cluster # 8860

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Schistosoma mansoni
cluster # 8860 cluster # 8860 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8860#0 length = 1202 sequences # 5

consensus_8860#1 length = 263 sequences # 1
consensus_8860#2 length = 249 sequences # 1

consensusID : consensus_8860#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1202
fasta sequence

                              [TATATATTGATTACATGTAAGAAATAACTTTTCCGATTCGTAAAAATAATCAAATTAGATAAAGATTTCACATTCTAAAAAAGGAAAGTATGCAACATCAACACCTTTTTAATTATGGTAGACACAAGGTGTAGTTGAATAAAGGAATGAAACTGATAATTTTAATATTTTTCAAAGACGAATCACTTGCACTTCGCAATTGAATTACAGAGAGGATAAATTGTTTTGAAATTCCTAGTCCCATTTGCACCAACAACAGTTACTACTACTTGGCTGAACTACCTGTGTGGTTTTTCGGTAGAGGGTAATTGATGATAAGGGAAAATATTTTTCATCTTGAAAATAATAATTAACGGTTTTTTATTCAGAAAAAATAGAGGAAACACATTACAAGAAAAACAAGTATCACTCTGATGTCATCCAAAAAACACAGAGATAATAACAGTATTGTTCTTGACACAAATCTCAATCAGAAAAATAAATCAAGATATTAACAATTTGAAACGAAC-AAATCAAGTGTTTATAATAAAATATTACAAGAAGAAATAGGGGAGGGAGAAACCGAACACAAATCATTGNATTCATTCTATTTATGTTTATACGAGCCTGTTTGTTTGGATATATGATTGTATATTTGTTGGTGCTAAAGGCATGCTTTGTTATTCATAATCCCATTGTTATCATAGGTATGTTGATTATTCTGAATAGAAAATTTACGATTTATATTCATCAATGGACGATTGCACATAACGCCATCATCTTCAGGTGGCGGTGCTGAAAGTGATGATACCAATTCAACACATAATGAGTGTTTCCGATTATTTTTGTTGGTAGTAGTACTAGCATCTTCACATATCACGTGCATTGTATCATCTACAAACAGATTTTTATTCGGCAAATGATGTATAACATCATGGGTTGGCTCAAGAGACAATTCATAGCTGTGGTTATATAATGCTGATGAATTTGGATGTACCTCATCATCTGAATTAGGATGCCCAACTTCCCCATTTTGTTGGAATTTACTCACTATGGGTGATTTGGATTCAAATGGTAAAGGAGTAGTAATATTAGATAACATCATGGGATTTTCCGGACTTCCCATTTCAATACTACTAATGCTACATTGACAATTAGTGGCATTACCATTGATTAGATGTAAATTTTTTAAAGATATAGTAACTTGTGCATTATTTTCTAGG]

