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Schistosoma mansoni
cluster # 8862 cluster # 8862       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8862#0 length = 1220 sequences # 6  
consensus_8862#1 length = 644 sequences # 1  

consensusID : consensus_8862#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1220
fasta sequence
                              [TATTTACTTTTTGCATTGATGCTTTTTTGGTGCATCTAATAATCTTTCATATATACTTATATATAAAAGGTATGACAACATATGAATTTATAGTTTTACAACGTCAAAAATCTAACCCATCTACTGAAAATCAAATATCTAATAATGCGGATCAAAGTAAAAAGAAAAATTTATTCTGTAGTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTCAATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCATCCACTGGGAAATCATCCGATCAACCAGTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTTCAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTACCTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTATACGACACGATAATCCGGTATATTTATCGTCCCTAGGCAAAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACACGGGTAGATAGTGATGTTTCACAAAATTTGAGTAATTATAAGACTAGTGGTGATGAGGTTTTGAGCACAAGAGCAATCACAGACGAAATTGAGTTGAATTCAATCAGTCCAAGTGATGAACTTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTACAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGTGAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCACCTGGAGACAAAATGATGTCGCATTGTGAAAACAACTTATTGACAAACCTTACTTGTAAACCCGCGTAGCAAATTAATTTTTTTCTTTTTACTGATATAATTTTGATTCTTATTGACTACCAGCAGTGATATTTTTTATTTATCGGCTAATATTTTATTATTATTTCTATTCCAATCTATCCAGTTTGACTTTGTTTAATTTCCTTCTTGTTGAAATTCTCATTTCTCGATGTGTATATTTTGTGTACAAACTACTCCGTAAATATTATCGCTAGTGAGAACAATCATTCTCTTTGTAATGCTGTTTTTATGCATGCATTAGTTAGACATTACCCTCTTCAATGTAATCAGTGTAGATATTTTTAGGAAAATGTAAATTAGAAGACTGT]

[-] EMBL CD095516             [TATTTACTTTTTGCATTGATGCTTTTTTGGTGCATCTAATAATCTTTCATATATACTTATATATAAAAGGTATGACAACATATGAATTTATAGTTTTACAACGTCAAAAATCTAACCCATCTACTGAAAATCAAATATCTAATAATGCGGATCAAAGTAAAAAGAAAAATTTATTCTGTAGTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTCAATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCATCCACTGGGAAATCATCCGATCAACCAGTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTTCAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTACCTTCAATTCCAAAGTCTAATTTCATATCAGTTAGTACACGACACGGTAATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD095513             [TATTTACTTTTTGCATTGATGCTTTTTTGGTGCATCTAATAATCTTTCATATATACTTATATATAAAAGGTATGACAACATATGAATTTATAGTTTTACAACGTCAAAAATCTAACCCATCTACTGAAAATCAAATATCTAATAATGCGGATCAAAGTAAAAAGAAAAATTTATTCTGTAGTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTCAATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCATCCACTGGGAAATCATCCGATCAACCAGTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTTCAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTACCTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTATACGACACGATta                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD165861             [                                                                                                                                                                                                                                             gcCAATCAAATGGGCCATATACTACAAGTAGTAAAGTCGTTTTGTCTTTACCATCCACTGGGAAATCATCCGATCAACCAGTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTTCAGTTGGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTACCTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTATACAACAAGATAATCCGGTATATTTATCGTCCCTAGGCAAAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACACGGGTAGATAGTGATGTTTCACAAAATTTGAGTAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD192624             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACACGGGTAGATAGTGATGTTTCACAAAATTTGAGTAATTATAAGACTAGTGGTGATGAGGTTTTGAGCACAAGAGCAATCACAGACGAAATTGAGTTGAATTCAATCAGTCCAAGTGATGAACTTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTACAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGTGAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCACCTG                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD074749             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ATAAGACTAGTGGTGATGAGATTTTGAGCACAAGAGCAATCACAGACGAAATTGAGTTGAATTCAATCAGTCCAAGTGATGAACTTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTACAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGTGAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCACCTGGAGACAAAATGATGTCGCATTGTGAAAACAACTTATTGACAAACCTTACTTGTAAACCCGCGTAGCAAATTAATTTTTTTCTTTTTACTGATATAATTTTGATTCTTATTGACTACCAGCAGTGATATTTTTTATTTATCGGCTAATATTTTATTATTATTTCTATTCCAATCTATCCAGTTTGACTTTGTTTAATTTCCTTCTTGTTGAAATTCTCATTTCTCGATGTGTATATTTTGTGTACAAACTACTCCGTAAATATTATCGCTAGTGAGAACAATCATTCTCTTTGTAATGCTGTTTTTATGCATGCATTAGTTAGACATTACCCTCTTCAATGTAATCAGTGTAGATATTTTTAGGAAAATGTAAATTAGAAGACTGT]
[+] EMBL CD191408             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGAGTTGAATTCAATCAGTCCAAGTGATGAACTTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTACAAATTCACTTGCAAAAGATGATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]


