGGTTGATGACCACGTGGGTCAAATATGCCCCAAGACCATAGTTCCATGTATCAACAAAGAACTCGGTTGTCCACACTTAATATGTCGTGAGGACAAATCATTTCATTTGCTCAGTTGTCCTGCTAGTGTTGTTAGCTGTAATGCTCGATGCCCCTTGCTTTTCAGGCAAACAGAGAAAAAGTCTAC                                                                                                                                            ]
[-] EMBL CD127880             [                                                                                                                    TGCCCACTGAACTTGCCATTCATTTCAAACTTCATATTAAGCTGAATAACTGGTGATATCTTCGTCATTAGCTACATCTTTTTCCGATACCATATGTACACTTATGAATCTGTTATCAATTGAACATTTTTGACACAGGAGTCTTATTTTCTTCGGATTTTTAAGCTCGAGGTGGATGTACTAACTTT CCGGAATGCCAGATCTCCCCTTTTGTATAAGCCACTGTTCGGGTTGTCTTATATTGACGTGTGATGCTGTTGAATGTTTTGTTAGTGACTGTCCAAACGGTTGTGGTATGCGTATGC ATTCGTGCAAGGTTGATGACCACGTGGGTCAAATATGCCCCAAGACCATAGTTCCATGTATCAACAAAGAACTCGGTTGTCCACACTTAATATGTAGTGAGGACAAATCATTTCATTTGCTCAGTTGTCCTGATAGTGTTGTTAGCTGTAATGCTAGATGCCCCTTGCTGTTCAGGCTCACAGAGAAAGAGTAAACC                                                                                                                                           ]
[+] EMBL CD127699             [                                                                                                                  gcctCCCACTGAACTTGCCATTCATTTCACACTTCATATTAAGCTGAATAACTGGTGATATCTTCGTCATTAGCTACATCTTTTTCCGATACCATATGTACACTTATGAATCTGTTATCAATTGAACATTTTTGACACAGGAGTCTTATTTTCTTCGGATTTTTAAGCTCGAGGTGGATGTACTAACTTT CCGGAATGCCAGATCTCCCCTTTTGTATAAGCCACTGTTCGGGTTGTCTTATATTGACGTGTGATGCTGTTGAATGTTTTGTTACTGACTGTCCAAACGGTTGTGGGATGCGTATGC ATTCGTGCAAGGTTGATGACCACGTGGGTCAAATATGCCCCAAGACCATAGTTTCATGTATCAACAAAGAACTCGGTTGTCCACACTTAATATGTCGGGAGGACAAATCATTTCATTTGCTCAATTGAGCTGCTAGTGTTGTTAGCTGTAATGCTCGATGCCCCTTGCTTTTTAGGCGAACAGAGAAAAAGTCTAC                                                                                                                                            ]
[-] EMBL CD127964             [                                                                                                                                                                                                                                                                                                           ACTTT CCGGAATGCCAGATCTCCCCTTTTGTATAAGCCACTGTTCGGGTTGTCTTATATTGACGTGTGATGCTGTTGAATGTTTTGTTACTGACTGTCCAAACGGTTGTGGGATGCGTATGC ATTCGTGCAAGGTTGATGACCACGTGGGTCAAATATGCCCCAAGGCCATAGTTCCATGTATCAACAAAGAACTCGGTTGTCCACACTTAATATGTCGTGAGGACAAATCATTTCATTTGCTCAGTTGTCCTGCTAGTGTTGTTAGCTGTAATGCTCGATGCCCC TGCTTTTCAGGCAAACAGAGAAAAAGAATACCTCTCCAGTAACCTaccta                                                                                                                         ]




