cluster # 8864

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Schistosoma mansoni
cluster # 8864 cluster # 8864 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8864#0 length = 769 sequences # 6

consensus_8864#1 length = 460 sequences # 1

consensusID : consensus_8864#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 769
fasta sequence

                              [CCCTCGAGCCAANAATTCGGCACGAGGACAGAATCTCTTTACTTGATGCGTATGTTCCGTGCTCAACGTAATTTTTATATCACTGGATTTTCATTATTCGTGTGGTTTGTACTACATCGTCTTGTCAGTTTACTTTCGGAACATGCCAAAATGTCAGCTTCCGAAGAGGCGAGTATTAAACAAGCTCAAAGTGCAACAGCAGCAGCACAACGTTTGTTAGATCAATCAAAAGTCACTGATAGTGATACGGAAGATATATATCCTGATACTGTAGAAGCATTGAAAGATGAATTGGCGAAATTAACTAGGAAATTTGAATCTGAAGAAAAAGCTCATCAAAGAACTAAACAAGATTTAGAAACTTTAAAGAAACAAACTCTTCAAACTAATACTGAATACGATCGTGTCACACAAGAATGCCAAAAACTACAATATCGTCTTCAGATGTTAGAAAGTGGTGGTTCAACAAACAAGAAGGCTGATTAGATCTGTGATCACACACACACACACACACACTTTCTCTCTCTCAACATATAAAAAACAATATTTTGACAC-TAATCATTGTTGATCCTTATCCGGTATCAATGAAACAAGAATTTACATCGTTCTATGTGTTTATTTTTGCATGTTATACCTTTCAGATATTCAACGTATCTATTGCTTATGGTTTTGAAAACAGTTCGCTTTTGTAACTTCTTTTTCTCTCTCAACACATGAGTTTATTGCTCTATATATAGATGTAGATGTAATAATGTTGAAATGAATTTAT]

