|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8862#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1220 fasta sequence [TATTTACTTTTTGCATTGATGCTTTTTTGGTGCATCTAATAATCTTTCATATATACTTATATATAAAAGGTATGACAACATATGAATTTATAGTTTTACAACGTCAAAAATCTAACCCATCTACTGAAAATCAAATATCTAATAATGCGGATCAAAGTAAAAAGAAAAATTTATTCTGTAGTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTCAATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCATCCACTGGGAAATCATCCGATCAACCAGTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTTCAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTACCTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTATACGACACGATAATCCGGTATATTTATCGTCCCTAGGCAAAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACACGGGTAGATAGTGATGTTTCACAAAATTTGAGTAATTATAAGACTAGTGGTGATGAGGTTTTGAGCACAAGAGCAATCACAGACGAAATTGAGTTGAATTCAATCAGTCCAAGTGATGAACTTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTACAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGTGAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCACCTGGAGACAAAATGATGTCGCATTGTGAAAACAACTTATTGACAAACCTTACTTGTAAACCCGCGTAGCAAATTAATTTTTTTCTTTTTACTGATATAATTTTGATTCTTATTGACTACCAGCAGTGATATTTTTTATTTATCGGCTAATATTTTATTATTATTTCTATTCCAATCTATCCAGTTTGACTTTGTTTAATTTCCTTCTTGTTGAAATTCTCATTTCTCGATGTGTATATTTTGTGTACAAACTACTCCGTAAATATTATCGCTAGTGAGAACAATCATTCTCTTTGTAATGCTGTTTTTATGCATGCATTAGTTAGACATTACCCTCTTCAATGTAATCAGTGTAGATATTTTTAGGAAAATGTAAATTAGAAGACTGT] [-] EMBL CD095516 [TATTTACTTTTTGCATTGATGCTTTTTTGGTGCATCTAATAATCTTTCATATATACTTATATATAAAAGGTATGACAACATATGAATTTATAGTTTTACAACGTCAAAAATCTAACCCATCTACTGAAAATCAAATATCTAATAATGCGGATCAAAGTAAAAAGAAAAATTTATTCTGTAGTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTCAATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCATCCACTGGGAAATCATCCGATCAACCAGTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTTCAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTACCTTCAATTCCAAAGTCTAATTTCATATCAGTTAGTACACGACACGGTAATC ] [-] EMBL CD095513 [TATTTACTTTTTGCATTGATGCTTTTTTGGTGCATCTAATAATCTTTCATATATACTTATATATAAAAGGTATGACAACATATGAATTTATAGTTTTACAACGTCAAAAATCTAACCCATCTACTGAAAATCAAATATCTAATAATGCGGATCAAAGTAAAAAGAAAAATTTATTCTGTAGTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTCAATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCATCCACTGGGAAATCATCCGATCAACCAGTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTTCAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTACCTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTATACGACACGATta ] [+] EMBL CD165861 [ gcCAATCAAATGGGCCATATACTACAAGTAGTAAAGTCGTTTTGTCTTTACCATCCACTGGGAAATCATCCGATCAACCAGTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTTCAGTTGGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTACCTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTATACAACAAGATAATCCGGTATATTTATCGTCCCTAGGCAAAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACACGGGTAGATAGTGATGTTTCACAAAATTTGAGTAAT ] [+] EMBL CD192624 [ AAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACACGGGTAGATAGTGATGTTTCACAAAATTTGAGTAATTATAAGACTAGTGGTGATGAGGTTTTGAGCACAAGAGCAATCACAGACGAAATTGAGTTGAATTCAATCAGTCCAAGTGATGAACTTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTACAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGTGAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCACCTG ] [-] EMBL CD074749 [ ATAAGACTAGTGGTGATGAGATTTTGAGCACAAGAGCAATCACAGACGAAATTGAGTTGAATTCAATCAGTCCAAGTGATGAACTTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTACAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGTGAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCACCTGGAGACAAAATGATGTCGCATTGTGAAAACAACTTATTGACAAACCTTACTTGTAAACCCGCGTAGCAAATTAATTTTTTTCTTTTTACTGATATAATTTTGATTCTTATTGACTACCAGCAGTGATATTTTTTATTTATCGGCTAATATTTTATTATTATTTCTATTCCAATCTATCCAGTTTGACTTTGTTTAATTTCCTTCTTGTTGAAATTCTCATTTCTCGATGTGTATATTTTGTGTACAAACTACTCCGTAAATATTATCGCTAGTGAGAACAATCATTCTCTTTGTAATGCTGTTTTTATGCATGCATTAGTTAGACATTACCCTCTTCAATGTAATCAGTGTAGATATTTTTAGGAAAATGTAAATTAGAAGACTGT] [+] EMBL CD191408 [ TGAGTTGAATTCAATCAGTCCAAGTGATGAACTTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTACAAATTCACTTGCAAAAGATGATGA ] consensusID : consensus_8862#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [ACAAGAAAAATTTATTCTGTAGTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTCAATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCATTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTTCAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTACCTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNTATCGTCCCTAGGCAAAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACACGGGTAGATAGTGATGTTTCACAAAATTTGAGTAATTATAAGACTAGTGGTGATGAGATTTTGAGCACAAGAGCAATCACAGACGAGAACTTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTACAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGTGAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCTGACAACCTTACTTTGTAACCGCGTAGCAAA] [+] EMBL CD080917 [ACAAGAAAAATTTATTCTGTAGTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTCAATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCATTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTTCAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTACCTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNTATCGTCCCTAGGCAAAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACACGGGTAGATAGTGATGTTTCACAAAATTTGAGTAATTATAAGACTAGTGGTGATGAGATTTTGAGCACAAGAGCAATCACAGACGAGAACTTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTACAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGTGAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCTGACAACCTTACTTTGTAACCGCGTAGCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8862#0 TATTTACTTTTTGCATTGATGCTTTTTTGGTGCATCTAATAATCTTTCATATATACTTAT 60
consensus_8862#1 ------------------------------------------------------------
consensus_8862#0 ATATAAAAGGTATGACAACATATGAATTTATAGTTTTACAACGTCAAAAATCTAACCCAT 120
consensus_8862#1 ------------------------------------------------------------
consensus_8862#0 CTACTGAAAATCAAATATCTAATAATGCGGATCAAAGTAAAAAGAAAAATTTATTCTGTA 180
consensus_8862#1 ---------------------------------------ACAAGAAAAATTTATTCTGTA 21
* *******************
consensus_8862#0 GTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTC 240
consensus_8862#1 GTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTC 81
************************************************************
consensus_8862#0 AATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCATCCACTGGGA 300
consensus_8862#1 AATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCAT--------- 132
***************************************************
consensus_8862#0 AATCATCCGATCAACCAGTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTT 360
consensus_8862#1 ------------------TTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTT 174
******************************************
consensus_8862#0 CAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTAC 420
consensus_8862#1 CAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTAC 234
************************************************************
consensus_8862#0 CTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTATACGACACGATAATCCGGTATATT 480
consensus_8862#1 CTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTNNNNNNNNNNNNNNNNNNNNNNNNN 294
***********************************
consensus_8862#0 TATCGTCCCTAGGCAAAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACAC 540
consensus_8862#1 TATCGTCCCTAGGCAAAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACAC 354
************************************************************
consensus_8862#0 GGGTAGATAGTGATGTTTCACAAAATTTGAGTAATTATAAGACTAGTGGTGATGAGGTTT 600
consensus_8862#1 GGGTAGATAGTGATGTTTCACAAAATTTGAGTAATTATAAGACTAGTGGTGATGAGATTT 414
******************************************************** ***
consensus_8862#0 TGAGCACAAGAGCAATCACAGACGAAATTGAGTTGAATTCAATCAGTCCAAGTGATGAAC 660
consensus_8862#1 TGAGCACAAGAGCAATCACAGACGA-------------------------------GAAC 443
************************* ****
consensus_8862#0 TTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTA 720
consensus_8862#1 TTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTA 503
************************************************************
consensus_8862#0 CAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGT 780
consensus_8862#1 CAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGT 563
************************************************************
consensus_8862#0 GAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCACCTGGAGAC 840
consensus_8862#1 GAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCTGACAACCTT 623
**************************************************
consensus_8862#0 AAAATGATGTCGCATTGTGAAAACAACTTATTGACAAACCTTACTTGTAAACCCGCGTAG 900
consensus_8862#1 ACTTTGTAACCGCGTAGCAAA--------------------------------------- 644
* ** *** * * **
consensus_8862#0 CAAATTAATTTTTTTCTTTTTACTGATATAATTTTGATTCTTATTGACTACCAGCAGTGA 960
consensus_8862#1 ------------------------------------------------------------
consensus_8862#0 TATTTTTTATTTATCGGCTAATATTTTATTATTATTTCTATTCCAATCTATCCAGTTTGA 1020
consensus_8862#1 ------------------------------------------------------------
consensus_8862#0 CTTTGTTTAATTTCCTTCTTGTTGAAATTCTCATTTCTCGATGTGTATATTTTGTGTACA 1080
consensus_8862#1 ------------------------------------------------------------
consensus_8862#0 AACTACTCCGTAAATATTATCGCTAGTGAGAACAATCATTCTCTTTGTAATGCTGTTTTT 1140
consensus_8862#1 ------------------------------------------------------------
consensus_8862#0 ATGCATGCATTAGTTAGACATTACCCTCTTCAATGTAATCAGTGTAGATATTTTTAGGAA 1200
consensus_8862#1 ------------------------------------------------------------
consensus_8862#0 AATGTAAATTAGAAGACTGT 1220
consensus_8862#1 --------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||