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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8870#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 982 fasta sequence
[CATTCGGGATGATGGACAGTCGTTGATGAGCGCCTACAATCTCAAAGGAGACTATGTATCCCTTGTCCATAAATCACTCGTAGCTGTATAAATGTCATTCAACCAATATCTCAGTTAGAGGTGAATGGGAATGAATCTGATGCCCAAGAAGATGTATCCAGGTCTTCTCACGCGCGGAGTCTGATTAGCGCAGCAAGCAAAACACAGACTCACATCCATACATAAATGCAATAGATACCAGACTCCAAGTGTATATTACCATGGGAACTCGGTAAACTTCATAGCAAATTATTCCAATACTCATCGGAAGCGTCGGTACCATGTGGGATCTATCTAGATCTCAATGGTGTCGTTCCTGGTCCGGTACGATTCACTGCCCAGAGTAAACCCATGCCACGTTGTTGTCCACGAATGTACTTTGGGGAGCAACATGTACATTTGTCCATCCACCATGTCGTTATGGGGCATTATGTACTCGTCCTGACTGTGCTTTCACACACTCATCGAAAAAAGTATTGCCTGTGGTATCTGCCAACCCAGCTCAAATAGTATGCCGTTTCCAAAACAGATGTACAAATCCCCACTGTCAATTTTACCACCCACCTGTTGTTGTTCAAGCCCCTCCAATCATTGTTCGAAGTTCAGCTTCAACTGTCCCTGTTTTCAATAGCCAAATTCCATGTCGATATGGTTCTGGTTGCACTAATCGTACTAAATGTCCTTTCCTTCATTCTGATTTACCCTCAGTTGATCAACTTAAATGGATTGCACCTTCCAAGAAACAACAATCATCTAATCCAATTTCCACAAAGGCAAACTCTACATAGAAAGCAGTTAAGTCTGTAACCACACTTAATGAATAATGGGTTAGTTGTTATTAATGTTATGGACTAAAGTTTTTTTAAAGACTATTAGTTAACAATATTATGTTTTGTCATGCATTTTTGCTGTTTATTTTTTCAATTTTAATAATAAATAATTG]
[+] EMBL CD126163 [CATTCGGGATGATGGACAGTCGTTGATGAGCGCCTACAATCTCAAAGGAGACTATGTATCCCTTGTCCATAAATCACTCGTAGCTGTATAAATGTCATTCAACCAATATCTCAGTTAGAGGTGAATGGGAATGAATCTGATGCCCAAGAAGATGTATCCAGGTCTTCTCACGCGCGGAGTCTGATTAGCGCAGCAAGCAAAACACAGACTCACATCCATACATAAATGCAATAGATACCAGACTCCAAGTGTATATTACCATGGGAACTCGGTAAACTTCATAGCAAATTATTCCAATACTCATCGGAAGCGTCGGTACCATGTGGGATCTATCTAGATCTCAATGGTGTCGTTCCTGGTCCGGTACGATTCACTGCCCAGAGTAAACCCATGCCACGTTGTTGTCCACGAATGTACTTTGGGGAGCAACATGTACATTTGTCCATCCACCATGTCGTTATGGGGCATTATGTACTCGTCCTGACTGTGCTTTCACACACTCATCGAAAAAAGTATTGGCTGTGGTATCTGNCAAACCAG ]
[-] EMBL CD194470 [ ATGCCA GTTGTT TCCACG ATGTAAATT TGGAGCAACATGTACATTTGTCCATCCACCATGTCGTTATGGGGCATTATGTACTCGTCCTGACTGTGCTTTCACACACTCATCGAAAAAAGTATTGCCTGTGGTATCTGCCAACCCAGCTCAAATAGTATGCCGTTTCCAAAACAGATGTACAAATCCCCACTGTCAATTTTACCACCCACCTGTTGTTGTTCAAGCCCCTCCAATCATTGTTCGAAGTTCAGCTTCAACTGTCCCTGTTTTCAATAGCCAAATTCCATGTCGATATGGTTCTGGTTGCACTAATCGTACTAAATGTCCTTTCCTTCATTCTGATTTACCCTCAGTTGATCAACTTAAATGGATTGCACCTTCCAAGAAACAACAATCATCTAATCCAATTTCCACAAAGGCAAACTCTACGGAGAAAGCAGTTAAGT ]
[+] EMBL CD147956 [ TACATTTGTCCATCCACCATGTCGTTATGGGGCATTATGTACTCGTCCTGACTGTGCTTTCACACACTCATCGAAAAAAGTATTGCCTGTGGTATCTGCCAACCCAGCTCAAATAG ]
