cluster # 8867

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Schistosoma mansoni
cluster # 8867 cluster # 8867 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8867#0 length = 646 sequences # 6

consensus_8867#1 length = 256 sequences # 1

consensusID : consensus_8867#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 646
fasta sequence

                              [TAACACGACTTTCTTCATAATTCTTTTTCCACTCTTTGTCATACGCCATGAGTTTTCTCCCTTCTTCCTCCTCTTCAGCTTTGCGTTTTCTTTCTGAAGACTGTTTTTGCTCTTCTTCCACCCTTAATCTCTCAAGATCAGCGAACAGTTTGCATGTTTGCACATATATGGCATGACGCCGTTTTTCAGGGTCATCTTCTTCAATCGTAATAGATCCAGTCGTCTTTTTAATACGTTTTCGTTTTTCAATCATCATCTGTTCAACAAGATCTTTCGCTTCCTCTACTACTTCTTTACACTTGCGGGAAGTCTCGGGGTCATCCAGAGTTTTGTAAGCCTTGTTTACAGCTTCGAAGGCTTTCTGAGATCTTTCAATATCATCTGGGTTTTTATCCGGATGGACAAGCAGGGACAGCTGTCTGTATTTCTTTTTTTATATCAGCCATTGATGCATCAGGATCCACTTGTAAAACATCATATGGATTCAAATTAAAATAAGTTGATCCGGGCCGGTTAAGTCGATCTATTTGTTGCTTCGGAGTTAAAACTGAATCCCGCTTCTCAATAGCCTTAACTTCTTGGTAAAATGTTGAAAACAATTCATTAGGCCCAGGGTTCGTAGACATCTTAGACTTGAGTAGCACTA]

[+] EMBL CD170667             [TAACACGACTTTCTTCATAATTCTTTTTCCACTCTTTGTCATACGCCATGAGTTTTCTCCCTTCTTCCTCCTCTTCAGCTTTGCGTTTTCTTTCTGAAGACTGTTTTTGCTCTTCTTCCACCCTTAATCTCTCAAGATCAGCGAACAGTTTGCATGTTTGCACATATATGGCATGACGCCGTTTTTCAGGGTCATCTTCTTCAATCGTAATAGATCCAGTCGTCTTTTTAATACGTCTTCGTTTTTCAATCATCATCTGTTCAACAAGATCTTTCGCTTCCTCTACTACTTCTTTACACTTGCGGGAAGTCTCGGGGTCATCCAGAGTTTTGTAAGCCTTGTTTACAGCTTCGAAGGCTTTCTGAGATCTTTCAATATCATCTGGGTTTTTA                                                                                                                                                                                                                                                              ]
[-] EMBL CD119684             [                                                                                                                                                                                                                       CCAGTCGTCTTTTTAATACGTTTTCGTTTTTCAATCGTCATCTGTTCAACAAGATCTTTCGCTTCCTCTACTACTTCTTTACACTTGCGGGAAGTCTCGGGGTCATCCAGAGTTTTGTAAGCCTTGTTTACAGCTTCGAAGGCTTTCTGAGATCTTTCAATATCATCTGGGTTTTTATCTGGATGGACAAGCAGGGACAGCTGTCTGTATTTC TTTCTTATATCAGCCATTGAAGCtgc                                                                                                                                                                                               ]
[-] EMBL CD146344             [                                                                                                                                                                                                                       CCAGTCGTCTTTTTAATACGTTTTCGTTTTTCAATCATCATCTGTTCAACAAGATCTTTCGCTTCCTCTACTACTTCTTTACACTTGCGGGAAGTCTCGGGGTCATCCAGAGTTTTGTAAGCCTTGTTTACAGCTTCGAAGGCTTTCTGAGATCTTTCAATATCATCTGGGTTTTTATCCGGATGGACAAGCAGGGACAGCTGTCTGTATTTCTTTTTT                                                                                                                                                                                                                    ]
[+] EMBL CD146338             [                                                                                                                                                                                                                                                                   TTCAACAAGATCTTTCGCTTCCTCTACTACTTCTTTACACTTGCGGGAAGTCTCGGGGTCATCCAGAGTTTTGTAAGCCTTGTTTACAGCTTCGAAGGCTTTCTGAGATCTTTCAATATCATCTGGGTTTTTATCCGGATGGACAAGCAGGGACAGCTGTCTGTATTTCTTTTT                                                                                                                                                                                                                     ]
[-] EMBL CD190484             [                                                                                                                                                                                                                                                                                                                                                                                 TTTCAATATCATCTGGGTTTTTATCCGGATGGACAAGCAGGGACAGCTGTCTGTATTTC TTTTTTATATCAGCCATTGATGCATCAGGATCCACTTGTAAAACATCATA                                                                                                                                                                       ]
[-] EMBL CD141967             [                                                                                                                                                                                                                                                                                                                                                                                        ATCATCTGGGTTTTTATCCGGATGGACAAGCAGGGACAGCTGTCTGTATTTCTTTTTTTATATCAGCCATTGATGCATCAGGATCCACTTGTAAAACATCATATGGATTCAAATTAAAATAAGTTGATCCGGGCCGGTTAAGTCGATCTATTTGTTGCTTCGGAGTTAAAACTGAATCCCGCTTCTCAATAGCCTTAACTTCTTGGTAAAATGTTGAAAACAATTCATTAGGCCCAGGGTTCGTAGACATCTTAGACTTGAGTAGCACTA]