[+] EMBL CD081925             [CCCTCGAGCCAANAATTCGGCACGAGGACAGAATCTCTTTACTTGATGCGTATGTTCCGTGCTCAACGTAATTTTTATATCACTGGATTTTCATTATTCGTGTGGTTTGTACTACATCGTCTTGTCAGTTTACTTTCGGAACATGCCAAAATGTCAGCTTCCGAAGAGGCGAGTATTAAACAAGCTCAAAGTGCAACAGCAGCAGCACAACGTTTGTTAGATCAATCAAAAGTCACTGATAGTGATACGGAAGATATATATCCTGATACTGTAGAAGCATTGAAAGATGAATTGGCGAAATTAACTAGGAAATTTGAATCTGAAGAAAAAGCTCATCAAAGAACTAAACAAGATTTAGAAACTTTAAAGAAACAAACTCTTCAAACTAATACTGAATACGATCGTGTCACACAAGAATGCCAAAAACTACAATATCGTCTTCAGATGTTAGAAAGTGGTGGTTCAACAAACAAGAAGGCTGATTAGATCTGTGATCACACACACACACACACACACTTTCTCTCTCTCAACATATAAAAAACAATATTTTGACAC TAATCATTGTTGATCCTTATCCGGTATCAATGAAACAAGAATTTACATCATTCTATGTGTTTATTTTTGCATGTTATACCTTTCAGATATTCAACGTATCTATTGCTTATGGTTNTGAAAACAGTTCGCTTTTGTAACTTCTTTTTCTCTCTC ACACATGAGTTTATTGCTCT TATATAGATGTAGATGTAATAATGGTGAAATGAAT    ]
[-] EMBL CD068603             [                                                                                                                                                                                                                                                                                                                                                                ATTTAGAGACTTGAGAAAGACAAACTCTTCAAACTAATACTGAATACGATCGTGTCACACAAGAATGCCAAAAACTACAATATCGTCTTCAGATGTTAGAAAGTGGTGGTTCAACAAACAAGAAGGCTGATTAGATCTGTGAT  CACACACACACACACACACTTTCTCTCTCTCAACATATAAAAAACAATATTTTGACACGCACTCGGTGTTGACCGTCAT                                                                                                                                                                                                  ]
[-] EMBL AI067344             [                                                                                                                                                                                                                                                                                                                                                                                              AAACTAATACTGAATACGATCGTGTCACACAAGAATGCCAAAAACTACAATATCGTCTTCAGATGTTAGAAAGTGGTGGTTCAACAAACAAGAAGGCTGATTAGATCTGTGATCACACACACACACACACACACTTTCTCTCTCTCAACATATAAAAAACAATATTTTGACAC TAATCATTGTTGATCCTTATCCGGTATCAATGAAACAAGAATTTACATCGTTCTATGTGTTTATTTTTGCATGTTATACCTTTCAGATATTCAACGTATCTATTGCTTATGGTTTTGAAAACAGTTCGCTTTTGTAACTTCTTTTTCTCTCTCAACACATGAGTTTATTGCTCTATATATAGATGTAGATGTAATAATGTTGAAATGAATTTAT]
[-] EMBL AI067286             [                                                                                                                                                                                                                                                                                                                                                                                                      ACTGAATACGATCGTGTCACACAAGAATGCCAAAAACTACAATATCGTCTTCAGATGTTAGAAAGTGGTGGTTCAACAAACAAGAAGGCTGATTAGATCTGTGATCACACACACACACACACACACTTTCTCTCTCTCAACATATAAAAAACAATATTTTGACAC TAATCATTGTTGATCCTTATCCGGTATCAATGAAACAAGAATTTACATCGTTCTATGTGTTTATTTTTGCATGTTATACCTTTCAGATATTCAACGTATCTATTGCTTATGGTTTTGAAAACAGTTCGCTTTTGTAACTTCTTTTTCTCTCTCAACACATGAGTTTATTGCTCTATATATAGATGTAGATGTAATAATGTTGAAATGAATTTAT]
[-] EMBL AI068335             [                                                                                                                                                                                                                                                                                                                                                                                                                           CAAGAATCCCAAAAACTACAATATCGTCTTCAGATGTTAGAAAGTGGTGGTTCAACAAACAAGAAGGCTGATTAGATCTGTGATCACACACACACACACACACACTTTCTCTCTCTCAACATATAAAAAACAATATTTTGACAC TAATCATTGTTGATCCTTATCCGGTATCAATGAAACAAGAATTTACATCGTTCTATGTGTTTATTTTTGCATGTTATACCTTTCAGATATTCAACGTATCTATTGCTTATGGTTTTGAAAACAGTTCGCTTTTGTAACTTCTTTTTCTCTCTCAACACATGAGTTTATTGCTCTATATATAGATGTAGATGTAATAATGTTGAAATGAATTTAT]
[-] EMBL CD141405             [                                                                                                                                                                                                                                                                                                                                                                                                                                    CAAAANCTACAATATCGTCTTCAGATGTTAGAAAGTGGTGGTTCATCAAACAAGAAGGCTGATTAGATCTGTGATCACACACACACACACACACACTTTCTCTCTCTCAACATATAAAAAACAATATTTTGACAC TAATCATTGTTGATCCTTATCCGGTATCAATGAAACAAGAATTTACATCATTCTATGTGTTTATTTTTGCATGTTATACCTTTCAGATATTCAACGTATCTATTGCTTATGGTTTTGAAAACAGTTCGCTTTTGTA                                                                              ]