[+] EMBL CD076137             [TATATATTGATTACATGTAAGAAATAACTTTTCCGATTCGTAAAAATAATCAAATTAGATAAAGATTTCACATTCTAAAAAAGGAAAGTATGCAACATCAACACCTTTTTAATTATGGTAGACACAAGGTGTAGTTGAATAAAGGAATGAAACTGATAATTTTAATATTTTTCAAAGACGAATCACTTGCACTTCGCAATTGAATTACAGAGAGGATAAATTGTTTTGAAATTCCTAGTCCCATTTGCACCAACAACAGTTACTACTACTTGGCTGAACTACCTGTGTGGTTTTTCGGTAGAGGGTAATTGATGATAAGGGAAAATATTTTTCATCTTGAAAATAATAATTAACGGTTTTTTATTCAGAAAAAATAGAGGAAACACATTACAAGAAAAACAAGTATCACTCTGATGTCATCCAAAAAACACAGAGATAATAACAGTATTGTTCTTGACACAAATCTCAATCAGAAAAATAAATCAAGATATTAACAATTTGAAACGAAC AAATCAAGTGTTTATAATAAAATATTACAAGAAGAAATAGGGGAGGGAGAAACCGAACACAAATCATTGNATTCATTCTATTTATGTTTATACGAGCCTGTTTGTTTGGATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD141700             [                                                                                                                                                                                                                                TTTGAAATTCCTAGTCCCATTTGCACCAACAACAGTTACTACTACTTGGCTGAACTACCTGTGTGGTTTTTCGGTAGAGGGTAATTGATGATAAGGGAAAATATTTTTCATCTTGAAAATAATAATTAACGGTTTTTTATTCAGAAAAAATAGAGGAAACACATTACAAGAAAAACAAGTATCACTCTGATGTCATCCAAAAAACACAGAGATAATAACAGTATTGTTCTTGACACAAATCTCAATCAGAAAAATAAATCAAGGTATTAACAATTTGAAACGAACAAAATC AGTGTTTATGATAAAATATTACAAGAAG AATAGGGGAGGGAGAAACCGAc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD182319             [                                                                                                                                                                                                                                   GAAATTCCTAGTCCCATTTGCACCAACAACAGTTACTACTACTTGGCTGAACTACCTGTGTGGTTTTTCGGTAGAGGGTAATTGATGATAAGGGAAAATATTTTTCATCTTGAAAATAATAATTAACGGTTTTTTATTCAGAAAAAATAGAGGAAACACATTACAAGAAAAACAAGTATCACTCTGATGTCATCCAAAAAACACAGAGATAATAACAGTATTGTTCTTGACACAAATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD082539             [                                                                                                                                                                                                                                                                                                                                                                           TTCAGAAAAAATAGAGGAAACACATTACAAGAAAAACAAGTATCACTCTGATGTCATCCAAAAAACACAGAGATAATAACAGTATTGTTCTTGACACAAATCTCAATCAGAAAAATAAATCAAGATATTAACAATTTGAAACGAAC AAATCAAGTGTTTATAATAAAATATTACAAGAAGAAATAGGGGAGGGAGAAACCGAACACAAATCATTGTATTCATTCTATTTATGTTTATACGAGCCTGTTTGTTTGGATATATGATTGTATATTTGTTGGTGCTAAAGGCATGCTTTGTTATTCATAATCCCATTGTTATCATAGGTATGTTGATTATTCTGAATAGAAAATTTACGATTTATATTCATCAATGGACGATTGCACATAACGCCATCATCTTCAGGTGGCGGTGCTGAAAGTGATGATACCAATTCAACACATAATGAGTGTTTCCGATTATTTTTGTTGGTAGTAGTACTAGCATCTTCACATATCACGTGCATTGTATCATCTACAAACAGATTTTTATTCGGCAAATGATGTATAACATCATGGGTTGGCTCAAGAGACAATTCATAGCTGTGGTTATATAATGCTGATGAATTTGGATGTACC                                                                                                                                                                                                                                 ]
[-] EMBL BG930925             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ggTCAAGAGACAATTCATAGCTGTGGTTATATAATGCTGATGAATTTGGATGTACCTCATCATCTGAATTAGGATGCCCAACTTCCCCATTTTGTTGGAATTTACTCACTATGGGTGATTTGGATTCAAATGGTAAAGGAGTAGTAATATTAGATAACATCATGGGATTTTCCGGACTTCCCATTTCAATACTACTAATGCTACATTGACAATTAGTGGCATTACCATTGATTAGATGTAAATTTTTTAAAGATATAGTAACTTGTGCATTATTTTCTAGG]




