cluster # 8857

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Schistosoma mansoni
cluster # 8857 cluster # 8857 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8857#0 length = 982 sequences # 4

consensus_8857#1 length = 454 sequences # 2
consensus_8857#2 length = 294 sequences # 1

consensusID : consensus_8857#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 982
fasta sequence

                              [GGCTCTGGTCAATAAATGGGGCACGGCCGGCAGCCATATCGATAATCTTCTTTTGCGAAATCTCCCATACTGTCTTGTACAAAGGTTTTAGCTCCTTAGGAATTCCGTCGATATGTTGAATAGAACCCTGATTCAAAACAATCGCTGTTTTAAGTTCTTCCGACCACAACTCTAATTTAGTAAGATCGTCAAGAAGATAAGGGTTCACAATCTGGAATTCACCACTCAACACACGGCGAGAAAATACGTTGCTTGTGAAAGGTTCAGTCGACTCATGGTTCCCAAGAATCTGAGATGTTGATGCTGTTGGCATAGGGGCCAACAGAAGACTATTGCGCAGACCATACTTATTTATTCGAGCACGTAATCCACTCCAATCTAAACCAGACACCTTGGAAAGCTCCTCCGTATCTACACCCCACATATCAGGTTGAAGTATACCCTTACTGACAGGAGAACCTTGATATGATTCATATGTCCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGACGCAAAGTACATTGTTTCAAATATACGTTTATTAAGGTCAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAAAATGCATCTGCCAGACCTTGAACCCCAATACCAATCGGCCGATGACGCATGTTTGATCTGCGAGCCTCTTCAACTGGATAAAAGGTAACATCAATGACCTTGTTTAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAGCTTAGCGAAATCGAACGTAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAGCCAAATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCCGTGCATAGATTGCTGCAACGAATTGTGCCTAGATGCTGGTGATTTGATTTACGATTGCAAGAATCCTTGTACAACATGAATGGATTGCCTGTTTCAATCTGACATTCAATAATAGCGTACCATAGCTCTTGGGCTTT]

[+] EMBL CD128154             [GGCTCTGGTCAATAAATGGGGCACGGCCGGCAGCCATATCGATAATCTTCTTTTGCGAAATCTCCCATACTGTCTTGTACAAAGGTTTTAGCTCCTTAGGAATTCCGTCGATATGTTGAATAGAACCCTGATTCAAAACAATCGCTGTTTTAAGTTCTTCCGACCACAACTCTAATTTAGTAAGATCGTCAAGAAGATAAGGGTTCACAATCTGGAATTCACCACTCAACACACGGCGAGAAAATACGTTGCTTGTGAAAGGTTCAGTCGACTCATGGTTCCCAAGAATCTGAGATGTTGATGCTGTTGGCATAGGGGCCAACAGAAGACTATTGCGCAGACCATACTTATTTATTCGAGCACGTAATCCACTCCAATCTAAACCAGACACCTTGGAAAGCTCCTCCGTATCTACACCCCACATATCAGGTTGAAGTATACCCTTACTGACAGGAGAACCTTGATATGATTCATATGTCCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGACGCAAAGTACATTGTTTCAAATATACGTTTATTAAGGTCAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAAAATG                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD190459             [                                                              TCCCATACTGTCTTGTACAAAGGTTTTAGCTCCTTAGGAATTCCGTCGATATGTTGAATAGAACCCTGATTCAAAACAATCGCTGTTTTAAGTTCTTCCGGGCGGGGGTGTAATTTAGTAAGATCATCAAGAAGATAAGGGTTCACAATCTGGAATTCACCACTCAACACACGGCGAGAAAATACGTTGCTTGTGAAAGGTTCAGTCGACTCATTGTTCCCAAGAATCTGAGATGTTGATGCTGTTGGCATAGGGGCCAACAGAAGACTATTGCGCAGTCCATACTTATTTATTCGAGCACGTAATCCACTCCAAgaagc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD201409             [                                                                                                                                                                                                                                                                                                                                                                                                                                                         CCTTACTGACAGGAGAACCTTGATATGATTCATATGTCCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGATGCAAAGTACATTGTTTCAAATATACGTTTATTAAGGTCAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAAAATGCATCTGCCAGACCTTGAACCCCAATACCAATCGGCCGATGACGCATGTTTGATCTGCGAGCCTCTTCAACTGGATAAAAGGTAACATCAATGACCTTGTTTAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAGCTTAGCGAAATCGAACGTAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAGCCAAATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCCGTGCATAGATTGCTGCAACGAATTGTGCCTAGATGCTGGTGATTTGATTTACGATTGCAAGAATCCTTGTACAACATGAATGGATTGCCTGTTTCAATCTGACATTCAATAATAGCGTACCATAGCTCTTGGGCTTT]
[-] EMBL CD071945             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AGCCGCTTCTGGACTATCAAA GGATACCTCAAAAGACAAAATGCATCTGCCAGACCTTGAACCCCAATACCAATCGGCCGATGACGCATGTTTGATCTGCGAGCCTCTTCAACTGGATAAAAGGTAACATCAATGACCTTGTTTAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAGCTTAGCGAAATCGAACGTAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAGCCAAATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCCGTGCATAGATTGCTGCAACGAATTGTGCCTAGATGCTGGTGATTTGATTTACGATTGCAAGAATCCTTGTACAACATGAATGGATTGCCTGTTTCAATCTGACATTCAATAA                         ]




