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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8869#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 936 fasta sequence
[CAACTAGCACTGATCTTGTAATTTCAAAAGCAAACTGCGAAAAGAATCAGTCTGAAAATAAAATTGAACAGACATTATTAAGAGAGAATATTACACAAAAATCAGATAATCAATCATCGTTCAAATCACCGATACAAAAACAACAACAGCCACAACAACCTGATTGCCTATCACCTAAACGAAACTATATAATCTCTTTCACTGGCCTGTCATTAGAAGAACGAGATCGCTATGCTGAAATTGTAGAGCGACTAGGTGGAGAAGTAGATAATCTGACTACGTTAAGCGAGAAAACTACACATCTAATTGTGTATGCACCAACACGAAGCGAAAAATGCCTTATCTGTCTCGCTTCTGGCAAGTGGATGTTGCACAAATCCTACTTAGACGCATGCTCACGGGAATCCTGTTGGGTTGATGAAGCAGCATATGAGTGGGGTGGTCCTGGTACTGAGCCCTTATTGATGCAGTTAAGTCCGTTTCCTTGCCCACCCGGTGGTCCTACATTATCACATCAACAGAAAGCTGCTCAGATTAGAGATCTAGCTAGATCTGCACGTCGTTGGCGGTTGTCTGGAGGCAAAGCATTTCATAATTGGAAGGTTATTTTTGGACCGGGTTGTGATAAAGAAAGTAGTTTTAGACGTATATTCGAAGCTGGTGGAGGAAAAGTATTATCAAGCAGTCCACCCTATCCTCCTGCTCATGAAGTTACTCATGCATTTGTTAAAATAAATAATAATTCTGCCATCATACCGTCCACTTTACCGCGTAACTACTCATGGCTGCGCATAGATTATCTTTGTTCCTATTTAAGTTCTGGTGAAAGAAATCTCAAAATCAGAATTCACTCTTTAATCCATCCAGTTTTACAGCTATTCCAATGTATCAATTCCTGATGGAGATTAATCTGATCAATCAATAAAACAATCAACA]
[-] EMBL CD147710 [CAACTAGCACTGATCTTGTAATTTCAAAAGCAAACTGCGAAAAGAATCAGTCTGAAAATAAAATTGAACAGACATTATTAAGAGAGAATATTACACAAAAATCAGATAATCAATCATCGTTCAAATCACCGATACAAAAACAACAACAGCCACAACAACCTGATTGCCTATCACCTAAACGAAACTATATAATCTCTTTCACTGGCCTGTCATTAGAAGAACGAGATCGCTATGCTGAAATTGTAGAGCGACTAGGTGGAGAAGTAGATAATCTGACTACGTTAAGCGAGAAAACTACACATCTAATTGTGTATGCACCAACACGAAGCGAAAAATGCCTTATCTGTCTCGCTTCTGGCAAGTGGATGTTGCACAAATCCTACTTAGACGCATGCTCACGGGAATCCTGTTGGGTTGATGAAGCAGCATATGAGTGGGGTGG ]
[+] EMBL CD115861 [ ACACATCTAATTGTGTATGCACCAACACGAAGCGAAAAATGCCTTATCTGTCTCGCTTCTGGCAAGTGGATGTTGCACAAATCCTACTTAGACGCATGCTCACGGGAATCCTGTTGGGTTGATGAAGCAGCATATGAGTGGGGTGGTCCTGGTACTGAGCCCTTATTGATGCAGTTAAGTCCGTTTCCTTGCCCACCCGGTGGTCCTACATTATCACATCAACAGAAAGCTGCTCAGATTAGAGATCTAGCTAGATCTGCACGTCGTTGGCGGTTGTCTGGAGGCAAAGCATTTCATAATTGGAAGGTTATTTTTGGACCGGGTTGTGATAAAGAAAGTAGTTTTAGACGTATATTCGAAGCTGGTGGAGGAAAAGTATTATCAAGCAGTCCACCCTATCCTCCTGCTCATGAAGTTACTCATGCATTTGTTAAAATAAATAATAATTCTGCCATCATACCGTCCACTTTACCGCGTAACTACTCATGGCTGCGCATAGATTATCTTTGTTCCTATTTAAGTTCTGGTGAAAGAAATCTCAAAATCAGAATTCACTCTTTAATCCATCCAGTTTTACAGCTATTCCAATGTATCAATTCCTGATGGAGATTAATCTGATCAATCAATAAAACAATCAACA]
consensusID : consensus_8869#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 716 fasta sequence
