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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8851#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 763 fasta sequence
[CTGAAGAATGGTTAAAGAAAAAGATGATCCAATTTTGAATGAGTTTAGTTTACGTAAAGCTAATGATATGAAGACCACTGACTTTCCGGAATGTAAAATAGGCGGTTGGAATGAGGGTAAAATTTCGCACAGCGTGTCGTTTGGAAGGAGAGCTGAAGAAGATTCACTGGATGTTTGCAAAGCATTACGGAAGGAAGAAATATCTTTTAGAATCTGACGAAGAACTCGAGATCCCTATTGTTCCTGATCTAAGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATAAACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCGTTGTTGGACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGTTCTCTGAATCCGAATTGCAAGAAATTGGATCGATTTCAATGTGTTTATTGATGGCTGATTAACATGAGTGCCAAGCTTTTANTAATTCTCTGGTGTTTTTAGAAATCCCTCTATCCAAGATGTCAACATTTTTCTACTCGACACACTTTTGGACACTTCATTTCTACCCTTAGTTGTTGGTCAGAAGAACCACTG-AAGCCCTACGATCAACCCGTCCAGTTCGGAAGACAAAACCCAACCAAATTGTTTCGAATTAATACTGTA-TATGGAAAATTTACTTATAATAATTAAAGCTTAGATTTCAATTTCTTTTTTTTTCCTGAAATTATTTTTTATTAAACCCTTG]
[+] EMBL CD083084 [CTGAAGAATGGTTAAAGAAAAAGATGATCCAATTTTGAATGAGTTTAGTTTACGTAAAGCTAATGATATGAAGACCACTGACTTTCCGGAATGTAAAATAGGCGGTTGGAATGAGGGTAAAATTTCGCACAGCGTGTCGTTTGGAAGGAGAGCTGAAGAAGATTCACTGGATGTTTGCAAAGCATTACGGAAGGAAGAAATATCTTTTAGAATCTGACGAAGAACTCGAGATCCCTATTGTTCCTGATCTAAGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATAAACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCGTTGTTGGACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGTTCTCTGAATCCGAATTGCAAGAAATTGGATCGATTTCAATGTGTTTATTGATGGCTGATTAACATGAGTGCCAAGCTTTTANTAATTCTCTGGTGTTTTTAGAAATCCCTCTATCCAAGATGTCAACATTTTTCTACTCGACACACTTTTGGACACTTCATTTCTACCCTTAGTTGTTGGTCAGAAGAACCACTG AAGCCCTACGATCAACCCGTCCAGTTCGGAAGACAAAACCCAACCAAATTGTTTCGAATTAATACTGTA TATGGAAAATTTACTTATAATAATTAAAGCTTAGATTTCAATTTCTTTTTTTTTCCTGAAATTATTTTTTATTAAACCCT ]
[-] EMBL CD076658 [ AGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATAAACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCGTTGTTGGACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGTTCTTTGAATCCGAATTGCAAGAAATTGGATCGATTTCAATGTGTTTATTGATGGCTGATTAACATGAGTGCCAAGCTTTTATAAATTCTCTGGTGTTTTTAGAAATCCCTCTATCCAAGATGTCAACATTTTTTTACTCGACACACTTTTGAACACTTCATTTCTACCTTTAGTTGTTGTTCAGAAGAACCA TGAAAGCCCTACGATCAAACCGTCCAGTTCGGAGAACAAAACCCCACCAAAATGGTTCGAATTAATACTGTATTAT GAAAATTTACTTATAATAATTAAAGCTAAGAATTCAATTTCTATATTTATACTGAAATTATATTATAATAAAtcactg]
consensusID : consensus_8851#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence
[ACCACTGACTTTCCGGAATGTAAAATAGGCGGTTGGAATGAGGGTAAAATTTCGCACAGCGTGTCGTTTGGAAGGAGGTATGTACTCTATTTATATTTCAACAAACATTTTCACAGAGCTGAAGAAGATTCACTGGATGTTTGCAAAGCATTACGGAAGGAAGGTAAAATCATTCTTTGACTTTATGATGAGCGTAATCCGGAAATATCTTTTAGAATCTGACGAAGAACTCGGTAATATTCTATTTCTGTGTTTAGAAGTTAACAGAGATCCCTATTGTTCCTGATCTAAGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATAAACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCGTTGTTGGTAAGATAACATTTTTAGAGAGAAGATGGTGAACTTGTTTAAATAATTTTTATCATAATCCATCTTTCTTTTAGGACGGTGACATTAACTTAAGGGTTTTGACGAANAATTTGTTCTCTGAATCCGAATTGCAAGAAGTAAGAGTATATTTATTTAAACGATNTAAAAATCCATTTAATTG]