>consensus_8862#0 TATTTACTTTTTGCATTGATGCTTTTTTGGTGCATCTAATAATCTTTCATATATACTTAT ATATAAAAGGTATGACAACATATGAATTTATAGTTTTACAACGTCAAAAATCTAACCCAT CTACTGAAAATCAAATATCTAATAATGCGGATCAAAGTAAAAAGAAAAATTTATTCTGTA GTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTC AATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCATCCACTGGGA AATCATCCGATCAACCAGTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTT CAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTAC CTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTATACGACACGATAATCCGGTATATT TATCGTCCCTAGGCAAAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACAC GGGTAGATAGTGATGTTTCACAAAATTTGAGTAATTATAAGACTAGTGGTGATGAGGTTT TGAGCACAAGAGCAATCACAGACGAAATTGAGTTGAATTCAATCAGTCCAAGTGATGAAC TTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTA CAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGT GAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCACCTGGAGAC AAAATGATGTCGCATTGTGAAAACAACTTATTGACAAACCTTACTTGTAAACCCGCGTAG CAAATTAATTTTTTTCTTTTTACTGATATAATTTTGATTCTTATTGACTACCAGCAGTGA TATTTTTTATTTATCGGCTAATATTTTATTATTATTTCTATTCCAATCTATCCAGTTTGA CTTTGTTTAATTTCCTTCTTGTTGAAATTCTCATTTCTCGATGTGTATATTTTGTGTACA AACTACTCCGTAAATATTATCGCTAGTGAGAACAATCATTCTCTTTGTAATGCTGTTTTT ATGCATGCATTAGTTAGACATTACCCTCTTCAATGTAATCAGTGTAGATATTTTTAGGAA AATGTAAATTAGAAGACTGT



consensusID : consensus_8862#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence
                              [ACAAGAAAAATTTATTCTGTAGTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTCAATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCATTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTTCAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTACCTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNTATCGTCCCTAGGCAAAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACACGGGTAGATAGTGATGTTTCACAAAATTTGAGTAATTATAAGACTAGTGGTGATGAGATTTTGAGCACAAGAGCAATCACAGACGAGAACTTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTACAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGTGAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCTGACAACCTTACTTTGTAACCGCGTAGCAAA]

[+] EMBL CD080917             [ACAAGAAAAATTTATTCTGTAGTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTCAATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCATTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTTCAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTACCTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNTATCGTCCCTAGGCAAAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACACGGGTAGATAGTGATGTTTCACAAAATTTGAGTAATTATAAGACTAGTGGTGATGAGATTTTGAGCACAAGAGCAATCACAGACGAGAACTTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTACAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGTGAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCTGACAACCTTACTTTGTAACCGCGTAGCAAA]


>consensus_8862#1 ACAAGAAAAATTTATTCTGTAGTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTG CTGAAATGTCATCACAGAGTCAATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTT TGTCTTTACCATTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTTCAGTTA GACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTACCTTCAA TTCCAAAGTCTAATTTCATATCAGAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNTATCGT CCCTAGGCAAAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACACGGGTAG ATAGTGATGTTTCACAAAATTTGAGTAATTATAAGACTAGTGGTGATGAGATTTTGAGCA CAAGAGCAATCACAGACGAGAACTTGTTTCATCTGAACAAATCATCAGATCTACGATTAC ACAATCCAATAGTACAGAATCTACAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGAT ACCTAAGGTACCTCCAGTATTGTGAAAAACATAGTGTTATACGTATATATAAGCCTATGT TATCTACCACTTCTGACAACCTTACTTTGTAACCGCGTAGCAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8862#0      TATTTACTTTTTGCATTGATGCTTTTTTGGTGCATCTAATAATCTTTCATATATACTTAT 60
consensus_8862#1      ------------------------------------------------------------
                                                                                  

consensus_8862#0      ATATAAAAGGTATGACAACATATGAATTTATAGTTTTACAACGTCAAAAATCTAACCCAT 120
consensus_8862#1      ------------------------------------------------------------
                                                                                  