[TTATTAAGACCGCAAACTCCTGGTACTAAAGGTGGACCGGATCCATGTAAAGATAGCATCTGGGATTCAGGTTGAGATCCTATAGAGTCATTCGACTTCAAACGCGAACTGTTTACGGATATGTCACTGCGTATTCCATTTCTAGGTTCCAGCTGAACAAAAATGACTTTTTCACGCTCCAGATTAGCTTCTTCTATGGTAGCATCTTCATCTTCCAGTTCTTCAAATTCGTTTTGTTCATTGTGTATTGATAAGTGGACATTCACGCCAGGTGCTGCTTTAAGGTGTTGTGCGACTATCGCTTTAAGTTCTCTTATTGTCTGAAATTTGCAATATGTCCCTTCAAACAGCAAAGTGGCACTTGAGTTTGAAGGATTTAGGTAGAATGAGTAGTGGGGTGGATATATTTCGATTTCCGCTGACTTTGGTGCTTGGATGGCACGCCGTTCGAAAACAGAAATGTCTGTATGTGTACAACCATAAAAATCAACAAACAGCTTCCACACATTCCTAGGTATTAACGTGATGTCACTTTCCAAGAGCAAGTTTTCTTTTAATTTTCCATCATATAAAATGTCACTGTTATCAACTTTTCCTGGATACTCTTCAGAGGTTTCGTCCACTATTCCACTTTTGGAAACCGAGTCCACAAATTCTTCCCATTTCGTCCACCAGTTAAGAGACAGGATATACCATAAGCCTNCTTTTGTTATCTC]
[-] EMBL CD125748 [TTATTAAGACCGCAAACTCCTGGTACTAAAGGTGGACCGGATCCATGTAAAGATAGCATCTGGGATTCAGGTTGAGATCCTATAGAGTCATTCGACTTCAAACGCGAACTGTTTACGGATATGTCACTGCGTATTCCATTTCTAGGTTCCAGCTGAACAAAAATGACTTTTTCACGCTCCAGATTAGCTTCTTCTATGGTAGCATCTTCATCTTCCAGTTCTTCAAATTCGTTTTGTTCATTGTGTATTGATAAGTGGACATTCACGCCAGGTGCTGCTTTAAGGTGTTGTGCGACTATCGCTTTAAGTTCTCTTATTGTCTGAAATTTGCAATATGTCCCTTCAAACAGCAAAGTGGCACTTGAGTTTGAAGGATTTAGGTA ]
[-] EMBL CD125733 [ CCATGTANAGATAGCATCTGGATTTCAGGTTGAGATCCTATAGAGTCATTCGACTTCAAACGCGAACTATTTACGGGTATGTCACTGCGTATTCCATTTCTAGGTTCCAGCTGAACAAAAATGACTTTTTCACGCTCCAGATTAGCTTCTTCTATGGTAGCATCTTCATCTTCCAGTTCTTCAAATTCGTTTTGTTCATTGTGTATTGATAAGTGGACATTCACGCCAGGTGCTGCTTTAAGGTGTTGTGCGACTATCGCTTTAAGTTCTCTTATTGTCTGAAATTTGCAATATGTCCCTTCAAACAGCAAAGTGGCACTTGAGTTTGAAGGATTTAGGTA ]
[+] EMBL CD165419 [ CATCTTCATCTTCCAGTTCTTCAAATTCGTTTTGTTCATTGTGTATTGATAGGTGGACATTCACGCCAGGTGCTGCTTTAAGGTGTTGTGCGACTATCGCTTTAAGTTCTCTTATTGTCTGAAATTTGCAATATGTCCCTTCAAACAGCAAAGTGGCACTTGAGTTTGAAGGATTTAGGTAGAATGAGTAGTGGGGTGGATATATTTCGATTTCCGCTGACTTTGGTGCTTGGATGGCACGCCGTTCGAAAACAGAAATGTCTGTATGTGTACAACCATAAAAATCAACAAACAGCTTCCACACATTCCTAGGTATTAACGTGATGTCACTTTCCAAGAGCAAGTTTTCTTTTAATTTTCCATCATATAAAATGTCACTGTTATCAACTTTTCCTGGATACTCTTCAGAGGTTTCGTCCACTATTCCACTTTTGGAAACCGAGTCCACAAATTCTTCCCATTTCGTCCACCAGTTAAGAGACAGGATATACCATAAGCCTNCTTTTGTTATCTC]
consensusID : consensus_8869#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence
[TGTAAAGATAGCATCTGGGATTCAGGTTGAGATCCTATAGAGTCATTCGACTTCAAACGCGAACTATTTACGGATATGTCACTGCGTATTCCATTTCTAGGTTCCAGCTGAACAAAAATGACTTTTTCACGCTCCAGATTAGCTTCTTCTATGGTAGCATCTTCATCTTCCAGTTCTTCAAATTCGTTTTGTTCATTGTGTATTGATAAGTGGACATTCACGCCAGGTGCTGCTTTAAGGTGTTGTGCGACTATCGCTTTAAGTTCTCTTATTGTCTGAAATTTGCAATATGTCCCTTCAAACAGCAAAGTGGCACTTGAGTTTGAAGGATTTAGGTAGAATGAGTAGTGGGGTGGTCCTGGTACTGAGCCCTTATTGATGCAGTTAAGTCCGTTTCCTTGTCCACCCGGTGGTCCTACATTATCACATCAACAGAAAGCTGCTCAGATTAGAGATCTAGCTAGATCTGCACGTCGTTGGCGGTTGTCTGGAGGCANAGCATTTCATAATTAGAAGGTTATTTTTGGACCTGGTTGTGATAAAGAAAGTAGTTTTAGACGTATTATCGAAGCTGGTGGAGGAAAGTATTATCAAGCA]