[+] EMBL CD137820 [ACCACTGACTTTCCGGAATGTAAAATAGGCGGTTGGAATGAGGGTAAAATTTCGCACAGCGTGTCGTTTGGAAGGAGGTATGTACTCTATTTATATTTCAACAAACATTTTCACAGAGCTGAAGAAGATTCACTGGATGTTTGCAAAGCATTACGGAAGGAAGGTAAAATCATTCTTTGACTTTATGATGAGCGTAATCCGGAAATATCTTTTAGAATCTGACGAAGAACTCGGTAATATTCTATTTCTGTGTTTAGAAGTTAACAGAGATCCCTATTGTTCCTGATCTAAGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATAAACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCGTTGTTGGTAAGATAACATTTTTAGAGAGAAGATGGTGAACTTGTTTAAATAATTTTTATCATAATCCATCTTTCTTTTAGGACGGTGACATTAACTTAAGGGTTTTGACGAANAATTTGTTCTCTGAATCCGAATTGCAAGAAGTAAGAGTATATTTATTTAAACGATNTAAAAATCCATTTAATTG]
consensusID : consensus_8851#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 563 fasta sequence
[CCTCGAGGCCAAAAATTTGGCACGAGGTGGATGTTTGCAAAGCATTACGGAAGGAAGAATCTGACGAAGAACTCGAGATCCCTATTGTTCCTGATCTAAGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATAAACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCGTTGTTGGTAAGATAACATTTTTAGAGAGAAGATGGTGAACTTGTTTAAATAATTTTTATCATAATCCATCTTTCTTTTAGGACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGTTCTCTGAATCCGAATTGCAAGAAGTAAGAGTATATTTATTTAAACGATTTAAAAAATCCATTTAATTGTCGTAGATTGATGAAACATGGAGTTGGGACTTTTTGTTCTCTGAATTAAAGACATTGAAATAAGACACTGATCTGATCAACATTTTAAACTTATCTACATATTTCGTTTTAATAAATCTAATTGTTTTGTATCAGAGAAACAAGATATAGAAATAAT]
[+] EMBL CD079504 [CCTCGAGGCCAAAAATTTGGCACGAGGTGGATGTTTGCAAAGCATTACGGAAGGAAGAATCTGACGAAGAACTCGAGATCCCTATTGTTCCTGATCTAAGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATAAACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCGTTGTTGGTAAGATAACATTTTTAGAGAGAAGATGGTGAACTTGTTTAAATAATTTTTATCATAATCCATCTTTCTTTTAGGACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGTTCTCTGAATCCGAATTGCAAGAAGTAAGAGTATATTTATTTAAACGATTTAAAAAATCCATTTAATTGTCGTAGATTGATGAAACATGGAGTTGGGACTTTTTGTTCTCTGAATTAAAGACATTGAAATAAGACACTGATCTGATCAACATTTTAAACTTATCTACATATTTCGTTTTAATAAATCTAATTGTTTTGTATCAGAGAAACAAGATATAGAAATAA ]
[-] EMBL CD073773 [ GGATGTTTGCAAAGCATTACGGAAGGAAGAATCTGACGAAGAACTCGAGATCCCTATTGTTCCTGATCTAAGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATAAACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCGTTGTTGGTAAGATAACATTTTTAGAGAGAAGATGGTGAACTTGTTTAAATAATTTTTATCATAATCCATCTTTCTTTTAGGACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGTTCTCTGAATCCGAATTGCAAGAAGTAAGAGTATATTTATTTAAACGATTTAAAAAATCCATTTAATTGTCGTAGATTGATGAAACATGGAGTTGGGACTTTTTGTTCTCTGAATTAAAGACATTGAAATAAGACACTGATCTGATCAACATTTTAAACTTATCTACATATTTCGTTTTAATAAATCTAATTGTTTTGGATCAGAGAAACAAGA AAAGAAATAAT]
consensusID : consensus_8851#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 498 fasta sequence
[GGTATTATTTCGCACAGCGTGTCGTTTGGAAGGAGAGCTGAAGAAGATTCACTGGATGTTTGCAAAGCATTACGGAAGGAGGAATCTGACGAAGAACTCGAGATCCCTATTGTTCCTGATCTAAGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATAAA-CAAGATTCCAGCGTACAGTGAACTTAGT-CAAGATCTACCCAATCATGGCA-CGCTTCCGTTGTTGGACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGTTCTCTGAATCCGAATTGCAAGAAATTGATGAAACATGGAGTTGGGACTTTTTGTTCTCTGAATTAAAGACATTGAAATAAGACACTGATCTGATCAACATTTTAAACTTATCTACATATTTCGTTTTAATAAATCTAATTGTTTTGTATCAGAGAAACAAGATATAGAAATAATATTCTCTTTACAGTGTTAAAAAAAAAAAAAAAAAA]
