These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8860#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1202 fasta sequence [TATATATTGATTACATGTAAGAAATAACTTTTCCGATTCGTAAAAATAATCAAATTAGATAAAGATTTCACATTCTAAAAAAGGAAAGTATGCAACATCAACACCTTTTTAATTATGGTAGACACAAGGTGTAGTTGAATAAAGGAATGAAACTGATAATTTTAATATTTTTCAAAGACGAATCACTTGCACTTCGCAATTGAATTACAGAGAGGATAAATTGTTTTGAAATTCCTAGTCCCATTTGCACCAACAACAGTTACTACTACTTGGCTGAACTACCTGTGTGGTTTTTCGGTAGAGGGTAATTGATGATAAGGGAAAATATTTTTCATCTTGAAAATAATAATTAACGGTTTTTTATTCAGAAAAAATAGAGGAAACACATTACAAGAAAAACAAGTATCACTCTGATGTCATCCAAAAAACACAGAGATAATAACAGTATTGTTCTTGACACAAATCTCAATCAGAAAAATAAATCAAGATATTAACAATTTGAAACGAAC-AAATCAAGTGTTTATAATAAAATATTACAAGAAGAAATAGGGGAGGGAGAAACCGAACACAAATCATTGNATTCATTCTATTTATGTTTATACGAGCCTGTTTGTTTGGATATATGATTGTATATTTGTTGGTGCTAAAGGCATGCTTTGTTATTCATAATCCCATTGTTATCATAGGTATGTTGATTATTCTGAATAGAAAATTTACGATTTATATTCATCAATGGACGATTGCACATAACGCCATCATCTTCAGGTGGCGGTGCTGAAAGTGATGATACCAATTCAACACATAATGAGTGTTTCCGATTATTTTTGTTGGTAGTAGTACTAGCATCTTCACATATCACGTGCATTGTATCATCTACAAACAGATTTTTATTCGGCAAATGATGTATAACATCATGGGTTGGCTCAAGAGACAATTCATAGCTGTGGTTATATAATGCTGATGAATTTGGATGTACCTCATCATCTGAATTAGGATGCCCAACTTCCCCATTTTGTTGGAATTTACTCACTATGGGTGATTTGGATTCAAATGGTAAAGGAGTAGTAATATTAGATAACATCATGGGATTTTCCGGACTTCCCATTTCAATACTACTAATGCTACATTGACAATTAGTGGCATTACCATTGATTAGATGTAAATTTTTTAAAGATATAGTAACTTGTGCATTATTTTCTAGG] [+] EMBL CD076137 [TATATATTGATTACATGTAAGAAATAACTTTTCCGATTCGTAAAAATAATCAAATTAGATAAAGATTTCACATTCTAAAAAAGGAAAGTATGCAACATCAACACCTTTTTAATTATGGTAGACACAAGGTGTAGTTGAATAAAGGAATGAAACTGATAATTTTAATATTTTTCAAAGACGAATCACTTGCACTTCGCAATTGAATTACAGAGAGGATAAATTGTTTTGAAATTCCTAGTCCCATTTGCACCAACAACAGTTACTACTACTTGGCTGAACTACCTGTGTGGTTTTTCGGTAGAGGGTAATTGATGATAAGGGAAAATATTTTTCATCTTGAAAATAATAATTAACGGTTTTTTATTCAGAAAAAATAGAGGAAACACATTACAAGAAAAACAAGTATCACTCTGATGTCATCCAAAAAACACAGAGATAATAACAGTATTGTTCTTGACACAAATCTCAATCAGAAAAATAAATCAAGATATTAACAATTTGAAACGAAC AAATCAAGTGTTTATAATAAAATATTACAAGAAGAAATAGGGGAGGGAGAAACCGAACACAAATCATTGNATTCATTCTATTTATGTTTATACGAGCCTGTTTGTTTGGATA ] [+] EMBL CD141700 [ TTTGAAATTCCTAGTCCCATTTGCACCAACAACAGTTACTACTACTTGGCTGAACTACCTGTGTGGTTTTTCGGTAGAGGGTAATTGATGATAAGGGAAAATATTTTTCATCTTGAAAATAATAATTAACGGTTTTTTATTCAGAAAAAATAGAGGAAACACATTACAAGAAAAACAAGTATCACTCTGATGTCATCCAAAAAACACAGAGATAATAACAGTATTGTTCTTGACACAAATCTCAATCAGAAAAATAAATCAAGGTATTAACAATTTGAAACGAACAAAATC AGTGTTTATGATAAAATATTACAAGAAG AATAGGGGAGGGAGAAACCGAc ] [-] EMBL CD182319 [ GAAATTCCTAGTCCCATTTGCACCAACAACAGTTACTACTACTTGGCTGAACTACCTGTGTGGTTTTTCGGTAGAGGGTAATTGATGATAAGGGAAAATATTTTTCATCTTGAAAATAATAATTAACGGTTTTTTATTCAGAAAAAATAGAGGAAACACATTACAAGAAAAACAAGTATCACTCTGATGTCATCCAAAAAACACAGAGATAATAACAGTATTGTTCTTGACACAAATC ] [-] EMBL CD082539 [ TTCAGAAAAAATAGAGGAAACACATTACAAGAAAAACAAGTATCACTCTGATGTCATCCAAAAAACACAGAGATAATAACAGTATTGTTCTTGACACAAATCTCAATCAGAAAAATAAATCAAGATATTAACAATTTGAAACGAAC AAATCAAGTGTTTATAATAAAATATTACAAGAAGAAATAGGGGAGGGAGAAACCGAACACAAATCATTGTATTCATTCTATTTATGTTTATACGAGCCTGTTTGTTTGGATATATGATTGTATATTTGTTGGTGCTAAAGGCATGCTTTGTTATTCATAATCCCATTGTTATCATAGGTATGTTGATTATTCTGAATAGAAAATTTACGATTTATATTCATCAATGGACGATTGCACATAACGCCATCATCTTCAGGTGGCGGTGCTGAAAGTGATGATACCAATTCAACACATAATGAGTGTTTCCGATTATTTTTGTTGGTAGTAGTACTAGCATCTTCACATATCACGTGCATTGTATCATCTACAAACAGATTTTTATTCGGCAAATGATGTATAACATCATGGGTTGGCTCAAGAGACAATTCATAGCTGTGGTTATATAATGCTGATGAATTTGGATGTACC ] [-] EMBL BG930925 [ ggTCAAGAGACAATTCATAGCTGTGGTTATATAATGCTGATGAATTTGGATGTACCTCATCATCTGAATTAGGATGCCCAACTTCCCCATTTTGTTGGAATTTACTCACTATGGGTGATTTGGATTCAAATGGTAAAGGAGTAGTAATATTAGATAACATCATGGGATTTTCCGGACTTCCCATTTCAATACTACTAATGCTACATTGACAATTAGTGGCATTACCATTGATTAGATGTAAATTTTTTAAAGATATAGTAACTTGTGCATTATTTTCTAGG] consensusID : consensus_8860#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence [GATATCTCAATTACAAGTTACTCTTTTTGTTCTTTTATTGATTTGATATAATCTGCACATATGTTGCTAGATTATAGTTTATCACACTTAGAAATTTGTCATTTATTACATGAACCTCATTTTTACGTCTAGTTTTTTCAGTGTTATGATTTGTTTTCTGCTTTTTGATGCTTTAATCTATTCATTCAAAAGTAGTGAGTAAATTCCAACAAAATGGGGAAGTTGGGCATCCTAATTCAGATGATGAGGTACATCCAAATTCA] [+] EMBL CD154656 [GATATCTCAATTACAAGTTACTCTTTTTGTTCTTTTATTGATTTGATATAATCTGCACATATGTTGCTAGATTATAGTTTATCACACTTAGAAATTTGTCATTTATTACATGAACCTCATTTTTACGTCTAGTTTTTTCAGTGTTATGATTTGTTTTCTGCTTTTTGATGCTTTAATCTATTCATTCAAAAGTAGTGAGTAAATTCCAACAAAATGGGGAAGTTGGGCATCCTAATTCAGATGATGAGGTACATCCAAATTCA] consensusID : consensus_8860#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 249 fasta sequence [GTATCATCTACAAACAGATTTTTATTCGGCAAATGATGTATAACATCATGGGTTGGCTCAAGAGACAATTCATAGCTGTGGTTATATAATGCTGATGAATTTGGATGTACCTCATCATCTGAATTAGGATGCCCAACTTCCCCATTTTGTTGGAATTTACTCATGGGTGATTTGGATTCAAATGGTAAAGGAGTAGTAATATTAGATAACATCATGGGATTTTCCGGACTTCCCATTTCCCTCGGACCG] [-] EMBL CD077830 [GTATCATCTACAAACAGATTTTTATTCGGCAAATGATGTATAACATCATGGGTTGGCTCAAGAGACAATTCATAGCTGTGGTTATATAATGCTGATGAATTTGGATGTACCTCATCATCTGAATTAGGATGCCCAACTTCCCCATTTTGTTGGAATTTACTCATGGGTGATTTGGATTCAAATGGTAAAGGAGTAGTAATATTAGATAACATCATGGGATTTTCCGGACTTCCCATTTCCCTCGGACCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8860#0 TATATATTGATTACATGTAAGAAATAACTTTTCCGATTCGTAAAAATAATCAAATTAGAT 60 consensus_8860#2 ------------------------------------------------------------ consensus_8860#1 ------------------------------------------------------------ consensus_8860#0 AAAGATTTCACATTCTAAAAAAGGAAAGTATGCAACATCAACACCTTTTTAATTATGGTA 120 consensus_8860#2 ------------------------------------------------------------ consensus_8860#1 ------------------------------------------------------------ consensus_8860#0 GACACAAGGTGTAGTTGAATAAAGGAATGAAACTGATAATTTTAATATTTTTCAAAGACG 180 consensus_8860#2 ------------------------------------------------------------ consensus_8860#1 ------------------------------------------------------------ consensus_8860#0 AATCACTTGCACTTCGCAATTGAATTACAGAGAGGATAAATTGTTTTGAAATTCCTAGTC 240 consensus_8860#2 ------------------------------------------------------------ consensus_8860#1 ------------------------------------------------------------ consensus_8860#0 CCATTTGCACCAACAACAGTTACTACTACTTGGCTGAACTACCTGTGTGGTTTTTCGGTA 300 consensus_8860#2 ------------------------------------------------------------ consensus_8860#1 ------------------------------------------------------------ consensus_8860#0 GAGGGTAATTGATGATAAGGGAAAATATTTTTCATCTTGAAAATAATAATTAACGGTTTT 360 consensus_8860#2 ------------------------------------------------------------ consensus_8860#1 ------------------------------------------------------------ consensus_8860#0 TTATTCAGAAAAAATAGAGGAAACACATTACAAGAAAAACAAGTATCACTCTGATGTCAT 420 consensus_8860#2 ------------------------------------------------------------ consensus_8860#1 ------------------------------------------------------------ consensus_8860#0 CCAAAAAACACAGAGATAATAACAGTATTGTTCTTGACACAAATCTCAATCAGAAAAATA 480 consensus_8860#2 ------------------------------------------------------------ consensus_8860#1 ------------------------------------------------------------ consensus_8860#0 AATCAAGATATTAACAATTTGAAACGAACAAATCAAGTGTTTATAATAAAATATTACAAG 540 consensus_8860#2 ------------------------------------------------------------ consensus_8860#1 ------------------------------------------------------------ consensus_8860#0 AAGAAATAGGGGAGGGAGAAACCGAACACAAATCATTGNATTCATTCTATTTATGTTTAT 600 consensus_8860#2 ------------------------------------------------------------ consensus_8860#1 ------------------------------------------------------------ consensus_8860#0 ACGAGCCTGTTTGTTTGGATATATGATTGTATATTTGTTGGTGCTAAAGGCATGCTTTGT 660 consensus_8860#2 ------------------------------------------------------------ consensus_8860#1 ------------------------------------------------------------ consensus_8860#0 TATTCATAATCCCATTGTTATCATAGGTATGTTGATTATTCTGAATAGAAAATTTACGAT 720 consensus_8860#2 ------------------------------------------------------------ consensus_8860#1 ------------------------------------------------------------ consensus_8860#0 TTATATTCATCAATGGACGATTGCACATAACGCCATCATCTTCAGGTGGCGGTGCTGAAA 780 consensus_8860#2 ------------------------------------------------------------ consensus_8860#1 ------------------------------------------------------------ consensus_8860#0 GTGATGATACCAATTCAACACATAATGAGTGTTTCCGATTATTTTTGTTGGTAGTAGTAC 840 consensus_8860#2 ------------------------------------------------------------ consensus_8860#1 ------------------------------------------------------------ consensus_8860#0 TAGCATCTTCACATATCACGTGCATTGTATCATCTACAAACAGAT--TTTTATTCGGCAA 898 consensus_8860#2 --------------------------GTATCATCTACAAACAGAT--TTTTATTCGGCAA 32 consensus_8860#1 -----------------------GATATCTCAATTACAAGTTACTCTTTTTGTTCTTTTA 37 * *** ***** * **** *** * consensus_8860#0 ATGATGTATAACATCATGGGTTGGCTCAAGAGACAATTCATAGCTGTGGTTATATAATGC 958 consensus_8860#2 ATGATGTATAACATCATGGGTTGGCTCAAGAGACAATTCATAGCTGTGGTTATATAATGC 92 consensus_8860#1 TTGATTT--GATATAAT-------CTGCACATATGTTGCTAGATTATAGTT-TATCACAC 87 **** * * ** ** ** * * * * * * * *** *** * * consensus_8860#0 TGATGAATTTGG-ATGTACCTCATCATCTGAATTAGGATGCCCAACTTCCCCATTTTGTT 1017 consensus_8860#2 TGATGAATTTGG-ATGTACCTCATCATCTGAATTAGGATGCCCAACTTCCCCATTTTGTT 151 consensus_8860#1 TTAGAAATTTGTCATTTATTACATGAACCTCATTTTTACGTCTAGTTTTTTCAGTGTTAT 147 * * ****** ** ** *** * * *** * * * * ** ** * * * consensus_8860#0 GGA--ATTTACTCACTATGGGTGATTTGGATTCAAATGGTAAAGGAGTAGTAA-TATTAG 1074 consensus_8860#2 GGA--ATTTACTCA---TGGGTGATTTGGATTCAAATGGTAAAGGAGTAGTAA-TATTAG 205 consensus_8860#1 GATTTGTTTTCTGCTTTTTGATGCTTTAA--TCTATTCATTCAAAAGTAGTGAGTAAATT 205 * *** ** * * ** *** ** * * * * ****** * ** consensus_8860#0 ATAACATCATGGGATTTTCCGGACTTCCCATTTCAATACTACTAATGCTACATTGACAAT 1134 consensus_8860#2 ATAACATCATGGGATTTTCCGGACTTCCCATTTCCCTCGGACCG---------------- 249 consensus_8860#1 CCAACAAAATGGGGAAGTTGGGCATCCTAATTCAGATGATGAGGTACATCCAAATTCA-- 263 **** ***** * ** * * *** * consensus_8860#0 TAGTGGCATTACCATTGATTAGATGTAAATTTTTTAAAGATATAGTAACTTGTGCATTAT 1194 consensus_8860#2 ------------------------------------------------------------ consensus_8860#1 ------------------------------------------------------------ consensus_8860#0 TTTCTAGG 1202 consensus_8860#2 -------- consensus_8860#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||