[-] EMBL AI067783 [ AATAGCCAAATTCCATGTGGATATGGTTCTGGGTGCACTAATCGTACTAAATGTCCTTTCCTTCAATCTGATTTACCCTCAGTTGACCAACTTAAATGGATTGCACCTTCCAAGAAACAACAATCATCTAATCCAATTTCCACAAAGGCAAACTTTACATGGAAAGCAGTTAAGTCTGTAACCACACTTAATGAATAATGGGTTAGTTGTTATTAATGTTATGGACTAAAGTTTTTTTAAAGACTATTAGTTAACAATATTATGTTTTGTCATGCATTTTTGCTGTTTATTTTTTCAATTTTAATAATAAATAATTG]
[-] EMBL AI067692 [ GTACTAAATGTCCTTTCCTTCATTGTGATTTACCCTCAGTTGATCAACTTAAATGGATTGCACCTTCCAAGAAACAACAATCATGTAATCCAATTTCCACAAAGGCAAACTCTACATAGAAAGCAGTTAAGTCTGTAACCACACTTAATGAATAATGGATTAGTTGTTATTAATGTTATCGACTAAAGTTTTCTTAAAGACTATTAGTTAACAATATTATGTTTTGTCATGCATTTCTGCTGTTTATTTTTTCAATTTTAATAATAAATAATTG]
consensusID : consensus_8870#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 459 fasta sequence
[CAACCAAATATTCCAAGCTCATTGGAGCGTTGTAAATTTTGGCCTAATTGTCGCAATGGTAGTTCCTGTCCGTACATTCATCCCACAGAACCATGCCAGTTGTTTCCACGATGTAAATTTGGAGCAACATGTACATTTGTCCACCCACCATGTCGTTATGGGGCATTATGTACTCGTCCTGACTGTGCTTTCACACACTCATCGAAAAAAGTATTGCCTGTGGTATCTGCCAACCCAGCTCAAATAGTATGCCGTTTCCAAAACAGATGTACAAATCCCCACTGTCAATTTTACCACCCACCTGTTGTTGTTCAAGCCCCTCCAATCATTGTTCGAAGTTCAGCTTCAACTGTCCCTGTTTTCAATAGCCAAATTCCATGTCGATATGGTTCTGGTTGCACTAATCGTACTAAATGTCCTTTCCTTCATTCTGATTTACCCTCAGTTGATCAACTTAAA]
[-] EMBL CD178432 [CAACCAAATATTCCAAGCTCATTGGAGCGTTGTAAATTTTGGCCTAATTGTCGCAATGGTAGTTCCTGTCCGTACATTCATCCCACAGAACCATGCCAGTTGTTTCCACGATGTAAATTTGGAGCAACATGTACATTTGTCCACCCACCATGTCGTTATGGGGCATTATGTACTCGTCCTGACTGTGCTTTCACACACTCATCGAAAAAAGTATTGCCTGTGGTATCTGCCAACCCAGCTCAAATAGTATGCCGTTTCCAAAACAGATGTACAAATCCCCACTGTCAATTTTACCACCCACCTGTTGTTGTTCAAGCCCCTCCAATCATTGTTCGAAGTTCAGCTTCAACTGTCCCTGTTTTCAATAGCCAAATTCCATGTCGATATGGTTCTGGTTGCACTAATCGTACTAAATGTCCTTTCCTTCATTCTGATTTACCCTCAGTTGATCAACTTAAA]
[+] EMBL CD192847 [ AAGTATTGCCTGTGGTATCTGCCAACCCAGCTCAAATAGTATGCCGTTTCCAAAACAGATGTACAAATCCCCACTGTCAATTTTACCACCCACCTGTTGTTGTTCAAGCCCCTCCAATCATTGTTCGAAGTTCAGCTTCAACTGTCCCTGTTTTCAATAGCCAAATTCCATGTCGATATGGTTCTGGTTGCACT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8870#0 CATTCGGGATGATGGACAGTCGTTGATGAGCGCCTACAATCTCAAAGGAGACTATGTATC 60
consensus_8870#1 ------------------------------------------------------------
consensus_8870#0 CCTTGTCCATAAATCACTCGTAGCTGTATAAATGTCATTCAACCAATATCTCAGTTAGAG 120
consensus_8870#1 ------------------------------------------------------------
consensus_8870#0 GTGAATGGGAATGAATCTGATGCCCAAGAAGATGTATCCAGGTCTTCTCACGCGCGGAGT 180
consensus_8870#1 ------------------------------------------------------------
consensus_8870#0 CTGATTAGCGCAGCAAGCAAAACACAGACTCACATCCATACATAAATGCAATAGATACCA 240
consensus_8870#1 ------------------------------------------------------------
consensus_8870#0 GACTCCAAGTGTATATTACCATGGGAACTCGGTAAACTTCATAGCAAATTATTCCAATAC 300