[+] EMBL CD127750 [GGTATTATTTCGCACAGCGTGTCGTTTGGAAGGAGAGCTGAAGAAGATTCACTGGATGTTTGCAAAGCATTACGGAAGGAGGAATCTGACGAAGAACTCGAGATCCCTATTGTTCCTGATCTAAGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATAAA CAAGATTCCAGCGTACAGTGAACTTAGT CAAGATCTACCCAATCATGGCA CGCTTCCGTTGTTGGACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGTTCTCTGAATCCGAATTGCAAGAAATTGATGAAACATGGAGTTGGGACTTTTTGTTCTCTGAATTAAAGACATTGAAATAAGACACTGATCTGATCAACA ]
[-] EMBL AI395221 [ CATAAACCAAG TTCCAGCGTACAGTGAACTT GTCCAAGATCTACCCAATCATGGCACCGC TCCGTTGTTGGACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGTTCTCTGAATCCGAATTGCAAGAAATTGATGAAACATGGAGTTGGGACTTTTTGTTCTCTGAATTAAAGACATTGAAATAAGACACTGATCTGATCAACATTTTAAACTTATCTACATATTTCGTTTTAATAAATCTAATTGTTTTGTATCAGAGAAACAAGATATAGAAATAATATTCTCTTTACAGTGTTAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8851#2 ------------------------------------------------------------
consensus_8851#3 ------------------------------------------------------------
consensus_8851#1 ACCACTGACTTTCCGGAATGTAAAATAGGCGGTTGGAATGAGGGTAAAATTTCGCACAGC 60
consensus_8851#0 ---------------------------------------------CTGAAGAATGGTTAA 15
consensus_8851#2 ------------------------------------------------------------
consensus_8851#3 ------------------------------------------------------------
consensus_8851#1 GTGTCGTTTGGAAGGAGGTATGTACTCTATTTATATTTCAACAAACATTTTCACAGAGCT 120
consensus_8851#0 AGAAAAAGATGATCCAATTTTGAATGAGTTTAGTTTACGTAAAGCTAATGATATGAAGAC 75
consensus_8851#2 ------------------------------------------------------------
consensus_8851#3 ----------------------------------------GGTATTATTTCGCACAGCGT 20
consensus_8851#1 GAAGAAGATTCACTGGATGTTTGCAAAGCATTACGGAAGGAAGGTAAAATCATTCTTTGA 180
consensus_8851#0 CACTGACTTTCCGGAATGTAAAATAGGCGGTTGGAATGAGGGTAAAATTTCGCACAGCGT 135
consensus_8851#2 --CCTCGAGGCCAAAAATTTGGCACGA---GGTGGATGTTTGCAAAGCATTACGGAAGGA 55
consensus_8851#3 GTCGTTTGGAAGGAGAGCTGAAGAAGATTCACTGGATGTTTGCAAAGCATTACGGAAGGA 80
consensus_8851#1 CTTTATGATGAGCGTAATCCGGAAATATCTTTTAGAATCTGACGAAGAACTCGGTAATAT 240
consensus_8851#0 GTCGTTTGGAAGGAGAGCTGAAGAAGATTCACTGGATGTTTGCAAAGCATTACGGAAGGA 195
* * * * ** * * *** * * * **
consensus_8851#2 AGAA---TCTG----------ACGAAGAACTC----GAGATCCCTATTGTTCCTGATCTA 98
consensus_8851#3 GGAA---TCTG----------ACGAAGAACTC----GAGATCCCTATTGTTCCTGATCTA 123
consensus_8851#1 TCTA---TTTCTGT-------GTTTAGAAGTTAACAGAGATCCCTATTGTTCCTGATCTA 290
consensus_8851#0 AGAAATATCTTTTAGAATCTGACGAAGAACTC----GAGATCCCTATTGTTCCTGATCTA 251
* * * **** * ************************
consensus_8851#2 AGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATA 158
consensus_8851#3 AGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATA 183
consensus_8851#1 AGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATA 350
consensus_8851#0 AGTAGTGTTGAAGAACAGTCTGTCGCATTTCAGGGTGCGGTCGCACCGAGTGTGGTCATA 311
************************************************************
consensus_8851#2 AACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCG 218