[+] EMBL CD095701 [TGTAAAGATAGCATCTGGGATTCAGGTTGAGATCCTATAGAGTCATTCGACTTCAAACGCGAACTATTTACGGATATGTCACTGCGTATTCCATTTCTAGGTTCCAGCTGAACAAAAATGACTTTTTCACGCTCCAGATTAGCTTCTTCTATGGTAGCATCTTCATCTTCCAGTTCTTCAAATTCGTTTTGTTCATTGTGTATTGATAAGTGGACATTCACGCCAGGTGCTGCTTTAAGGTGTTGTGCGACTATCGCTTTAAGTTCTCTTATTGTCTGAAATTTGCAATATGTCCCTTCAAACAGCAAAGTGGCACTTGAGTTTGAAGGATTTAGGTAGAATGAGTAGTGGGGTGGTCCTGGTACTGAGCCCTTATTGATGCAGTTAAGTCCGTTTCCTTGTCCACCCGGTGGTCCTACATTATCACATCAACAGAAAGCTGCTCAGATTAGAGATCTAGCTAGATCTGCACGTCGTTGGCGGTTGTCTGGAGGCANAGCATTTCATAATTAGAAGGTTATTTTTGGACCTGGTTGTGATAAAGAAAGTAGTTTTAGACGTATTATCGAAGCTGGTGGAGGAAAGTATTATCAAGCA]
consensusID : consensus_8869#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence
[ACAACTAGCACTGATCTTGTAATTTCAAAAGCAAACTGCGAAAAGAATCAGTCTGAAAATAAAATTGAACAGACATTATTAAGAGAGAATATTACACAAAAATCAGATAATCAATCATCGTTCAAATCACCGATACAAAAACAACAACAGCCACAACAACCTGATTGCCTATCACCTAAACGAAACTATATAATCTCTTTCACTGGCCTGTCATTAGAAGAACGAGATCGCTATGCTGAAATTGTAGAGCGACTAGGTGGAGAAGTAGATAATCTGACTACGTTAAGCGAGAAAACTACACATCTAATTGTCACGAAGCGAAAAATGCCTTATCTGTCTCGCTTCTGGCAAGTGGATGTTGCACAAATCCTACTTAGACGCATGCTCACGGGAATCCTGTTGGGTTGATGAAGCAGGATATGAGTGGGGTG]
[+] EMBL CD147341 [ACAACTAGCACTGATCTTGTAATTTCAAAAGCAAACTGCGAAAAGAATCAGTCTGAAAATAAAATTGAACAGACATTATTAAGAGAGAATATTACACAAAAATCAGATAATCAATCATCGTTCAAATCACCGATACAAAAACAACAACAGCCACAACAACCTGATTGCCTATCACCTAAACGAAACTATATAATCTCTTTCACTGGCCTGTCATTAGAAGAACGAGATCGCTATGCTGAAATTGTAGAGCGACTAGGTGGAGAAGTAGATAATCTGACTACGTTAAGCGAGAAAACTACACATCTAATTGTCACGAAGCGAAAAATGCCTTATCTGTCTCGCTTCTGGCAAGTGGATGTTGCACAAATCCTACTTAGACGCATGCTCACGGGAATCCTGTTGGGTTGATGAAGCAGGATATGAGTGGGGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8869#0 -----------------------CAACTAGCACTGATCTTGTAATTTCAAAAGCAAACTG 37
consensus_8869#3 ----------------------ACAACTAGCACTGATCTTGTAATTTCAAAAGCAAACTG 38
consensus_8869#1 TTATTAAGACCGCAAACTCCTGGTACTAAAGGTGGACCGGATCCATGTAAAGATAGCATC 60
consensus_8869#2 ---------------------------------------------TGTAAAGATAGCATC 15
* *** * *
consensus_8869#0 CGAAAAGAATCAGTCTGAAAATAAAATTGAACAGACATTATTAAGAGAGAATATTACACA 97
consensus_8869#3 CGAAAAGAATCAGTCTGAAAATAAAATTGAACAGACATTATTAAGAGAGAATATTACACA 98
consensus_8869#1 TG---GGATTCAGGTTGAGATCCTATAGAGTCATTCGACTTCAAACGCGAACTGTTTACG 117
consensus_8869#2 TG---GGATTCAGGTTGAGATCCTATAGAGTCATTCGACTTCAAACGCGAACTATTTACG 72