>consensus_8850#0
CCTCGCGGCCAAAAATTCGGCACGAGGGAATATTTAAGGACTTGTCGCGAAGACTTCATT
GTTTGAAGTAAATGAATATCAGTTACTGTCAGTATCAAATGTAGGTGGATTATAAGTGCC
CACTGAACTTGCCATTCATTTCAAACTTCATATTAAGCTGAATAACTGGTGATATCTTCG
TCATTAGCTACATCTTTTTCCGATACCATATGTACACTTATGAATCTGTTATCAATTGAA
CATTTTTGACACAGGAGTCTTATTTTCTTCGGATTTTTAAGCTCGAGGTGGATGTACTAA
CTTTCCGGAATGCCAGATCTCCCCTTTTGTATAAGCCACTGTTCGGGTTGTCTTATATTG
ACGTGTGATGCTGTTGAATGTTTTGTTACTGACTGTCCAAACGGTTGTGGGATGCGTATG
CATTCGTGCAAGGTTGATGACCACGTGGGTCAAATATGCCCCAAGACCATAGTTCCATGT
ATCAACAAAGAACTCGGTTGTCCACACTTAATATGTCGTGAGGACAAATCATTTCATTTG
CTCAGTTGTCCTGCTAGTGTTGTTAGCTGTAATGCTCGATGCCCCTTGCTTTTCAGGCAA
ACAGAGAAAAAGTCTACCTCTCCAGTAACCTGTACTGTAAATCCAATTATTCATTATGCT
TCTTGTAATTCATATGTTTACCGACCAATTAATTCACCTCTGTTGGGGGTCGATTTTGAT
GCCATCAGCGAACTTTTACAAATAGACTGACGGTATA

consensusID : consensus_8850#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence

                              [ATGCTGTTGAATGTTTTGTTACTGACGGTCCAAACGGTTGTGGGATGCGTATGCATTCGTGCAAGGTTGATGACCACGTGGGTCAAATATGCCCCAAGACCATAGTTCCATGTATCAACGAAAGAACTCGGTTGTCCACACTTAATATGTCGTGAGGACAAATCATTTCATTTGCTCAGTTGTCCTGCTAGTGTTGTTAGCTGTAATGCTCGAGGCCCCTTGCTTTTCAGGCAAACAGAGATTAAGTCTACCTCTCCAGTAACCTGTACTGTAAATCCGAGAGTTATTCATTATGCATTCTTGTAATTCATATGTTTACCGACCAATTAATTCACCTCTGTTGGGGGTCGATTATGGCAAGTCATTTAGATTACATTGTTCTACTCATAATTTCTTTATTGATTTTACACTACTGTTTATCAGCTAGTGAACTAACAC]

[-] EMBL CD196620             [ATGCTGTTGAATGTTTTGTTACTGACGGTCCAAACGGTTGTGGGATGCGTATGCATTCGTGCAAGGTTGATGACCACGTGGGTCAAATATGCCCCAAGACCATAGTTCCATGTATCAACGAAAGAACTCGGTTGTCCACACTTAATATGTCGTGAGGACAAATCATTTCATTTGCTCAGTTGTCCTGCTAGTGTTGTTAGCTGTAATGCTCGAGGCCCCTTGCTTTTCAGGCAAACAGAGATTAAGTCTACCTCTCCAGTAACCTGTACTGTAAATCCGAGAGTTATTCATTATGCATTCTTGTAATTCATATGTTTACCGACCAATTAATTCACCTCTGTTGGGGGTCGATTATGGCAAGTCATTTAGATTACATTGTTCTACTCATAATTTCTTTATTGATTTTACACTACTGTTTATCAGCTAGTGAACTAACAC]