>consensus_8860#0
TATATATTGATTACATGTAAGAAATAACTTTTCCGATTCGTAAAAATAATCAAATTAGAT
AAAGATTTCACATTCTAAAAAAGGAAAGTATGCAACATCAACACCTTTTTAATTATGGTA
GACACAAGGTGTAGTTGAATAAAGGAATGAAACTGATAATTTTAATATTTTTCAAAGACG
AATCACTTGCACTTCGCAATTGAATTACAGAGAGGATAAATTGTTTTGAAATTCCTAGTC
CCATTTGCACCAACAACAGTTACTACTACTTGGCTGAACTACCTGTGTGGTTTTTCGGTA
GAGGGTAATTGATGATAAGGGAAAATATTTTTCATCTTGAAAATAATAATTAACGGTTTT
TTATTCAGAAAAAATAGAGGAAACACATTACAAGAAAAACAAGTATCACTCTGATGTCAT
CCAAAAAACACAGAGATAATAACAGTATTGTTCTTGACACAAATCTCAATCAGAAAAATA
AATCAAGATATTAACAATTTGAAACGAACAAATCAAGTGTTTATAATAAAATATTACAAG
AAGAAATAGGGGAGGGAGAAACCGAACACAAATCATTGNATTCATTCTATTTATGTTTAT
ACGAGCCTGTTTGTTTGGATATATGATTGTATATTTGTTGGTGCTAAAGGCATGCTTTGT
TATTCATAATCCCATTGTTATCATAGGTATGTTGATTATTCTGAATAGAAAATTTACGAT
TTATATTCATCAATGGACGATTGCACATAACGCCATCATCTTCAGGTGGCGGTGCTGAAA
GTGATGATACCAATTCAACACATAATGAGTGTTTCCGATTATTTTTGTTGGTAGTAGTAC
TAGCATCTTCACATATCACGTGCATTGTATCATCTACAAACAGATTTTTATTCGGCAAAT
GATGTATAACATCATGGGTTGGCTCAAGAGACAATTCATAGCTGTGGTTATATAATGCTG
ATGAATTTGGATGTACCTCATCATCTGAATTAGGATGCCCAACTTCCCCATTTTGTTGGA
ATTTACTCACTATGGGTGATTTGGATTCAAATGGTAAAGGAGTAGTAATATTAGATAACA
TCATGGGATTTTCCGGACTTCCCATTTCAATACTACTAATGCTACATTGACAATTAGTGG
CATTACCATTGATTAGATGTAAATTTTTTAAAGATATAGTAACTTGTGCATTATTTTCTA
GG

consensusID : consensus_8860#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 263
fasta sequence

                              [GATATCTCAATTACAAGTTACTCTTTTTGTTCTTTTATTGATTTGATATAATCTGCACATATGTTGCTAGATTATAGTTTATCACACTTAGAAATTTGTCATTTATTACATGAACCTCATTTTTACGTCTAGTTTTTTCAGTGTTATGATTTGTTTTCTGCTTTTTGATGCTTTAATCTATTCATTCAAAAGTAGTGAGTAAATTCCAACAAAATGGGGAAGTTGGGCATCCTAATTCAGATGATGAGGTACATCCAAATTCA]

[+] EMBL CD154656             [GATATCTCAATTACAAGTTACTCTTTTTGTTCTTTTATTGATTTGATATAATCTGCACATATGTTGCTAGATTATAGTTTATCACACTTAGAAATTTGTCATTTATTACATGAACCTCATTTTTACGTCTAGTTTTTTCAGTGTTATGATTTGTTTTCTGCTTTTTGATGCTTTAATCTATTCATTCAAAAGTAGTGAGTAAATTCCAACAAAATGGGGAAGTTGGGCATCCTAATTCAGATGATGAGGTACATCCAAATTCA]




>consensus_8860#1
GATATCTCAATTACAAGTTACTCTTTTTGTTCTTTTATTGATTTGATATAATCTGCACAT
ATGTTGCTAGATTATAGTTTATCACACTTAGAAATTTGTCATTTATTACATGAACCTCAT
TTTTACGTCTAGTTTTTTCAGTGTTATGATTTGTTTTCTGCTTTTTGATGCTTTAATCTA
TTCATTCAAAAGTAGTGAGTAAATTCCAACAAAATGGGGAAGTTGGGCATCCTAATTCAG
ATGATGAGGTACATCCAAATTCA

consensusID : consensus_8860#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 249
fasta sequence

                              [GTATCATCTACAAACAGATTTTTATTCGGCAAATGATGTATAACATCATGGGTTGGCTCAAGAGACAATTCATAGCTGTGGTTATATAATGCTGATGAATTTGGATGTACCTCATCATCTGAATTAGGATGCCCAACTTCCCCATTTTGTTGGAATTTACTCATGGGTGATTTGGATTCAAATGGTAAAGGAGTAGTAATATTAGATAACATCATGGGATTTTCCGGACTTCCCATTTCCCTCGGACCG]