>consensus_8857#0
GGCTCTGGTCAATAAATGGGGCACGGCCGGCAGCCATATCGATAATCTTCTTTTGCGAAA
TCTCCCATACTGTCTTGTACAAAGGTTTTAGCTCCTTAGGAATTCCGTCGATATGTTGAA
TAGAACCCTGATTCAAAACAATCGCTGTTTTAAGTTCTTCCGACCACAACTCTAATTTAG
TAAGATCGTCAAGAAGATAAGGGTTCACAATCTGGAATTCACCACTCAACACACGGCGAG
AAAATACGTTGCTTGTGAAAGGTTCAGTCGACTCATGGTTCCCAAGAATCTGAGATGTTG
ATGCTGTTGGCATAGGGGCCAACAGAAGACTATTGCGCAGACCATACTTATTTATTCGAG
CACGTAATCCACTCCAATCTAAACCAGACACCTTGGAAAGCTCCTCCGTATCTACACCCC
ACATATCAGGTTGAAGTATACCCTTACTGACAGGAGAACCTTGATATGATTCATATGTCC
CTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGACGCAAAGTACATTGTTTCAAATA
TACGTTTATTAAGGTCAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAAAATG
CATCTGCCAGACCTTGAACCCCAATACCAATCGGCCGATGACGCATGTTTGATCTGCGAG
CCTCTTCAACTGGATAAAAGGTAACATCAATGACCTTGTTTAAATTTCTGGTTACGACTT
TTGTAACTTCTTGTAGCTTAGCGAAATCGAACGTAAGATTATCTCGATTAACAAATTTTC
CCAATGAAATCGAAGCCAAATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTA
TTTCCGTGCATAGATTGCTGCAACGAATTGTGCCTAGATGCTGGTGATTTGATTTACGAT
TGCAAGAATCCTTGTACAACATGAATGGATTGCCTGTTTCAATCTGACATTCAATAATAG
CGTACCATAGCTCTTGGGCTTT

consensusID : consensus_8857#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 454
fasta sequence

                              [AAAGGTAACATCAATGACCTTGTTTAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAGCTTAGCGAAATCGAACGTAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAG-CCAAATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCCGTGCATAGATTGCTGCAACGAATTGTGCCTAGATGCTGGTGATTTGATTTACGATTGCAAGAATCCTTGTACAACATGAATGGATTGCCTGTTTCAATCTGACATTCAATAATAGCGTACCTTAAATATATTTGAGTTCGCAAAATTTGTCCTACAACTACGCGTTAGGGCGAATACGTTAAATCTCGTTTGATAAACATGCAACAGAGCGATTGTTGCATCCATTCGGTTTTTGTTCAGTTTGATAAATTAGTGCAAAATAATTACGTACGCTTTATCATAAAA]

[-] EMBL CD190691             [AAAGGTAACATCAATGACCTTGTTTAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAGCTTAGCGAAATCGAACGTAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAG CCAAATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCCGTGCATAGATTGCTGCAACGAATTGTGCCTAGATGCTGGTGATTTGATTTACGATTGCAAGAATCCTTGTACAACATGAATGGATTGCCTGTTTCAATCTGACATTCAATAATAGCGTACCTTAAATATATTTGAGTTCGCAAAATTTGTCCTACAACTACGCGTTAGGGCGAATACGTTAAATCTCGTTTGATAAACATGCAACAGAGCGATTGTTGCATCCATTCGGTTTTTGTTCAGTTTGATAAATTAGTGCAAAATAATTACGTACGCTTTATCATAAAA]
[+] EMBL CD138515             [                                                  CTTCTTGTAGCTTAGCGAAATCGAACGTAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAGNCCAAA TACAGACAGCTG                                                                                                                                                                                                                                                                                                                             ]