>consensus_8850#1
ATGCTGTTGAATGTTTTGTTACTGACGGTCCAAACGGTTGTGGGATGCGTATGCATTCGT
GCAAGGTTGATGACCACGTGGGTCAAATATGCCCCAAGACCATAGTTCCATGTATCAACG
AAAGAACTCGGTTGTCCACACTTAATATGTCGTGAGGACAAATCATTTCATTTGCTCAGT
TGTCCTGCTAGTGTTGTTAGCTGTAATGCTCGAGGCCCCTTGCTTTTCAGGCAAACAGAG
ATTAAGTCTACCTCTCCAGTAACCTGTACTGTAAATCCGAGAGTTATTCATTATGCATTC
TTGTAATTCATATGTTTACCGACCAATTAATTCACCTCTGTTGGGGGTCGATTATGGCAA
GTCATTTAGATTACATTGTTCTACTCATAATTTCTTTATTGATTTTACACTACTGTTTAT
CAGCTAGTGAACTAACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8850#0      CCTCGCGGCCAAAAATTCGGCACGAGGGAATATTTAAGGACTTGTCGCGAAGACTTCATT 60
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      GTTTGAAGTAAATGAATATCAGTTACTGTCAGTATCAAATGTAGGTGGATTATAAGTGCC 120
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      CACTGAACTTGCCATTCATTTCAAACTTCATATTAAGCTGAATAACTGGTGATATCTTCG 180
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      TCATTAGCTACATCTTTTTCCGATACCATATGTACACTTATGAATCTGTTATCAATTGAA 240
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      CATTTTTGACACAGGAGTCTTATTTTCTTCGGATTTTTAAGCTCGAGGTGGATGTACTAA 300
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      CTTTCCGGAATGCCAGATCTCCCCTTTTGTATAAGCCACTGTTCGGGTTGTCTTATATTG 360
consensus_8850#1      ------------------------------------------------------------
                                                                                  

consensus_8850#0      ACGTGTGATGCTGTTGAATGTTTTGTTACTGACTGTCCAAACGGTTGTGGGATGCGTATG 420
consensus_8850#1      -------ATGCTGTTGAATGTTTTGTTACTGACGGTCCAAACGGTTGTGGGATGCGTATG 53
                             ************************** **************************

consensus_8850#0      CATTCGTGCAAGGTTGATGACCACGTGGGTCAAATATGCCCCAAGACCATAGTTCCATGT 480
consensus_8850#1      CATTCGTGCAAGGTTGATGACCACGTGGGTCAAATATGCCCCAAGACCATAGTTCCATGT 113
                      ************************************************************

consensus_8850#0      ATCAAC-AAAGAACTCGGTTGTCCACACTTAATATGTCGTGAGGACAAATCATTTCATTT 539
consensus_8850#1      ATCAACGAAAGAACTCGGTTGTCCACACTTAATATGTCGTGAGGACAAATCATTTCATTT 173
                      ****** *****************************************************

consensus_8850#0      GCTCAGTTGTCCTGCTAGTGTTGTTAGCTGTAATGCTCGATGCCCCTTGCTTTTCAGGCA 599
consensus_8850#1      GCTCAGTTGTCCTGCTAGTGTTGTTAGCTGTAATGCTCGAGGCCCCTTGCTTTTCAGGCA 233
                      **************************************** *******************

consensus_8850#0      AACAGAGAAAAAGTCTACCTCTCCAGTAACCTGTACTGTAAATCCAA---TTATTCATTA 656
consensus_8850#1      AACAGAGATTAAGTCTACCTCTCCAGTAACCTGTACTGTAAATCCGAGAGTTATTCATTA 293
                      ********  *********************************** *   **********

consensus_8850#0      TGC-TTCTTGTAATTCATATGTTTACCGACCAATTAATTCACCTCTGTTGGGGGTCGATT 715
consensus_8850#1      TGCATTCTTGTAATTCATATGTTTACCGACCAATTAATTCACCTCTGTTGGGGGTCGATT 353
                      *** ********************************************************

consensus_8850#0      TTGATGCCATCAGCGAACTTTTACAAATAGACTGACGGTATA------------------ 757
consensus_8850#1      ATGGCAA-GTCATTTAGATTACATTGTTCTACTCATAATTTCTTTATTGATTTTACACTA 412
                       **      ***   *  **  *    *  *** *   * *                   

consensus_8850#0      --------------------------
consensus_8850#1      CTGTTTATCAGCTAGTGAACTAACAC 438