[-] EMBL CD077830             [GTATCATCTACAAACAGATTTTTATTCGGCAAATGATGTATAACATCATGGGTTGGCTCAAGAGACAATTCATAGCTGTGGTTATATAATGCTGATGAATTTGGATGTACCTCATCATCTGAATTAGGATGCCCAACTTCCCCATTTTGTTGGAATTTACTCATGGGTGATTTGGATTCAAATGGTAAAGGAGTAGTAATATTAGATAACATCATGGGATTTTCCGGACTTCCCATTTCCCTCGGACCG]




>consensus_8860#2
GTATCATCTACAAACAGATTTTTATTCGGCAAATGATGTATAACATCATGGGTTGGCTCA
AGAGACAATTCATAGCTGTGGTTATATAATGCTGATGAATTTGGATGTACCTCATCATCT
GAATTAGGATGCCCAACTTCCCCATTTTGTTGGAATTTACTCATGGGTGATTTGGATTCA
AATGGTAAAGGAGTAGTAATATTAGATAACATCATGGGATTTTCCGGACTTCCCATTTCC
CTCGGACCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8860#0      TATATATTGATTACATGTAAGAAATAACTTTTCCGATTCGTAAAAATAATCAAATTAGAT 60
consensus_8860#2      ------------------------------------------------------------
consensus_8860#1      ------------------------------------------------------------
                                                                                  

consensus_8860#0      AAAGATTTCACATTCTAAAAAAGGAAAGTATGCAACATCAACACCTTTTTAATTATGGTA 120
consensus_8860#2      ------------------------------------------------------------
consensus_8860#1      ------------------------------------------------------------
                                                                                  

consensus_8860#0      GACACAAGGTGTAGTTGAATAAAGGAATGAAACTGATAATTTTAATATTTTTCAAAGACG 180
consensus_8860#2      ------------------------------------------------------------
consensus_8860#1      ------------------------------------------------------------
                                                                                  

consensus_8860#0      AATCACTTGCACTTCGCAATTGAATTACAGAGAGGATAAATTGTTTTGAAATTCCTAGTC 240
consensus_8860#2      ------------------------------------------------------------
consensus_8860#1      ------------------------------------------------------------
                                                                                  

consensus_8860#0      CCATTTGCACCAACAACAGTTACTACTACTTGGCTGAACTACCTGTGTGGTTTTTCGGTA 300
consensus_8860#2      ------------------------------------------------------------
consensus_8860#1      ------------------------------------------------------------
                                                                                  

consensus_8860#0      GAGGGTAATTGATGATAAGGGAAAATATTTTTCATCTTGAAAATAATAATTAACGGTTTT 360
consensus_8860#2      ------------------------------------------------------------
consensus_8860#1      ------------------------------------------------------------
                                                                                  

consensus_8860#0      TTATTCAGAAAAAATAGAGGAAACACATTACAAGAAAAACAAGTATCACTCTGATGTCAT 420
consensus_8860#2      ------------------------------------------------------------
consensus_8860#1      ------------------------------------------------------------
                                                                                  

consensus_8860#0      CCAAAAAACACAGAGATAATAACAGTATTGTTCTTGACACAAATCTCAATCAGAAAAATA 480
consensus_8860#2      ------------------------------------------------------------
consensus_8860#1      ------------------------------------------------------------
                                                                                  

consensus_8860#0      AATCAAGATATTAACAATTTGAAACGAACAAATCAAGTGTTTATAATAAAATATTACAAG 540
consensus_8860#2      ------------------------------------------------------------
consensus_8860#1      ------------------------------------------------------------
                                                                                  

consensus_8860#0      AAGAAATAGGGGAGGGAGAAACCGAACACAAATCATTGNATTCATTCTATTTATGTTTAT 600
consensus_8860#2      ------------------------------------------------------------
consensus_8860#1      ------------------------------------------------------------
                                                                                  