consensus_8851#3 AACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCG 243
consensus_8851#1 AACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCG 410
consensus_8851#0 AACAAGATTCCAGCGTACAGTGAACTTAGTCAAGATCTACCCAATCATGGCACGCTTCCG 371
************************************************************
consensus_8851#2 TTGTTGGTAAGATAACATTTTTAGAGAGAAGATGGTGAACTTGTTTAAATAATTTTTATC 278
consensus_8851#3 TTGTTGG----------------------------------------------------- 250
consensus_8851#1 TTGTTGGTAAGATAACATTTTTAGAGAGAAGATGGTGAACTTGTTTAAATAATTTTTATC 470
consensus_8851#0 TTGTTGG----------------------------------------------------- 378
*******
consensus_8851#2 ATAATCCATCTTTCTTTTAGGACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGT 338
consensus_8851#3 ---------------------ACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGT 289
consensus_8851#1 ATAATCCATCTTTCTTTTAGGACGGTGACATTAACTTAAGGGTTTTGACGAANAATTTGT 530
consensus_8851#0 ---------------------ACGGTGACATTAACTTAAGGGTTTTGACGAAAAATTTGT 417
******************************* *******
consensus_8851#2 TCTCTGAATCCGAATTGCAAGAAGTAAGAGTATATTTATTTAAACGATTTAAAA--AATC 396
consensus_8851#3 TCTCTGAATCCGAATTGCAAGAA------------------------------------- 312
consensus_8851#1 TCTCTGAATCCGAATTGCAAGAAGTAAGAGTATATTTATTTAAACGAT------------ 578
consensus_8851#0 TCTCTGAATCCGAATTGCAAGAAATTGGATCGATTTCAATGTGTTTATTGATGGCTGATT 477
***********************
consensus_8851#2 CATTTAATTGTCGTAGATTGATGAAACATGGAGT----TGGGACTTTTTGTTCTCTGAAT 452
consensus_8851#3 ----------------ATTGATGAAACATGGAGT----TGGGACTTTTTGTTCTCTGAAT 352
consensus_8851#1 -----------------NTAAAAATCCATTTAAT----TG-------------------- 597
consensus_8851#0 AACATGAGTGCCAAGCTTTTANTAATTCTCTGGTGTTTTTAGAAATCCCTCTATCCAAGA 537
* * * * * *
consensus_8851#2 TAAAGACATTGAAATAAGACACTGATCTGATCAACATTTTAAACTTATCTACATATTTCG 512
consensus_8851#3 TAAAGACATTGAAATAAGACACTGATCTGATCAACATTTTAAACTTATCTACATATTTCG 412
consensus_8851#1 ------------------------------------------------------------
consensus_8851#0 TGTCAACATTTTTCTACTCGACACA-CTTTTGGACACTTCATTTCTACCCTTAGTTGTTG 596
consensus_8851#2 TTTTAATAAATC--TAATTGTTTTGTATCAGAGAAACAAGATATAGAAATAAT------- 563
consensus_8851#3 TTTTAATAAATC--TAATTGTTTTGTATCAGAGAAACAAGATATAGAAATAATATTCTCT 470
consensus_8851#1 ------------------------------------------------------------
consensus_8851#0 GTCAGAAGAACCACTGAAGCCCTACGATCAACCCGTCCAGTTCGGAAGACAAAACCCAAC 656
consensus_8851#2 ------------------------------------------------------------
consensus_8851#3 TTACAGTGTTAAAAAAAAAAAAAAAAAA-------------------------------- 498
consensus_8851#1 ------------------------------------------------------------
consensus_8851#0 CAAATTGTTTCGAATTAATACTGTATATGGAAAATTTACTTATAATAATTAAAGCTTAGA 716
consensus_8851#2 -----------------------------------------------
consensus_8851#3 -----------------------------------------------
consensus_8851#1 -----------------------------------------------
consensus_8851#0 TTTCAATTTCTTTTTTTTTCCTGAAATTATTTTTTATTAAACCCTTG 763
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||