cluster # 8854

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Schistosoma mansoni
cluster # 8854 cluster # 8854 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8854#0 length = 480 sequences # 6

consensus_8854#1 length = 160 sequences # 1

consensusID : consensus_8854#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 480
fasta sequence

                              [GGATTATTTGCCTAACCCTGGAGAAGTAATATATTATGCTTTGAATGAAAGTTCTGGTGAAACTAGAAAGGTACCACTAAAACCTGAACGAACCAGTGATAATCCATTCCTGGGACTGGCTTTCAAACTGGAAGCTAGTAAATTTGGTCAGTTAACTTATATGCGTATCTACCAAGGTTGTTTACGTCGTGGTGATTCAGTGAGAAATTCTCGTACAGGTCGTCGTATTCGTGTATCTCGACTTGGTCGATTAAATGTTACAGAATTAGAAGATTTGGAAGCTGTATATGCAGGAGATATTGCTGCATTTTTTGGTGTTGATTGTGCATCTGGTGATACAATGGTTGATGTAAATATGAAAGAACCATTAGCTATGGAATCAATGTTCATCCCAGAACCAGTTGTATCAATGTCAATTAAA-CCGACAAATAGATCAACTGTTGAATTATTTAGTACAGGTTTATCACGATTTACACGTGA]

[+] EMBL CD112290             [GGATTATTTGCCTAACCCTGGAGAAGTAATATATTATGCTTTGAATGAAAGTTCTGGTGAGACTAGAAAGGTACCACTAAAACCTGAACGAACCAGTGATAATCCAATCCTGGGACTGGCTTTCAAACTGGAAGCTAGTAAATTTGGTCAGTTAACTTATATGCGTATCTACCAAGGTTGTTTACGTCGTGGTGATTCAGTGAGAAGTTCTCGTACAGGTCGTCGTATTCGTGTATCTCGACTTGGTCGATTAAATGTTACAGAATTAGAAGATTTGGAAGCTGTATATGCAGGAGATATTGCTGCATTTTTTGGTGTTGATTGTGCATCTGGTGATACAATGGTTGATGTAAATATGAAAGAACCATTAGCTATGGAATCAATGTTCATCCCAGAACCAGTTGTATCAATGTCAATTAAA CCGACAAATAGATCAACTGTTGAATTATTTAGTACAGGTTTATCACGATTT        ]
[+] EMBL CD112316             [          CCTAACCCTGGAGAAGTAATATATTATGCTTTGAATGAAAGTTCTGGTGAAACTAGAAAGGTACCACTAAAACCTGAACGAACCAGTGATAATCCATTCCTGGGACTGGCTTTCAAACTGGAAGCTAGTAAATTTGGTCAGTTAACTTATATGCGTATCTACCAAGGTTGTTTACGTCGTGGTGATCCAGTGAGAAATTCTCGTACAGGTCGTCGTATTCGTGTATCTCGACTTGGTCGATTAAATGTTACAGAATTAGAAGATTTGGAAGCCGTATATGCAGGAGATATTGCTGCATTTTTTGGTGTTGATTGTGCATCTGGTGATACAATGGTTGATGTAAATATGAAAGAACCATTAGCTATGGAATCAATGTTCATCCCAGAACCAGTTGTATCAATGTCAATTAAA CCGACAAATAGATCAACTGTTGAATTATTTAGTACAGGTTTATCACGATTTACACGTGA]
[+] EMBL CD112355             [          CCTAACCCTGGAGAAGTAATATATTATGCTTTGAATGAAAGTTCTGGTGAAACTAGAAAGGTACCACTAAAACCTGAACGAACCAGTGATAATCCATTCCTGGGACTGGCTTTCAAACTGGAAGCTAGTAAATTTGGTCAGTTAACTTATATGCGTATCTACCAAGGTTGTTTACGTCGTGGTGATTCAGTGAGAAATTCTCGTACAGGTCGTCGTATTCGTGTATCTCGACTTGGTCGATTAAATGTTACAGAATTAGAAGATTTGGAAGCTGTTTATGCAGGAGATATTGCTGCATTTTTTGGTGTTGATTGTGCATCTGGTGATACAATGGTTGATGTAAATATGAAAGAACCATTAGCTATGGAATCAATGTTCATCCCAGAACCAGTTGTATCCATGTCAATTAAACCCGAC AATAGAT                                              ]
[+] EMBL CD112197             [          CCTAACCCTGGAGAAGTAATATATTATGCTTTGAATGAAAGTTCTGGTGAAACTAGAAAGGTACCACCAAAACCTGAACGAACCAGTGATAATCCATTCCTGGGACTGGCTTTCAAACTGGAAGCTAGTAAATTTGGTCAGTTAACTTGTATGCGTATCTACCAAGGTTGTTTACGTCGTGGTGATTCAGTGAGAAATTCTCGTACAGGTCGTCGTATTCGTGTATCTCGACTTGGTCGATTAAATGTTACAGAATTAGAAGATCTGGAAGCTGTATATGCAGGAGATATTGCTGCATTTTTTGAGGTTGATTGTGCATCTGGTGATACAATGGTTGATGTAAATATGAAAGAACCATTAGCTATGGAATCAATGTTCA                                                                                            ]
[+] EMBL CD112601             [          CCTAACCCTGGAGAAGTAATATATTATGCTTTGAATGAAAGTTCTGGTGAAACTAGAAAGGTACCACTAAAACCTGAACGAACCAGTGATAATCCAATCCTGGGACTGGCTTTCAAACTGGAAGCTAGTAAATTTGGTCAGTTAACTTATATGCGTATCTACCAAGGTTGTTTACGTCGTGGTGATTCAGTGACAAATTCTCGTACAGGTCGTCGTATTCGTGTATCTCGACTTGGTCGATTAAATGTTACAGAATTAGAAGATTTGGAA                                                                                                                                                                                                         ]
[-] EMBL CD072614             [           CTAACCCTGGAGAAGTAATATATTATGCTTTGAATGAAAGTTCTGGTGAAACTAGAAAGGTACCACTAAAACCTGAACGAACCAGTGATAATCCATTCCTGGGACTGGCTTTCAAACTGGAAGCTAGTAAATTTGGTCAGTTAACTTAT                                                                                                                                                                                                                                                                                                                                 ]