consensus_8862#0      CTACTGAAAATCAAATATCTAATAATGCGGATCAAAGTAAAAAGAAAAATTTATTCTGTA 180
consensus_8862#1      ---------------------------------------ACAAGAAAAATTTATTCTGTA 21
                                                             * *******************

consensus_8862#0      GTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTC 240
consensus_8862#1      GTATTAATTGCATCGATTTATGTGAAAAAGAAGATATTGCTGAAATGTCATCACAGAGTC 81
                      ************************************************************

consensus_8862#0      AATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCATCCACTGGGA 300
consensus_8862#1      AATCAAATGGGCCATATACTACAAGTAGTAAAGTTGTTTTGTCTTTACCAT--------- 132
                      ***************************************************         

consensus_8862#0      AATCATCCGATCAACCAGTTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTT 360
consensus_8862#1      ------------------TTGTAACAGGTGATTTAGCCAATCATAGCAGTAGTATTTGTT 174
                                        ******************************************

consensus_8862#0      CAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTAC 420
consensus_8862#1      CAGTTAGACCACAAACTATTTCTAATAATAAAATATTTTCTGGTGGAAAAGAATGTCTAC 234
                      ************************************************************

consensus_8862#0      CTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTATACGACACGATAATCCGGTATATT 480
consensus_8862#1      CTTCAATTCCAAAGTCTAATTTCATATCAGAAAGTNNNNNNNNNNNNNNNNNNNNNNNNN 294
                      ***********************************                         

consensus_8862#0      TATCGTCCCTAGGCAAAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACAC 540
consensus_8862#1      TATCGTCCCTAGGCAAAAATTCTGATACACCTCTCGATGTAAATAAACATGATCTAACAC 354
                      ************************************************************

consensus_8862#0      GGGTAGATAGTGATGTTTCACAAAATTTGAGTAATTATAAGACTAGTGGTGATGAGGTTT 600
consensus_8862#1      GGGTAGATAGTGATGTTTCACAAAATTTGAGTAATTATAAGACTAGTGGTGATGAGATTT 414
                      ******************************************************** ***

consensus_8862#0      TGAGCACAAGAGCAATCACAGACGAAATTGAGTTGAATTCAATCAGTCCAAGTGATGAAC 660
consensus_8862#1      TGAGCACAAGAGCAATCACAGACGA-------------------------------GAAC 443
                      *************************                               ****

consensus_8862#0      TTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTA 720
consensus_8862#1      TTGTTTCATCTGAACAAATCATCAGATCTACGATTACACAATCCAATAGTACAGAATCTA 503
                      ************************************************************

consensus_8862#0      CAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGT 780
consensus_8862#1      CAAATTCACTTGCAAAAGATGATGAGAGTTCAGTGATACCTAAGGTACCTCCAGTATTGT 563
                      ************************************************************

consensus_8862#0      GAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCACCTGGAGAC 840
consensus_8862#1      GAAAAACATAGTGTTATACGTATATATAAGCCTATGTTATCTACCACTTCTGACAACCTT 623
                      **************************************************          

consensus_8862#0      AAAATGATGTCGCATTGTGAAAACAACTTATTGACAAACCTTACTTGTAAACCCGCGTAG 900
consensus_8862#1      ACTTTGTAACCGCGTAGCAAA--------------------------------------- 644
                      *   **    *** * *  **                                       

consensus_8862#0      CAAATTAATTTTTTTCTTTTTACTGATATAATTTTGATTCTTATTGACTACCAGCAGTGA 960
consensus_8862#1      ------------------------------------------------------------
                                                                                  

consensus_8862#0      TATTTTTTATTTATCGGCTAATATTTTATTATTATTTCTATTCCAATCTATCCAGTTTGA 1020
consensus_8862#1      ------------------------------------------------------------
                                                                                  

consensus_8862#0      CTTTGTTTAATTTCCTTCTTGTTGAAATTCTCATTTCTCGATGTGTATATTTTGTGTACA 1080
consensus_8862#1      ------------------------------------------------------------
                                                                                  

consensus_8862#0      AACTACTCCGTAAATATTATCGCTAGTGAGAACAATCATTCTCTTTGTAATGCTGTTTTT 1140
consensus_8862#1      ------------------------------------------------------------
                                                                                  

consensus_8862#0      ATGCATGCATTAGTTAGACATTACCCTCTTCAATGTAATCAGTGTAGATATTTTTAGGAA 1200
consensus_8862#1      ------------------------------------------------------------
                                                                                  

consensus_8862#0      AATGTAAATTAGAAGACTGT 1220
consensus_8862#1      --------------------
                                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)