>consensus_8864#0
CCCTCGAGCCAANAATTCGGCACGAGGACAGAATCTCTTTACTTGATGCGTATGTTCCGT
GCTCAACGTAATTTTTATATCACTGGATTTTCATTATTCGTGTGGTTTGTACTACATCGT
CTTGTCAGTTTACTTTCGGAACATGCCAAAATGTCAGCTTCCGAAGAGGCGAGTATTAAA
CAAGCTCAAAGTGCAACAGCAGCAGCACAACGTTTGTTAGATCAATCAAAAGTCACTGAT
AGTGATACGGAAGATATATATCCTGATACTGTAGAAGCATTGAAAGATGAATTGGCGAAA
TTAACTAGGAAATTTGAATCTGAAGAAAAAGCTCATCAAAGAACTAAACAAGATTTAGAA
ACTTTAAAGAAACAAACTCTTCAAACTAATACTGAATACGATCGTGTCACACAAGAATGC
CAAAAACTACAATATCGTCTTCAGATGTTAGAAAGTGGTGGTTCAACAAACAAGAAGGCT
GATTAGATCTGTGATCACACACACACACACACACACTTTCTCTCTCTCAACATATAAAAA
ACAATATTTTGACACTAATCATTGTTGATCCTTATCCGGTATCAATGAAACAAGAATTTA
CATCGTTCTATGTGTTTATTTTTGCATGTTATACCTTTCAGATATTCAACGTATCTATTG
CTTATGGTTTTGAAAACAGTTCGCTTTTGTAACTTCTTTTTCTCTCTCAACACATGAGTT
TATTGCTCTATATATAGATGTAGATGTAATAATGTTGAAATGAATTTAT

consensusID : consensus_8864#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 460
fasta sequence

                              [ATCATCCTCATGAAATGCGTCCAGAAACAGAATCTCTTTACTTGATGCGTATGTTCCGTGCTCAACGTAATTTTTATATCACTGGATTTTCATTATTCGTGTGGTTTGTACTACATCGTCTTGTCAGTTTACTTTCGGAACATGCCAAAATGTCAGCTTCCGAAGAGGCGAGTATTAAACAAGCTCAAAGTGCAACAGCAGCAGCACAACGTTTGTTAGATCAATCAAAGTCACTGATAGTGATACGGAAGATATATATCCTGATACTGTAGAAGCATTGAAAGATGAATTGGCGAAATTAACTAGGAAATTTGAATCTGAAGAAAAAGCTCATCAAAGAACTAAACAAGATTTAGAAACTTTAAAGAAACAAACTCTTCAAACTAATACTGAATACGATCGTGTCACACAAGAATGCCAAAAACTACAATATCGTCTTCAGATGTTAGAAAGTGGTGGT]

[+] EMBL CD114067             [ATCATCCTCATGAAATGCGTCCAGAAACAGAATCTCTTTACTTGATGCGTATGTTCCGTGCTCAACGTAATTTTTATATCACTGGATTTTCATTATTCGTGTGGTTTGTACTACATCGTCTTGTCAGTTTACTTTCGGAACATGCCAAAATGTCAGCTTCCGAAGAGGCGAGTATTAAACAAGCTCAAAGTGCAACAGCAGCAGCACAACGTTTGTTAGATCAATCAAAGTCACTGATAGTGATACGGAAGATATATATCCTGATACTGTAGAAGCATTGAAAGATGAATTGGCGAAATTAACTAGGAAATTTGAATCTGAAGAAAAAGCTCATCAAAGAACTAAACAAGATTTAGAAACTTTAAAGAAACAAACTCTTCAAACTAATACTGAATACGATCGTGTCACACAAGAATGCCAAAAACTACAATATCGTCTTCAGATGTTAGAAAGTGGTGGT]




>consensus_8864#1
ATCATCCTCATGAAATGCGTCCAGAAACAGAATCTCTTTACTTGATGCGTATGTTCCGTG
CTCAACGTAATTTTTATATCACTGGATTTTCATTATTCGTGTGGTTTGTACTACATCGTC
TTGTCAGTTTACTTTCGGAACATGCCAAAATGTCAGCTTCCGAAGAGGCGAGTATTAAAC
AAGCTCAAAGTGCAACAGCAGCAGCACAACGTTTGTTAGATCAATCAAAGTCACTGATAG
TGATACGGAAGATATATATCCTGATACTGTAGAAGCATTGAAAGATGAATTGGCGAAATT
AACTAGGAAATTTGAATCTGAAGAAAAAGCTCATCAAAGAACTAAACAAGATTTAGAAAC
TTTAAAGAAACAAACTCTTCAAACTAATACTGAATACGATCGTGTCACACAAGAATGCCA
AAAACTACAATATCGTCTTCAGATGTTAGAAAGTGGTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8864#0      -CCCTCGAGCCAANAATTCGGCACGAGGACAGAATCTCTTTACTTGATGCGTATGTTCCG 59
consensus_8864#1      ATCATCC--TCATGAAATGCGTCCAGAAACAGAATCTCTTTACTTGATGCGTATGTTCCG 58
                        * **    **  ** *  *  *    ********************************