>consensus_8854#0
GGATTATTTGCCTAACCCTGGAGAAGTAATATATTATGCTTTGAATGAAAGTTCTGGTGA
AACTAGAAAGGTACCACTAAAACCTGAACGAACCAGTGATAATCCATTCCTGGGACTGGC
TTTCAAACTGGAAGCTAGTAAATTTGGTCAGTTAACTTATATGCGTATCTACCAAGGTTG
TTTACGTCGTGGTGATTCAGTGAGAAATTCTCGTACAGGTCGTCGTATTCGTGTATCTCG
ACTTGGTCGATTAAATGTTACAGAATTAGAAGATTTGGAAGCTGTATATGCAGGAGATAT
TGCTGCATTTTTTGGTGTTGATTGTGCATCTGGTGATACAATGGTTGATGTAAATATGAA
AGAACCATTAGCTATGGAATCAATGTTCATCCCAGAACCAGTTGTATCAATGTCAATTAA
ACCGACAAATAGATCAACTGTTGAATTATTTAGTACAGGTTTATCACGATTTACACGTGA

consensusID : consensus_8854#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 160
fasta sequence

                              [GAATTCGGCACGAGGATCAATGTCAATTAAACCGACAAATAGATCAACTGTTGAATTATTTAGTAAAGGTTTATCACGATTTACACGTGAAGATCCAACGTTTATTCTTTCACAAGATTCTGATACTGGTGAATCAATAGTGTCTGGTATGGGAGATTAC]

[+] EMBL CD077409             [GAATTCGGCACGAGGATCAATGTCAATTAAACCGACAAATAGATCAACTGTTGAATTATTTAGTAAAGGTTTATCACGATTTACACGTGAAGATCCAACGTTTATTCTTTCACAAGATTCTGATACTGGTGAATCAATAGTGTCTGGTATGGGAGATTAC]




>consensus_8854#1
GAATTCGGCACGAGGATCAATGTCAATTAAACCGACAAATAGATCAACTGTTGAATTATT
TAGTAAAGGTTTATCACGATTTACACGTGAAGATCCAACGTTTATTCTTTCACAAGATTC
TGATACTGGTGAATCAATAGTGTCTGGTATGGGAGATTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8854#0      GGATTATTTGCCTAACCCTGGAGAAGTAATATATTATGCTTTGAATGAAAGTTCTGGTGA 60
consensus_8854#1      ------------------------------------------------------------
                                                                                  

consensus_8854#0      AACTAGAAAGGTACCACTAAAACCTGAACGAACCAGTGATAATCCATTCCTGGGACTGGC 120
consensus_8854#1      ---------------------------------------GAATTCGGCACGAGGATCAAT 21
                                                              *** *    *  ***     

consensus_8854#0      TT---TCAAACTGGAAGCTAGTAAATTTGGTCAGTTAACTTATATGCGTATCTACCAAGG 177
consensus_8854#1      GTCAATTAAACCGACAAATAGATCAACTGTTGAATTATTTAGTAAAGGT--TTATCACGA 79
                       *   * **** *  *  ***   *  ** * * ***  *  **   **   ** ** * 

consensus_8854#0      TTGTTTACGTCGTGGTGATTCAGTGAGAAATTCTCGTACAGGTCGTCGTATTCGTGTATC 237
consensus_8854#1      ---TTTACA-CGTGAAGATCCAACGTTTATTCTTTCACAAGATTCTGATACTGGTGAATC 135
                         *****  ****  *** **  *   * *  *     ** *  *  ** * *** ***

consensus_8854#0      TCGACTTGGTCG-ATTAAATGTTACAGAATTAGAAGATTTGGAAGCTGTATATGCAGGAG 296
consensus_8854#1      AATAGTGTCTGGTATGGGAGATTAC----------------------------------- 160
                         * *   * * **   *  ****                                   

consensus_8854#0      ATATTGCTGCATTTTTTGGTGTTGATTGTGCATCTGGTGATACAATGGTTGATGTAAATA 356
consensus_8854#1      ------------------------------------------------------------
                                                                                  

consensus_8854#0      TGAAAGAACCATTAGCTATGGAATCAATGTTCATCCCAGAACCAGTTGTATCAATGTCAA 416
consensus_8854#1      ------------------------------------------------------------
                                                                                  

consensus_8854#0      TTAAACCGACAAATAGATCAACTGTTGAATTATTTAGTACAGGTTTATCACGATTTACAC 476
consensus_8854#1      ------------------------------------------------------------
                                                                                  

consensus_8854#0      GTGA 480
consensus_8854#1      ----