cluster # 8866

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Schistosoma mansoni
cluster # 8866 cluster # 8866 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8866#0 length = 967 sequences # 4

consensus_8866#1 length = 623 sequences # 2
consensus_8866#2 length = 166 sequences # 1

consensusID : consensus_8866#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 967
fasta sequence

                              [ATCAAATTCTAATACTAATACTACTACTAATAATAATGTTACTACTGGAAAAACCTACTGTAAATAGTATCAATGTTTTATCAAATTCAAATAATTCTGTATATGATAGTCAAACTATTTTAACCGATTGCATTTTAGGTATATTTCGATTTTTAGTTAATGTTTCACATAATGAATTCGCTAGTGAACGTCTTGGTGCTTGTTCAGGTTTCCTAGAAACTATTTTTGATTGCCTACTCAAGTTGCCTGATCGTTTGCCTGGAACAAAAAGATTTGATGTGATTGTTTTAGTGCTTTGTCTTTTGGTAAATATGTGTGAACATTGTCCTGAAAATCGTACCCGAATTGTATATTTGGATATTACAAAATCATGTCTTAAACAAGGCTCTCCAACGAATGTGAAAGATGTTAAATATATCGATACATATGATGATGAAGAGGAAGATGATGATGACGACGTAAATACAGATACAAATACTTCACGACAAGTTGTAACCACATCTGCACTTGACGAACTCATACAACTATTTCTCACTCGAGAAGAATGCGCACGTAACCATGATTTCGAGAGAGATGATGATGAAGCTATGGCAGCTGCGGCTGCCCGTAAACGTTCTGAAGAATTAGAAGATTTTGAAAATAATTCTAAACAATTACGCCCAGGTTATGCTAATCCTACTGTCGAAGAAGCTGGCTTGAAATGGCGTTTAATAGAGGATCGAAGAGCAATGAATCTGAATAATAGAGGATTATTAGGTCGGAATAAAAGACGATTGTACCGTAAACAAAAGTGTAAAAGTATTGGTAATAAACCACGGCCAAATATAGGGGGTTCCGATGAAGACGAGGAGGATTCCGATGATGTAGATGACTTGAATGATGATGATGATTGCATTCGAGATGATGATTTGGAACAAAATGATGAAGGTGATGATGATGACGAGGACGACGATGATTATTGATAATC]

