These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8862#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1220 fasta sequence [TATTTACTTTTTGCATTGATGCTTTTTTGGTGCATCTAATAATCTTTCATATATACTTATATATAAAAGGTATGACAACATATGAATTTATAGTTTTACAACGTCAAAAATCTAACCCATCTACTGAAAATCAAATATCTAATAATGCGGATCAAAGTAAAAAGAAAAATTTATTCTGTAGTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTCAATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCATCCACTGGGAAATCATCCGATCAACCAGTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTTCAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTACCTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTATACGACACGATAATCCGGTATATTTATCGTCCCTAGGCAAAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACACGGGTAGATAGTGATGTTTCACAAAATTTGAGTAATTATAAGACTAGTGGTGATGAGGTTTTGAGCACAAGAGCAATCACAGACGAAATTGAGTTGAATTCAATCAGTCCAAGTGATGAACTTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTACAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGTGAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCACCTGGAGACAAAATGATGTCGCATTGTGAAAACAACTTATTGACAAACCTTACTTGTAAACCCGCGTAGCAAATTAATTTTTTTCTTTTTACTGATATAATTTTGATTCTTATTGACTACCAGCAGTGATATTTTTTATTTATCGGCTAATATTTTATTATTATTTCTATTCCAATCTATCCAGTTTGACTTTGTTTAATTTCCTTCTTGTTGAAATTCTCATTTCTCGATGTGTATATTTTGTGTACAAACTACTCCGTAAATATTATCGCTAGTGAGAACAATCATTCTCTTTGTAATGCTGTTTTTATGCATGCATTAGTTAGACATTACCCTCTTCAATGTAATCAGTGTAGATATTTTTAGGAAAATGTAAATTAGAAGACTGT] [-] EMBL CD095516 [TATTTACTTTTTGCATTGATGCTTTTTTGGTGCATCTAATAATCTTTCATATATACTTATATATAAAAGGTATGACAACATATGAATTTATAGTTTTACAACGTCAAAAATCTAACCCATCTACTGAAAATCAAATATCTAATAATGCGGATCAAAGTAAAAAGAAAAATTTATTCTGTAGTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTCAATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCATCCACTGGGAAATCATCCGATCAACCAGTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTTCAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTACCTTCAATTCCAAAGTCTAATTTCATATCAGTTAGTACACGACACGGTAATC ] [-] EMBL CD095513 [TATTTACTTTTTGCATTGATGCTTTTTTGGTGCATCTAATAATCTTTCATATATACTTATATATAAAAGGTATGACAACATATGAATTTATAGTTTTACAACGTCAAAAATCTAACCCATCTACTGAAAATCAAATATCTAATAATGCGGATCAAAGTAAAAAGAAAAATTTATTCTGTAGTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTCAATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCATCCACTGGGAAATCATCCGATCAACCAGTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTTCAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTACCTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTATACGACACGATta ] [+] EMBL CD165861 [ gcCAATCAAATGGGCCATATACTACAAGTAGTAAAGTCGTTTTGTCTTTACCATCCACTGGGAAATCATCCGATCAACCAGTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTTCAGTTGGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTACCTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTATACAACAAGATAATCCGGTATATTTATCGTCCCTAGGCAAAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACACGGGTAGATAGTGATGTTTCACAAAATTTGAGTAAT ] [+] EMBL CD192624 [ AAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACACGGGTAGATAGTGATGTTTCACAAAATTTGAGTAATTATAAGACTAGTGGTGATGAGGTTTTGAGCACAAGAGCAATCACAGACGAAATTGAGTTGAATTCAATCAGTCCAAGTGATGAACTTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTACAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGTGAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCACCTG ] [-] EMBL CD074749 [ ATAAGACTAGTGGTGATGAGATTTTGAGCACAAGAGCAATCACAGACGAAATTGAGTTGAATTCAATCAGTCCAAGTGATGAACTTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTACAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGTGAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCACCTGGAGACAAAATGATGTCGCATTGTGAAAACAACTTATTGACAAACCTTACTTGTAAACCCGCGTAGCAAATTAATTTTTTTCTTTTTACTGATATAATTTTGATTCTTATTGACTACCAGCAGTGATATTTTTTATTTATCGGCTAATATTTTATTATTATTTCTATTCCAATCTATCCAGTTTGACTTTGTTTAATTTCCTTCTTGTTGAAATTCTCATTTCTCGATGTGTATATTTTGTGTACAAACTACTCCGTAAATATTATCGCTAGTGAGAACAATCATTCTCTTTGTAATGCTGTTTTTATGCATGCATTAGTTAGACATTACCCTCTTCAATGTAATCAGTGTAGATATTTTTAGGAAAATGTAAATTAGAAGACTGT] [+] EMBL CD191408 [ TGAGTTGAATTCAATCAGTCCAAGTGATGAACTTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTACAAATTCACTTGCAAAAGATGATGA ] consensusID : consensus_8862#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [ACAAGAAAAATTTATTCTGTAGTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTCAATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCATTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTTCAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTACCTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNTATCGTCCCTAGGCAAAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACACGGGTAGATAGTGATGTTTCACAAAATTTGAGTAATTATAAGACTAGTGGTGATGAGATTTTGAGCACAAGAGCAATCACAGACGAGAACTTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTACAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGTGAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCTGACAACCTTACTTTGTAACCGCGTAGCAAA] [+] EMBL