>consensus_8867#0
TAACACGACTTTCTTCATAATTCTTTTTCCACTCTTTGTCATACGCCATGAGTTTTCTCC
CTTCTTCCTCCTCTTCAGCTTTGCGTTTTCTTTCTGAAGACTGTTTTTGCTCTTCTTCCA
CCCTTAATCTCTCAAGATCAGCGAACAGTTTGCATGTTTGCACATATATGGCATGACGCC
GTTTTTCAGGGTCATCTTCTTCAATCGTAATAGATCCAGTCGTCTTTTTAATACGTTTTC
GTTTTTCAATCATCATCTGTTCAACAAGATCTTTCGCTTCCTCTACTACTTCTTTACACT
TGCGGGAAGTCTCGGGGTCATCCAGAGTTTTGTAAGCCTTGTTTACAGCTTCGAAGGCTT
TCTGAGATCTTTCAATATCATCTGGGTTTTTATCCGGATGGACAAGCAGGGACAGCTGTC
TGTATTTCTTTTTTTATATCAGCCATTGATGCATCAGGATCCACTTGTAAAACATCATAT
GGATTCAAATTAAAATAAGTTGATCCGGGCCGGTTAAGTCGATCTATTTGTTGCTTCGGA
GTTAAAACTGAATCCCGCTTCTCAATAGCCTTAACTTCTTGGTAAAATGTTGAAAACAAT
TCATTAGGCCCAGGGTTCGTAGACATCTTAGACTTGAGTAGCACTA

consensusID : consensus_8867#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 256
fasta sequence

                              [CCAGTCGTCTTTTTAATACGTTTTCGTTTTTCAATCATCATCTGTTCAACAAGATCTTTCGCTTCCTGTACTACTTCTTTACACTTGCGGGAAGTCTCGGGGTCATCCAGAGTTTTGTAAGCCTTGTTTACAGCTTCGAAGGCTTTCTGAGATCTTTCAATATCATCTGGGTTTTTATCCGGATAGACAAGCAGGGACAGCTGTCTGTATTCTTTTTTATATCAGCCATTGAAGGGGCAGGACACAATAGAATCNC]

[-] EMBL CD119703             [CCAGTCGTCTTTTTAATACGTTTTCGTTTTTCAATCATCATCTGTTCAACAAGATCTTTCGCTTCCTGTACTACTTCTTTACACTTGCGGGAAGTCTCGGGGTCATCCAGAGTTTTGTAAGCCTTGTTTACAGCTTCGAAGGCTTTCTGAGATCTTTCAATATCATCTGGGTTTTTATCCGGATAGACAAGCAGGGACAGCTGTCTGTATTCTTTTTTATATCAGCCATTGAAGGGGCAGGACACAATAGAATCNC]