>consensus_8857#1
AAAGGTAACATCAATGACCTTGTTTAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAG
CTTAGCGAAATCGAACGTAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAGC
CAAATTACAGACAGCTGTTTCGTCTGGTGAAGAATACTCAACTATTTCCGTGCATAGATT
GCTGCAACGAATTGTGCCTAGATGCTGGTGATTTGATTTACGATTGCAAGAATCCTTGTA
CAACATGAATGGATTGCCTGTTTCAATCTGACATTCAATAATAGCGTACCTTAAATATAT
TTGAGTTCGCAAAATTTGTCCTACAACTACGCGTTAGGGCGAATACGTTAAATCTCGTTT
GATAAACATGCAACAGAGCGATTGTTGCATCCATTCGGTTTTTGTTCAGTTTGATAAATT
AGTGCAAAATAATTACGTACGCTTTATCATAAAA

consensusID : consensus_8857#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 294
fasta sequence

                              [TCCTCTGTATTAACACCCCACATATCAGGTTGAAGTATACCCTTACTGACAGGAGAACCTTGATATGATTCATATGTCCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGATGCAAAGTACATTGTTTCAAATATACGTTTATTAAGGTCAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAAAATGCATCTGCCAGCTAGCGGTTGACCAAGGGACATATGAATCATATCAAGGTTCTCCTGTCAGTAAGGGTATACTTCAACCTGATATGGGGGGTGTTT]

[-] EMBL CD131471             [TCCTCTGTATTAACACCCCACATATCAGGTTGAAGTATACCCTTACTGACAGGAGAACCTTGATATGATTCATATGTCCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGATGCAAAGTACATTGTTTCAAATATACGTTTATTAAGGTCAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAAAATGCATCTGCCAGCTAGCGGTTGACCAAGGGACATATGAATCATATCAAGGTTCTCCTGTCAGTAAGGGTATACTTCAACCTGATATGGGGGGTGTTT]




>consensus_8857#2
TCCTCTGTATTAACACCCCACATATCAGGTTGAAGTATACCCTTACTGACAGGAGAACCT
TGATATGATTCATATGTCCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGATGCA
AAGTACATTGTTTCAAATATACGTTTATTAAGGTCAGCCGCTTCTGGACTATCAAAGGGA
TACCTCAAAAGACAAAATGCATCTGCCAGCTAGCGGTTGACCAAGGGACATATGAATCAT
ATCAAGGTTCTCCTGTCAGTAAGGGTATACTTCAACCTGATATGGGGGGTGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8857#0      GGCTCTGGTCAATAAATGGGGCACGGCCGGCAGCCATATCGATAATCTTCTTTTGCGAAA 60
consensus_8857#2      ------------------------------------------------------------
consensus_8857#1      ------------------------------------------------------------
                                                                                  

consensus_8857#0      TCTCCCATACTGTCTTGTACAAAGGTTTTAGCTCCTTAGGAATTCCGTCGATATGTTGAA 120
consensus_8857#2      ------------------------------------------------------------
consensus_8857#1      ------------------------------------------------------------
                                                                                  

consensus_8857#0      TAGAACCCTGATTCAAAACAATCGCTGTTTTAAGTTCTTCCGACCACAACTCTAATTTAG 180
consensus_8857#2      ------------------------------------------------------------
consensus_8857#1      ------------------------------------------------------------
                                                                                  

consensus_8857#0      TAAGATCGTCAAGAAGATAAGGGTTCACAATCTGGAATTCACCACTCAACACACGGCGAG 240
consensus_8857#2      ------------------------------------------------------------
consensus_8857#1      ------------------------------------------------------------
                                                                                  

consensus_8857#0      AAAATACGTTGCTTGTGAAAGGTTCAGTCGACTCATGGTTCCCAAGAATCTGAGATGTTG 300
consensus_8857#2      ------------------------------------------------------------
consensus_8857#1      -------------------------------------------AAAGGTAACATCAATGA 17
                                                                                  

consensus_8857#0      ATGCTGTTGGCATAGGGGCCAACAGAAGACTATTGCGCAGACCATACTTATTTATTCGAG 360
consensus_8857#2      ------------------------------------------------------------
consensus_8857#1      CCTTGTTTAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAGCTTAGCGAAATCGAACG 77
                                                                                  