[+] EMBL CD064560             [ATCAAATTCTAATACTAATACTACTACTAATAATAATGTTACTACTGGAAAAACCTACTGTAAATAGTATCAATGTTTTATCAAATTCAAATAATTCTGTATATGATAGTCAAACTATTTTAACCGATTGCATTTTAGGTATATTTCGATTTTTAGTTAATGTTTCACATAATGAATTCGCTAGTGAACGTCTTGGTGCTTGTTCAGGTTTCCTAGAAACTATTTTTGATTGCCTACTCAAGTTGCCTGATCGTTTGCCTGGAACAAAAAGATTTGATGTGATTGTTTTAGTGCTTTGTCTTTTGGTAAATATGTGTGAACATTGTCCTGAAAATCGTACCCGAATTGTATATTTGGATATTACAAAATCATGTCTTAAACAAGGCTCTCCAACGAATGTGAAAGATGTTAAATATATCGATACATATGATGATGAAGAGGAAGATGATGATGACGACGTAAATACAGATACAAATACTTCACGACAAGTTGTAACCACATCTGCACTTGACGAACTCATACAACTATTTCTCACTCGAGAAGAATGCGCACGTAACCATGATTTCGAGAGAGATGATGATGAAGCTATGGCAGCTGC                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD064547             [ATCAAATTCTAATACTAATACTACTACTAATAATAATGTTACTA TGGAAAAACCTACTGTAAATAGTATCAATGTTTTATCAAATTCAAATAATTCTGTATATGATAGTCAAACTATTTTAACCGATTGCATTTTAGGTATATTTCGATTTTTAGTTAATGTTTCACATAATGAATTCGCTAGTGAACGCCTTGGTGCTTGTTCAGGTTTCCTAGAAACTATTTTTGATTGCCTACTCAAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD087725             [                                                                                                                                                                                                                                                                                                                                                                                                                                    ATACATATGATGATGAAGAGGAAGATGATGATGACGACGTAAATACAGATACAAATACTTCACGACAAGTTGTAACCACATCTGCACTTGACGAACTCATACAACTATTTCTCACTCGAGAAGAATGCGCACGTAACCATGATTTCGAGAGAGATGATGATGAAGCTATGGCAGCTGCGGCTGCCCGTAAACGTTCTGAAGAATTAGAAGATTTTGAAAATAATTCTAAACAATTACGCCCAGGTTATGCTAATCCTACTGTCGAAGAAGCTGGCTTGAAATGGCGTTTAATAGAGGATCGAAGAGCAATGAATCTGAATAATAGAGGATTATTAGGTCGGAATAAAAGACGATTGTACCGTAAACAAAAGTGTAAAAGTATTGGTAATAAACCACGGCCAAATATAGGGGGTTCCGATGAAGACGAGGAGGATTCCGATGATGTAGATGACTTGAATGATGATGATGATTGCATTCGAGATGATGATTTGGAACAAAATGATGAAGGTGATGATGATGACGAGGACGACGATGATTATTGATAATC]
[+] EMBL CD183378             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ACTTGACGAACTCATACAACTATTTCTCACTCGAGAAGAATGCGCACGTAACCATGATTTCGAGAGAGATGATGATGAAGCTATGGCAGCTGCGGCTGCCCGTAAACGTTCTGAAGAATTAGAAGATTTTGAAAATAATTCTAAACAATTACGCCCAGGTTATGCTAATCCTACTGTCGAAGAAGCTGGCTTGAAATGGCGTTTAATAGAGGATCGAAGAGCAATGAATCTGAATAATAGAGGATTATTAGGTCGGAATGAAAAACGATTGTACCGTAAACAAAAGTGTAAAAGTATTGTAAATAAACAACGGCAAAATATAGGGGGTTCCGATGAAGACGAGGAGGATTCCGATGATGTAGATGACTTGAATGATGATGATGATTGCATTGAAGATGATGATTTGGAAGAGAATGATGgtg                                        ]




>consensus_8866#0
ATCAAATTCTAATACTAATACTACTACTAATAATAATGTTACTACTGGAAAAACCTACTG
TAAATAGTATCAATGTTTTATCAAATTCAAATAATTCTGTATATGATAGTCAAACTATTT
TAACCGATTGCATTTTAGGTATATTTCGATTTTTAGTTAATGTTTCACATAATGAATTCG
CTAGTGAACGTCTTGGTGCTTGTTCAGGTTTCCTAGAAACTATTTTTGATTGCCTACTCA
AGTTGCCTGATCGTTTGCCTGGAACAAAAAGATTTGATGTGATTGTTTTAGTGCTTTGTC
TTTTGGTAAATATGTGTGAACATTGTCCTGAAAATCGTACCCGAATTGTATATTTGGATA
TTACAAAATCATGTCTTAAACAAGGCTCTCCAACGAATGTGAAAGATGTTAAATATATCG
ATACATATGATGATGAAGAGGAAGATGATGATGACGACGTAAATACAGATACAAATACTT
CACGACAAGTTGTAACCACATCTGCACTTGACGAACTCATACAACTATTTCTCACTCGAG
AAGAATGCGCACGTAACCATGATTTCGAGAGAGATGATGATGAAGCTATGGCAGCTGCGG
CTGCCCGTAAACGTTCTGAAGAATTAGAAGATTTTGAAAATAATTCTAAACAATTACGCC
CAGGTTATGCTAATCCTACTGTCGAAGAAGCTGGCTTGAAATGGCGTTTAATAGAGGATC
GAAGAGCAATGAATCTGAATAATAGAGGATTATTAGGTCGGAATAAAAGACGATTGTACC
GTAAACAAAAGTGTAAAAGTATTGGTAATAAACCACGGCCAAATATAGGGGGTTCCGATG
AAGACGAGGAGGATTCCGATGATGTAGATGACTTGAATGATGATGATGATTGCATTCGAG
ATGATGATTTGGAACAAAATGATGAAGGTGATGATGATGACGAGGACGACGATGATTATT
GATAATC

consensusID : consensus_8866#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 623
fasta sequence