>consensus_8867#1
CCAGTCGTCTTTTTAATACGTTTTCGTTTTTCAATCATCATCTGTTCAACAAGATCTTTC
GCTTCCTGTACTACTTCTTTACACTTGCGGGAAGTCTCGGGGTCATCCAGAGTTTTGTAA
GCCTTGTTTACAGCTTCGAAGGCTTTCTGAGATCTTTCAATATCATCTGGGTTTTTATCC
GGATAGACAAGCAGGGACAGCTGTCTGTATTCTTTTTTATATCAGCCATTGAAGGGGCAG
GACACAATAGAATCNC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8867#0      TAACACGACTTTCTTCATAATTCTTTTTCCACTCTTTGTCATACGCCATGAGTTTTCTCC 60
consensus_8867#1      ------------------------------------------------------------
                                                                                  

consensus_8867#0      CTTCTTCCTCCTCTTCAGCTTTGCGTTTTCTTTCTGAAGACTGTTTTTGCTCTTCTTCCA 120
consensus_8867#1      ------------------------------------------------------------
                                                                                  

consensus_8867#0      CCCTTAATCTCTCAAGATCAGCGAACAGTTTGCATGTTTGCACATATATGGCATGACGCC 180
consensus_8867#1      ------------------------------------------------------------
                                                                                  

consensus_8867#0      GTTTTTCAGGGTCATCTTCTTCAATCGTAATAGATCCAGTCGTCTTTTTAATACGTTTTC 240
consensus_8867#1      -----------------------------------CCAGTCGTCTTTTTAATACGTTTTC 25
                                                         *************************

consensus_8867#0      GTTTTTCAATCATCATCTGTTCAACAAGATCTTTCGCTTCCTCTACTACTTCTTTACACT 300
consensus_8867#1      GTTTTTCAATCATCATCTGTTCAACAAGATCTTTCGCTTCCTGTACTACTTCTTTACACT 85
                      ****************************************** *****************

consensus_8867#0      TGCGGGAAGTCTCGGGGTCATCCAGAGTTTTGTAAGCCTTGTTTACAGCTTCGAAGGCTT 360
consensus_8867#1      TGCGGGAAGTCTCGGGGTCATCCAGAGTTTTGTAAGCCTTGTTTACAGCTTCGAAGGCTT 145
                      ************************************************************

consensus_8867#0      TCTGAGATCTTTCAATATCATCTGGGTTTTTATCCGGATGGACAAGCAGGGACAGCTGTC 420
consensus_8867#1      TCTGAGATCTTTCAATATCATCTGGGTTTTTATCCGGATAGACAAGCAGGGACAGCTGTC 205
                      *************************************** ********************

consensus_8867#0      TGTATTTCTTTTTTTATATCAGCCATTGATGCATCAGGATCCACTTGTAAAACATCATAT 480
consensus_8867#1      TGTATT--CTTTTTTATATCAGCCATTGAAGGGGCAGGACACAATAGAATCNC------- 256
                      ******   ******************** *   *****  ** * * *   *       

consensus_8867#0      GGATTCAAATTAAAATAAGTTGATCCGGGCCGGTTAAGTCGATCTATTTGTTGCTTCGGA 540
consensus_8867#1      ------------------------------------------------------------
                                                                                  

consensus_8867#0      GTTAAAACTGAATCCCGCTTCTCAATAGCCTTAACTTCTTGGTAAAATGTTGAAAACAAT 600
consensus_8867#1      ------------------------------------------------------------
                                                                                  

consensus_8867#0      TCATTAGGCCCAGGGTTCGTAGACATCTTAGACTTGAGTAGCACTA 646
consensus_8867#1      ----------------------------------------------