* ** **** *** * * ** * * ** * *** * **
consensus_8869#0 AAAATCAGATAATCAATCATCGTTCAAATCACCGATACAAAAACAACAACAGCCACAACA 157
consensus_8869#3 AAAATCAGATAATCAATCATCGTTCAAATCACCGATACAAAAACAACAACAGCCACAACA 158
consensus_8869#1 GATATGTCACTGCGTATTCCATTTCTAGGTTCCAGCTGAACAAAAATGACTTTTTCACGC 177
consensus_8869#2 GATATGTCACTGCGTATTCCATTTCTAGGTTCCAGCTGAACAAAAATGACTTTTTCACGC 132
* ** * ** *** * ** ** ** ** ** **
consensus_8869#0 ACCTGATT-GCCTATCACCTAAACGAAACTATATAATCTCTTTCACTGGCCTGTCATTAG 216
consensus_8869#3 ACCTGATT-GCCTATCACCTAAACGAAACTATATAATCTCTTTCACTGGCCTGTCATTAG 217
consensus_8869#1 TCCAGATTAGCTTCTTCTATGGTAGCATCTTCATCTTCCAGTTCTTCAAATTCGTTTTGT 237
consensus_8869#2 TCCAGATTAGCTTCTTCTATGGTAGCATCTTCATCTTCCAGTTCTTCAAATTCGTTTTGT 192
** **** ** * * * * * ** ** ** *** * **
consensus_8869#0 AAGAACGAGATCGCTATGCTGAAATTGTAG--AGCGACTAGGTGGAGAAGTAGATAATCT 274
consensus_8869#3 AAGAACGAGATCGCTATGCTGAAATTGTAG--AGCGACTAGGTGGAGAAGTAGATAATCT 275
consensus_8869#1 TCATTGTGTATTGATAAGTGGACATTCACGCCAGGTGCTGCTTTAAGGTGTTGTGCGACT 297
consensus_8869#2 TCATTGTGTATTGATAAGTGGACATTCACGCCAGGTGCTGCTTTAAGGTGTTGTGCGACT 252
** * ** * ** *** * ** ** * ** ** * **
consensus_8869#0 GACTACGTTAAGCGAGAAAACTACACATCTAATTGTGTATGCACCAACACGAAGCGAAAA 334
consensus_8869#3 GACTACGTTAAGCGAGAAAACTACACATCTAATTGT-----------CACGAAGCGAAAA 324
consensus_8869#1 -ATCGCTTTAAGTTCTCTTATTGTCTG--AAATTTGCAATATGTCCCTTCAAACAGCAAA 354
consensus_8869#2 -ATCGCTTTAAGTTCTCTTATTGTCTG--AAATTTGCAATATGTCCCTTCAAACAGCAAA 309
* * ***** * * **** * ** * ***
consensus_8869#0 ATGCCTTATCTGTCTC---GCTTCTGGCA-AGTGGATGTTGCACAAATCCTACTTAGACG 390
consensus_8869#3 ATGCCTTATCTGTCTC---GCTTCTGGCA-AGTGGATGTTGCACAAATCCTACTTAGACG 380
consensus_8869#1 GTGGCACTTGAGTTTGAAGGATTTAGGTAGAATGAGTAGTGGGGTGGATATATTTCGATT 414
consensus_8869#2 GTGGCACTTGAGTTTGAAGGATTTAGGTAGAATGAGTAGTGGGGTGGTCCTGGTAC--TG 367
** * * ** * * ** ** * * ** * ** * *
consensus_8869#0 CATGCTCACGGGAATCCTGTTGGGTTGATGAAGCAGCATATGAGTGGGGTGGTCCTGGTA 450
consensus_8869#3 CATGCTCACGGGAATCCTGTTGGGTTGATGAAGCAGGATATGAGTGGGGTG--------- 431
consensus_8869#1 TCCGCTGACTTTGGT---GCTTGGATGGCACGCCGTTCGAAAACAGAAATGTCTGTATGT 471
consensus_8869#2 AGCCCTTATTGATGC---AGTTAAGTC-CGTTTCCTTGTCCACCCGGTGGTCCTACATTA 423
** * * * * *
consensus_8869#0 CTGAGCCCTTATTGATGCAGTTAAGTCCGTTTCCTTGCCCACCCGGTGGTCCTACATTAT 510
consensus_8869#3 ------------------------------------------------------------
consensus_8869#1 GTACAACCATAAAAATCAACAAA---CAGCTTCCACACATTCCTAGGTATTAACGT-GAT 527