CD080917 [ACAAGAAAAATTTATTCTGTAGTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTCAATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCATTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTTCAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTACCTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNTATCGTCCCTAGGCAAAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACACGGGTAGATAGTGATGTTTCACAAAATTTGAGTAATTATAAGACTAGTGGTGATGAGATTTTGAGCACAAGAGCAATCACAGACGAGAACTTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTACAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGTGAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCTGACAACCTTACTTTGTAACCGCGTAGCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8862#0 TATTTACTTTTTGCATTGATGCTTTTTTGGTGCATCTAATAATCTTTCATATATACTTAT 60 consensus_8862#1 ------------------------------------------------------------ consensus_8862#0 ATATAAAAGGTATGACAACATATGAATTTATAGTTTTACAACGTCAAAAATCTAACCCAT 120 consensus_8862#1 ------------------------------------------------------------ consensus_8862#0 CTACTGAAAATCAAATATCTAATAATGCGGATCAAAGTAAAAAGAAAAATTTATTCTGTA 180 consensus_8862#1 ---------------------------------------ACAAGAAAAATTTATTCTGTA 21 * ******************* consensus_8862#0 GTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTC 240 consensus_8862#1 GTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTC 81 ************************************************************ consensus_8862#0 AATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCATCCACTGGGA 300 consensus_8862#1 AATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCAT--------- 132 *************************************************** consensus_8862#0 AATCATCCGATCAACCAGTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTT 360 consensus_8862#1 ------------------TTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTT 174 ****************************************** consensus_8862#0 CAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTAC 420 consensus_8862#1 CAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTAC 234 ************************************************************ consensus_8862#0 CTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTATACGACACGATAATCCGGTATATT 480 consensus_8862#1 CTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTNNNNNNNNNNNNNNNNNNNNNNNNN 294 *********************************** consensus_8862#0 TATCGTCCCTAGGCAAAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACAC 540 consensus_8862#1 TATCGTCCCTAGGCAAAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACAC 354 ************************************************************ consensus_8862#0 GGGTAGATAGTGATGTTTCACAAAATTTGAGTAATTATAAGACTAGTGGTGATGAGGTTT 600 consensus_8862#1 GGGTAGATAGTGATGTTTCACAAAATTTGAGTAATTATAAGACTAGTGGTGATGAGATTT 414 ******************************************************** *** consensus_8862#0 TGAGCACAAGAGCAATCACAGACGAAATTGAGTTGAATTCAATCAGTCCAAGTGATGAAC 660 consensus_8862#1 TGAGCACAAGAGCAATCACAGACGA-------------------------------GAAC 443 ************************* **** consensus_8862#0 TTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTA 720 consensus_8862#1 TTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTA 503 ************************************************************ consensus_8862#0 CAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGT 780 consensus_8862#1 CAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGT 563 ************************************************************ consensus_8862#0 GAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCACCTGGAGAC 840 consensus_8862#1 GAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCTGACAACCTT 623 ************************************************** consensus_8862#0 AAAATGATGTCGCATTGTGAAAACAACTTATTGACAAACCTTACTTGTAAACCCGCGTAG 900 consensus_8862#1 ACTTTGTAACCGCGTAGCAAA--------------------------------------- 644 * ** *** * * ** consensus_8862#0 CAAATTAATTTTTTTCTTTTTACTGATATAATTTTGATTCTTATTGACTACCAGCAGTGA 960 consensus_8862#1 ------------------------------------------------------------ consensus_8862#0 TATTTTTTATTTATCGGCTAATATTTTATTATTATTTCTATTCCAATCTATCCAGTTTGA 1020 consensus_8862#1 ------------------------------------------------------------ consensus_8862#0 CTTTGTTTAATTTCCTTCTTGTTGAAATTCTCATTTCTCGATGTGTATATTTTGTGTACA 1080 consensus_8862#1 ------------------------------------------------------------ consensus_8862#0 AACTACTCCGTAAATATTATCGCTAGTGAGAACAATCATTCTCTTTGTAATGCTGTTTTT 1140 consensus_8862#1 ------------------------------------------------------------ consensus_8862#0 ATGCATGCATTAGTTAGACATTACCCTCTTCAATGTAATCAGTGTAGATATTTTTAGGAA 1200 consensus_8862#1 ------------------------------------------------------------ consensus_8862#0 AATGTAAATTAGAAGACTGT 1220 consensus_8862#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||