                              [TGTAAAAGTATTGTAAATAGACAACGGCAAAATATAGGGGGTTCCGATGAAGACGAGGAGGATTCCGATGGTGTAGATGACTTGAATGATGATGATGATTGCATTGAAGATGATGATTTGGAAGAGAATGATGGTGATGATGATGACGAGGACGACGATGATGATGAAAGCGTTGGCAGTGGTGCAGATGTTGAATTTGTCGCTGACACACAAGAGGAACAAGAAAAGTTAGCCAAAAGTATGTCTCAAGCCCAACAACATATGGAAGATTCGGTGGTGGCTGCTTATGCTGCCCTCCTACTTGGCTGTATTCTACAATCAAGTCCACGTTATACTGATCGTATTCGATCTAAATTACCAGATGGTCAATTTCGTCCATTAGCAATTATGTTAGCTAAACTACTTAGCTTTTTATCTTTAACCAAAGGTGTAGGATCTTCAGGTTCTGAATCTATTCTACGTATTGTTAGAATATTAGAAGCACAAGATAAACAAAATACAAAAATATCAACCGATGATAATGATGGTGGTGACAGTTAATATATGTGTATAATTACTATTCCTTTGCTTCATTTTTGATATTCCTTTGTTTTTTGTCTATGTTTATCATGTGTTTTATTTGT]

[+] EMBL CD147106             [TGTAAAAGTATTGTAAATAGACAACGGCAAAATATAGGGGGTTCCGATGAAGACGAGGAGGATTCCGATGGTGTAGATGACTTGAATGATGATGATGATTGCATTGAAGATGATGATTTGGAAGAGAATGATGGTGATGATGATGACGAGGACGACGATGATGATGAAAGCGTTGGCAGTGGTGCAGATGTTGAATTTGTCGCTGACACACAAGAGGAACAAGAAAAGTTAGCCAAAAGTATGTCTCAAGCCCAACAACATATGGAAGATTCGGTGGTGGCTGCTTATGCTGCCCTCCTACTTGGCTGTATTCTACAATCAAGTCCACGTTATACTGATCGTATTCGATCTAAATTACCAGATGGTCAATTTCGTCCATTAGCAATTATGTTAGCTAAACTACTTAGCTTTTTATCTTTAACCAAAGGTGTAGGATCTTCAGGTTCTGAATCTATTCTACGTATTGTTAGAATATTAGAAGCACAAGATAAACAAAATACAAAAATATCAACCGATGATAATGATGGTGGTGACAGTTAATATATGTGTATAATTACTATTCCTTTGCT                                                      ]
[+] EMBL CD197068             [                                                                                                                                                                                                                                 AAGTTAGCCAAAAGTATGTCTCAAGCCCAACAACATATGGAAGATTCGGTGGTGGCTGCTTATGCTGCCCTCCTACTTGGCTGTATTCTACAATCAAGTCCACGTTATACTGATCGTATTCGATCTAAATTACCAGATGGTCAATTTCGTCCATTAGCAATTATGTTAGCTAAACTACTTAGCTTTTTATCTTTAACCAAAGGTGTAGGATCTTCAGGTTCTGAATCTATTCTACGTATTGTTAGAATATTAGAAGCACAAGATAAACAAAATACAAAAATATCAACCGATGATAATGATGGTGGTGACAGTTAATATATGTGTATAATTACTATTCCTTTGCTTCATTTTTGATATTCCTTTGTTTTTTGTCTATGTTTATCATGTGTTTTATTTGT]