consensus_8860#0      ACGAGCCTGTTTGTTTGGATATATGATTGTATATTTGTTGGTGCTAAAGGCATGCTTTGT 660
consensus_8860#2      ------------------------------------------------------------
consensus_8860#1      ------------------------------------------------------------
                                                                                  

consensus_8860#0      TATTCATAATCCCATTGTTATCATAGGTATGTTGATTATTCTGAATAGAAAATTTACGAT 720
consensus_8860#2      ------------------------------------------------------------
consensus_8860#1      ------------------------------------------------------------
                                                                                  

consensus_8860#0      TTATATTCATCAATGGACGATTGCACATAACGCCATCATCTTCAGGTGGCGGTGCTGAAA 780
consensus_8860#2      ------------------------------------------------------------
consensus_8860#1      ------------------------------------------------------------
                                                                                  

consensus_8860#0      GTGATGATACCAATTCAACACATAATGAGTGTTTCCGATTATTTTTGTTGGTAGTAGTAC 840
consensus_8860#2      ------------------------------------------------------------
consensus_8860#1      ------------------------------------------------------------
                                                                                  

consensus_8860#0      TAGCATCTTCACATATCACGTGCATTGTATCATCTACAAACAGAT--TTTTATTCGGCAA 898
consensus_8860#2      --------------------------GTATCATCTACAAACAGAT--TTTTATTCGGCAA 32
consensus_8860#1      -----------------------GATATCTCAATTACAAGTTACTCTTTTTGTTCTTTTA 37
                                                 * ***  *****     *  **** ***    *

consensus_8860#0      ATGATGTATAACATCATGGGTTGGCTCAAGAGACAATTCATAGCTGTGGTTATATAATGC 958
consensus_8860#2      ATGATGTATAACATCATGGGTTGGCTCAAGAGACAATTCATAGCTGTGGTTATATAATGC 92
consensus_8860#1      TTGATTT--GATATAAT-------CTGCACATATGTTGCTAGATTATAGTT-TATCACAC 87
                       **** *   * ** **       **  * * *   * *     * * *** *** *  *

consensus_8860#0      TGATGAATTTGG-ATGTACCTCATCATCTGAATTAGGATGCCCAACTTCCCCATTTTGTT 1017
consensus_8860#2      TGATGAATTTGG-ATGTACCTCATCATCTGAATTAGGATGCCCAACTTCCCCATTTTGTT 151
consensus_8860#1      TTAGAAATTTGTCATTTATTACATGAACCTCATTTTTACGTCTAGTTTTTTCAGTGTTAT 147
                      * *  ******  ** **   *** * *   ***   * * * *  **   ** * *  *

consensus_8860#0      GGA--ATTTACTCACTATGGGTGATTTGGATTCAAATGGTAAAGGAGTAGTAA-TATTAG 1074
consensus_8860#2      GGA--ATTTACTCA---TGGGTGATTTGGATTCAAATGGTAAAGGAGTAGTAA-TATTAG 205
consensus_8860#1      GATTTGTTTTCTGCTTTTTGATGCTTTAA--TCTATTCATTCAAAAGTAGTGAGTAAATT 205
                      *     *** **     * * ** ***    ** * *  *  *  ****** * **    

consensus_8860#0      ATAACATCATGGGATTTTCCGGACTTCCCATTTCAATACTACTAATGCTACATTGACAAT 1134
consensus_8860#2      ATAACATCATGGGATTTTCCGGACTTCCCATTTCCCTCGGACCG---------------- 249
consensus_8860#1      CCAACAAAATGGGGAAGTTGGGCATCCTAATTCAGATGATGAGGTACATCCAAATTCA-- 263
                        ****  *****    *  **  * *  ***    *                       

consensus_8860#0      TAGTGGCATTACCATTGATTAGATGTAAATTTTTTAAAGATATAGTAACTTGTGCATTAT 1194
consensus_8860#2      ------------------------------------------------------------
consensus_8860#1      ------------------------------------------------------------
                                                                                  

consensus_8860#0      TTTCTAGG 1202
consensus_8860#2      --------
consensus_8860#1      --------