consensus_8870#1 -----------------------------------------CAACCAAATATTCCAA-GC 18
* * ** ******** *
consensus_8870#0 TCATCGGAAGCGTCGGTACCATGTGGGATCTATCTAGATCTCAATGGTGTCGTTCCTGGT 360
consensus_8870#1 TCATTGGA-GCGTTGTAA--ATTTTGGCCTAATT---GTCGCAATGGTA--GTTCCTG-- 68
**** *** **** * * ** * ** ** ** ******* *******
consensus_8870#0 CCGGTACGATTCACTGCCCAGAGTAAACCCATGCCACGTTGTTGTCCACGAATGTACTTT 420
consensus_8870#1 TCCGTAC-ATTCATCCCACAGAA-----CCATGCCA-GTTGTT-TCCACGA-TGTAAATT 119
* **** ***** * **** ******** ****** ******* **** **
consensus_8870#0 GGGGAGCAACATGTACATTTGTCCATCCACCATGTCGTTATGGGGCATTATGTACTCGTC 480
consensus_8870#1 TGG-AGCAACATGTACATTTGTCCACCCACCATGTCGTTATGGGGCATTATGTACTCGTC 178
** ********************* **********************************
consensus_8870#0 CTGACTGTGCTTTCACACACTCATCGAAAAAAGTATTGCCTGTGGTATCTGCCAACCCAG 540
consensus_8870#1 CTGACTGTGCTTTCACACACTCATCGAAAAAAGTATTGCCTGTGGTATCTGCCAACCCAG 238
************************************************************
consensus_8870#0 CTCAAATAGTATGCCGTTTCCAAAACAGATGTACAAATCCCCACTGTCAATTTTACCACC 600
consensus_8870#1 CTCAAATAGTATGCCGTTTCCAAAACAGATGTACAAATCCCCACTGTCAATTTTACCACC 298
************************************************************
consensus_8870#0 CACCTGTTGTTGTTCAAGCCCCTCCAATCATTGTTCGAAGTTCAGCTTCAACTGTCCCTG 660
consensus_8870#1 CACCTGTTGTTGTTCAAGCCCCTCCAATCATTGTTCGAAGTTCAGCTTCAACTGTCCCTG 358
************************************************************
consensus_8870#0 TTTTCAATAGCCAAATTCCATGTCGATATGGTTCTGGTTGCACTAATCGTACTAAATGTC 720
consensus_8870#1 TTTTCAATAGCCAAATTCCATGTCGATATGGTTCTGGTTGCACTAATCGTACTAAATGTC 418
************************************************************
consensus_8870#0 CTTTCCTTCATTCTGATTTACCCTCAGTTGATCAACTTAAATGGATTGCACCTTCCAAGA 780
consensus_8870#1 CTTTCCTTCATTCTGATTTACCCTCAGTTGATCAACTTAAA------------------- 459
*****************************************
consensus_8870#0 AACAACAATCATCTAATCCAATTTCCACAAAGGCAAACTCTACATAGAAAGCAGTTAAGT 840
consensus_8870#1 ------------------------------------------------------------
consensus_8870#0 CTGTAACCACACTTAATGAATAATGGGTTAGTTGTTATTAATGTTATGGACTAAAGTTTT 900
consensus_8870#1 ------------------------------------------------------------
consensus_8870#0 TTTAAAGACTATTAGTTAACAATATTATGTTTTGTCATGCATTTTTGCTGTTTATTTTTT 960
consensus_8870#1 ------------------------------------------------------------
consensus_8870#0 CAATTTTAATAATAAATAATTG 982
consensus_8870#1 ----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||