>consensus_8866#1
TGTAAAAGTATTGTAAATAGACAACGGCAAAATATAGGGGGTTCCGATGAAGACGAGGAG
GATTCCGATGGTGTAGATGACTTGAATGATGATGATGATTGCATTGAAGATGATGATTTG
GAAGAGAATGATGGTGATGATGATGACGAGGACGACGATGATGATGAAAGCGTTGGCAGT
GGTGCAGATGTTGAATTTGTCGCTGACACACAAGAGGAACAAGAAAAGTTAGCCAAAAGT
ATGTCTCAAGCCCAACAACATATGGAAGATTCGGTGGTGGCTGCTTATGCTGCCCTCCTA
CTTGGCTGTATTCTACAATCAAGTCCACGTTATACTGATCGTATTCGATCTAAATTACCA
GATGGTCAATTTCGTCCATTAGCAATTATGTTAGCTAAACTACTTAGCTTTTTATCTTTA
ACCAAAGGTGTAGGATCTTCAGGTTCTGAATCTATTCTACGTATTGTTAGAATATTAGAA
GCACAAGATAAACAAAATACAAAAATATCAACCGATGATAATGATGGTGGTGACAGTTAA
TATATGTGTATAATTACTATTCCTTTGCTTCATTTTTGATATTCCTTTGTTTTTTGTCTA
TGTTTATCATGTGTTTTATTTGT

consensusID : consensus_8866#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 166
fasta sequence

                              [GGATCATGCACTATCGGTCCTATTTCTCACTCGAGAAGAATGCGCACGTAACCATGATTTCGAGAGAGATGATGATGAAGCTATGGCAGCTGCGGCTGCCCGTAAACGTTCTGAAGAATTAGAAGATTTTGAAAATAATTCTAAACAATTACGCCCAGGTTATGCT]

[+] EMBL CD062460             [GGATCATGCACTATCGGTCCTATTTCTCACTCGAGAAGAATGCGCACGTAACCATGATTTCGAGAGAGATGATGATGAAGCTATGGCAGCTGCGGCTGCCCGTAAACGTTCTGAAGAATTAGAAGATTTTGAAAATAATTCTAAACAATTACGCCCAGGTTATGCT]




>consensus_8866#2
GGATCATGCACTATCGGTCCTATTTCTCACTCGAGAAGAATGCGCACGTAACCATGATTT
CGAGAGAGATGATGATGAAGCTATGGCAGCTGCGGCTGCCCGTAAACGTTCTGAAGAATT
AGAAGATTTTGAAAATAATTCTAAACAATTACGCCCAGGTTATGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8866#0      ATCAAATTCTAATACTAATACTACTACTAATAATAATGTTACTACTGGAAAAACCTACTG 60
consensus_8866#2      ------------------------------------------------------------
consensus_8866#1      ------------------------------------------------------------
                                                                                  

consensus_8866#0      TAAATAGTATCAATGTTTTATCAAATTCAAATAATTCTGTATATGATAGTCAAACTATTT 120
consensus_8866#2      ------------------------------------------------------------
consensus_8866#1      ------------------------------------------------------------
                                                                                  

consensus_8866#0      TAACCGATTGCATTTTAGGTATATTTCGATTTTTAGTTAATGTTTCACATAATGAATTCG 180
consensus_8866#2      ------------------------------------------------------------
consensus_8866#1      ------------------------------------------------------------
                                                                                  

consensus_8866#0      CTAGTGAACGTCTTGGTGCTTGTTCAGGTTTCCTAGAAACTATTTTTGATTGCCTACTCA 240
consensus_8866#2      ------------------------------------------------------------
consensus_8866#1      ------------------------------------------------------------
                                                                                  

consensus_8866#0      AGTTGCCTGATCGTTTGCCTGGAACAAAAAGATTTGATGTGATTGTTTTAGTGCTTTGTC 300
consensus_8866#2      ------------------------------------------------------------
consensus_8866#1      ------------------------------------------------------------
                                                                                  

consensus_8866#0      TTTTGGTAAATATGTGTGAACATTGTCCTGAAAATCGTACCCGAATTGTATATTTGGATA 360
consensus_8866#2      ------------------------------------------------------------
consensus_8866#1      ------------TGTAAAAGTATTGT----AAATAGACAACGGCAAAATATAGGGGGTTC 44
                                                                                  

consensus_8866#0      TTACAAAATCATGTCTTAAACAAGGCTCTCCAACGAATGTGAAAGATGTTAAATATATCG 420
consensus_8866#2      ------------------------------------------------------------
consensus_8866#1      CGATGAAGACGAGGAG-GATTCCGATGGTGTAGATGACTTGAATGATGATGATGATTGCA 103
                                                                                  