consensus_8864#0      TGCTCAACGTAATTTTTATATCACTGGATTTTCATTATTCGTGTGGTTTGTACTACATCG 119
consensus_8864#1      TGCTCAACGTAATTTTTATATCACTGGATTTTCATTATTCGTGTGGTTTGTACTACATCG 118
                      ************************************************************

consensus_8864#0      TCTTGTCAGTTTACTTTCGGAACATGCCAAAATGTCAGCTTCCGAAGAGGCGAGTATTAA 179
consensus_8864#1      TCTTGTCAGTTTACTTTCGGAACATGCCAAAATGTCAGCTTCCGAAGAGGCGAGTATTAA 178
                      ************************************************************

consensus_8864#0      ACAAGCTCAAAGTGCAACAGCAGCAGCACAACGTTTGTTAGATCAATCAAAAGTCACTGA 239
consensus_8864#1      ACAAGCTCAAAGTGCAACAGCAGCAGCACAACGTTTGTTAGATCAATCAAA-GTCACTGA 237
                      *************************************************** ********

consensus_8864#0      TAGTGATACGGAAGATATATATCCTGATACTGTAGAAGCATTGAAAGATGAATTGGCGAA 299
consensus_8864#1      TAGTGATACGGAAGATATATATCCTGATACTGTAGAAGCATTGAAAGATGAATTGGCGAA 297
                      ************************************************************

consensus_8864#0      ATTAACTAGGAAATTTGAATCTGAAGAAAAAGCTCATCAAAGAACTAAACAAGATTTAGA 359
consensus_8864#1      ATTAACTAGGAAATTTGAATCTGAAGAAAAAGCTCATCAAAGAACTAAACAAGATTTAGA 357
                      ************************************************************

consensus_8864#0      AACTTTAAAGAAACAAACTCTTCAAACTAATACTGAATACGATCGTGTCACACAAGAATG 419
consensus_8864#1      AACTTTAAAGAAACAAACTCTTCAAACTAATACTGAATACGATCGTGTCACACAAGAATG 417
                      ************************************************************

consensus_8864#0      CCAAAAACTACAATATCGTCTTCAGATGTTAGAAAGTGGTGGTTCAACAAACAAGAAGGC 479
consensus_8864#1      CCAAAAACTACAATATCGTCTTCAGATGTTAGAAAGTGGTGGT----------------- 460
                      *******************************************                 

consensus_8864#0      TGATTAGATCTGTGATCACACACACACACACACACACTTTCTCTCTCTCAACATATAAAA 539
consensus_8864#1      ------------------------------------------------------------
                                                                                  

consensus_8864#0      AACAATATTTTGACACTAATCATTGTTGATCCTTATCCGGTATCAATGAAACAAGAATTT 599
consensus_8864#1      ------------------------------------------------------------
                                                                                  

consensus_8864#0      ACATCGTTCTATGTGTTTATTTTTGCATGTTATACCTTTCAGATATTCAACGTATCTATT 659
consensus_8864#1      ------------------------------------------------------------
                                                                                  

consensus_8864#0      GCTTATGGTTTTGAAAACAGTTCGCTTTTGTAACTTCTTTTTCTCTCTCAACACATGAGT 719
consensus_8864#1      ------------------------------------------------------------
                                                                                  

consensus_8864#0      TTATTGCTCTATATATAGATGTAGATGTAATAATGTTGAAATGAATTTAT 769
consensus_8864#1      --------------------------------------------------