consensus_8869#2 TCACATCAACAGAAAGCTGCT-----CAGATTAGAGATCTAGCTAGATCTGCACGTCGTT 478
consensus_8869#0 CACATCAACAGAAAGCTGCTCAGATTAGAGATCTAGCTAGATCTGCACGTCGTTGGCGGT 570
consensus_8869#3 ------------------------------------------------------------
consensus_8869#1 GTCACTTTCCAAGAGCAAGTTTTCTTTTAATTTTCCATCATATAAAATGTCACTGTTATC 587
consensus_8869#2 GGCGGTTGTCTGGAGGCAN---------AGCATTTCATAAT-TAGAAGGTTATTTTTG-- 526
consensus_8869#0 TGTCTGGAGGCAAAGCATTTCATAATTGGAAGGTTATTTTTGGACCGGGTTGTGATAAAG 630
consensus_8869#3 ------------------------------------------------------------
consensus_8869#1 AACTTTTCCTGGATACTCTTCAGAGGTTTCGTC-CACTATTCCACTTTTGGAAACCGAGT 646
consensus_8869#2 GACCTGGTTGTGATAAAGAAAGTAGTTTTAGACGTATTATCGAAGCTGGTGGAGGAAAGT 586
consensus_8869#0 AAAGTAGTTTTAGACGTATATTCGAAGCTGGTGGAGGAAAAGTATTATCAAGCAGTCCAC 690
consensus_8869#3 ------------------------------------------------------------
consensus_8869#1 -CCACAAATTCTTCCCATTTCGTCCACCAGTTAAGAGACAGGATATACCATAAGCCTNCT 705
consensus_8869#2 ATTATCAAGCA------------------------------------------------- 597
consensus_8869#0 CCTATCCTCCTGCTCATGAAGTTACTCATGCATTTGTTAAAATAAATAATAATTCTGCCA 750
consensus_8869#3 ------------------------------------------------------------
consensus_8869#1 TTTGTTATCTC------------------------------------------------- 716
consensus_8869#2 ------------------------------------------------------------
consensus_8869#0 TCATACCGTCCACTTTACCGCGTAACTACTCATGGCTGCGCATAGATTATCTTTGTTCCT 810
consensus_8869#3 ------------------------------------------------------------
consensus_8869#1 ------------------------------------------------------------
consensus_8869#2 ------------------------------------------------------------
consensus_8869#0 ATTTAAGTTCTGGTGAAAGAAATCTCAAAATCAGAATTCACTCTTTAATCCATCCAGTTT 870
consensus_8869#3 ------------------------------------------------------------
consensus_8869#1 ------------------------------------------------------------
consensus_8869#2 ------------------------------------------------------------
consensus_8869#0 TACAGCTATTCCAATGTATCAATTCCTGATGGAGATTAATCTGATCAATCAATAAAACAA 930
consensus_8869#3 ------------------------------------------------------------
consensus_8869#1 ------------------------------------------------------------
consensus_8869#2 ------------------------------------------------------------
consensus_8869#0 TCAACA 936
consensus_8869#3 ------
consensus_8869#1 ------
consensus_8869#2 ------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||