consensus_8866#0      ATACATATGATGATGAAGAGGAAGATGATGATGACGACGTAAATACAGATACAAATACTT 480
consensus_8866#2      ------------------------------------------------------------
consensus_8866#1      TTGAAGATGATGATTTGGAAGAGAATGATGGTGATGATGATGACGAGGACGACGATGATG 163
                                                                                  

consensus_8866#0      CACGACAAGTTGTAACCACATCTGCACTTGACGAACTCATACAACTATTTCTCACTCGAG 540
consensus_8866#2      -------------------------GGATCATGCACTATCGGTCCTATTTCTCACTCGAG 35
consensus_8866#1      ATGAAAGCGTTGGCAGTGGTGCAGATGTTGAATTTGTCGCTGACACACAAGAGGAACAAG 223
                                                  * *     *         *         * **

consensus_8866#0      AAGAATGCGCACGTAACCATGATTTCGAGAGAGATGATGATGAAGCTATGGCAGCTGCGG 600
consensus_8866#2      AAGAATGCGCACGTAACCATGATTTCGAGAGAGATGATGATGAAGCTATGGCAGCTGCGG 95
consensus_8866#1      AAAAGTTAGC-CAAAAGTATG-TCTCAAGCCCAACAAC-ATATGGAAGATTCGGTGGTGG 280
                      ** * *  ** *  **  *** * ** **    *  *  **   *      * *  * **

consensus_8866#0      CTGCCCGTAAACGTTCTGAAGAATTAGAAGATTTTGAAAATAATTCTAAACAATTACGCC 660
consensus_8866#2      CTGCCCGTAAACGTTCTGAAGAATTAGAAGATTTTGAAAATAATTCTAAACAATTACGCC 155
consensus_8866#1      CTGCTTATGC-TGCCCTCCTACTTGGCTGTATTCTACAATCAAGTCCACGTTATACTGAT 339
                      ****   *    *  **      *      *** *  **  ** ** *    **   *  

consensus_8866#0      CAGGTTATG-CTAATCCTACTGTCGAAGAAGCTGGCTTGAAATGGCGTTTAATAGAGGAT 719
consensus_8866#2      CAGGTTATG-CT------------------------------------------------ 166
consensus_8866#1      CGTATTCGATCTAAATTACCAGATGGTCAATTTCGTCCATTAGCAATTATGTTAGCTAAA 399
                      *   **    **                                                

consensus_8866#0      CGAAG-AGCAATGAATCTGAATAATAGAGGATTATTAGGTCGGAATAAAAGACGATTGTA 778
consensus_8866#2      ------------------------------------------------------------
consensus_8866#1      CTACTTAGCTTTTTATCTTTAACCAAAGGTGTAGGATCTTCAGGTTCTGAATCTATTCTA 459
                                                                                  

consensus_8866#0      CCGTAAACAAAAGTGTAAAAGTATTGGTAATAAACCACGGCCAAATATAGGGGGTTCCGA 838
consensus_8866#2      ------------------------------------------------------------
consensus_8866#1      CGTATTGTTAGAATATTAGAA-GCACAAGATAAACAAAATACAAAAATATCAACCGATGA 518
                                                                                  

consensus_8866#0      TGAAGACGAGGAGGATTCCGATGATGTAGATGACTTGAATGATGATGATGATTGCATTCG 898
consensus_8866#2      ------------------------------------------------------------
consensus_8866#1      TAATGATGGTGGTGACAGTTAATATATGTGTATAATTACTATTCCT--TTGCTTCATTTT 576
                                                                                  

consensus_8866#0      AGATGATGATTTGGAACAAAATGATGAAGGTGATGATGATGACGAGGACGACGATGATTA 958
consensus_8866#2      ------------------------------------------------------------
consensus_8866#1      TGATATTCCTTTGTTTTTTGTCTATGTTTATCATGTGTTTTATTTGT------------- 623
                                                                                  

consensus_8866#0      TTGATAATC 967
consensus_8866#2      ---------
consensus_8866#1      ---------