consensus_8857#0      CACGTAATCCACTCCAATCTAAACCAGACACCTTGGAAAGCTCCTCCGTATCTACACCCC 420
consensus_8857#2      -----------------------------------------TCCTCTGTATTAACACCCC 19
consensus_8857#1      TAAGATTATCTCGATTAACAAATTTTCCCAATGAAATCGAAGCCAAATTACAGACAGCTG 137
                                                                **    **   *** *  

consensus_8857#0      ACATATCAGGTTGAAGTATACCC--TTACTGACAGGAGAACCTTGATATGATTCATATGT 478
consensus_8857#2      ACATATCAGGTTGAAGTATACCC--TTACTGACAGGAGAACCTTGATATGATTCATATGT 77
consensus_8857#1      TTTCGTCTGGT-GAAGAATACTCAACTATTTCCGTGCATAGATTGCTGCAACGAAT-TGT 195
                           ** *** **** **** *   ** *  *  *   *  *** *   *   ** ***

consensus_8857#0      CCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGACGCAAAGTACATTGTTTCAAA 538
consensus_8857#2      CCCTTGGTCAACCGCTAGCTGGCATGACGCATCCAGAGATGCAAAGTACATTGTTTCAAA 137
consensus_8857#1      GCCTAGAT--GCTGGTGATTTGATTTACGATTGCAAGAATCCTT-GTACAACATGAATGG 252
                       *** * *   * * *   * *  * ***  * **   *  *   *****   *      

consensus_8857#0      TATACGTTTATTAAGGT--CAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAA 596
consensus_8857#2      TATACGTTTATTAAGGT--CAGCCGCTTCTGGACTATCAAAGGGATACCTCAAAAGACAA 195
consensus_8857#1      ATTGCCTGTTTCAATCTGACATTCAATAATAGCGTACCTTAAATATATTTGAGTTCGCAA 312
                        * * * * * **  *  **  *  *  * *  ** *  *   ***  * *     ***

consensus_8857#0      AATGCATCTGCCAGACCTTGAACCCCAATACCAATCG-GCCGATG-ACGCATGTTTGATC 654
consensus_8857#2      AATGCATCTGCCAGC-------------TAGCGGTTG-ACCAAGGGACATATGAATCATA 241
consensus_8857#1      AATTTGTCCTACAAC----TACGCGTTAGGGCGAATACGTTAAATCTCGTTTGATAAACA 368
                      ***   **   **                  *          *    *   **    *  

consensus_8857#0      TGCGA------GCCTCTTCAACTGGATAAAAGGTAACATCAA--TGACC------TTGTT 700
consensus_8857#2      T-CAA------GGTTCTCCTGTCAG-TAAGGGTATACTTCAACCTGATA------TGGGG 287
consensus_8857#1      TGCAACAGAGCGATTGTTGCATCCA-TTCGGTTTTTGTTCAGTTTGATAAATTAGTGCAA 427
                      * * *      *  * *         *           ***   ***        *    

consensus_8857#0      TAAATTTCTGGTTACGACTTTTGTAACTTCTTGTAGCTTAGCGAAATCGAACGTAAGATT 760
consensus_8857#2      GGTGTTT----------------------------------------------------- 294
consensus_8857#1      AATAATTACGTACGCTTTATCATAAAA--------------------------------- 454
                           **                                                     

consensus_8857#0      ATCTCGATTAACAAATTTTCCCAATGAAATCGAAGCCAAATTACAGACAGCTGTTTCGTC 820
consensus_8857#2      ------------------------------------------------------------
consensus_8857#1      ------------------------------------------------------------
                                                                                  

consensus_8857#0      TGGTGAAGAATACTCAACTATTTCCGTGCATAGATTGCTGCAACGAATTGTGCCTAGATG 880
consensus_8857#2      ------------------------------------------------------------
consensus_8857#1      ------------------------------------------------------------
                                                                                  

consensus_8857#0      CTGGTGATTTGATTTACGATTGCAAGAATCCTTGTACAACATGAATGGATTGCCTGTTTC 940
consensus_8857#2      ------------------------------------------------------------
consensus_8857#1      ------------------------------------------------------------
                                                                                  

consensus_8857#0      AATCTGACATTCAATAATAGCGTACCATAGCTCTTGGGCTTT 982
consensus_8857#2      ------------------------------------------
consensus_8857#1      ------------------------------------------