cluster # 8871

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Schistosoma mansoni
cluster # 8871 cluster # 8871 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8871#0 length = 638 sequences # 3

consensus_8871#1 length = 608 sequences # 3
consensus_8871#2 length = 247 sequences # 1

consensusID : consensus_8871#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 638
fasta sequence

                              [TAGTACTTTATTCAGATTTATTCCTAAGTACACAAACATATATATACACTCAAAAATAAATTTACGAAA---TATCTGATTCCACATTTAATTTACATACATATATGAAAGGCTCACAAACACAGAGAGAAACAAAATTTCAAATTCAATTGAGCATAAAGCTGGAAATGCAAAATACTAAGTGAAAAACTAAAAAAAAAATTGATGGTAGAGTAAAAGACAGAAATAAAAGAAAATATAATAGAATCTAGTTAGGTAATACATCCAGATGATATTGAATTGGTAGGGCTACTATTACTATCACCAACACCTATAGTACTATTATTAACTATTGTAGAAGTATTATCAGTAGCTGTTGATGTACTTGAAGCAACTTTAGCGTCTAAATAGAAAAGAATGTAGGCTGTATAAGAAGATTTCGAGGTTTCCGTAGACGAACCAAAAAAGTCTTCAATATTGGTGCGATGGATTTTTTCAACTAGTTCGTCATCAAACAAAAACCATAGTTCATGAGACTTCACAAGTGTTACATAATGTCCACGATTTGGTCCAGAGCCTGAGTGGACAACAACAGCCATAAGATTATATAGACGATCATCATTAGATGAGTCACTAGACATATTGAATAGTCTTAATTCCAT]

[+] EMBL CD077114             [TAGTACTTTATTCAGATTTATTCCTAAGTACACAAACATATATATACACTCAAAAATAAATTTACGAAA   TATCTGATTCCACATTTAATTTACATACATATATGAAAGGCTCACAAACACAGAGAGAAACAAAATTTCAAATTCAATTGAGCATAAAGCTGGAAATGCAAAATACTAAGTGAAAAACTAAAAAAAAAATTGATGGTAGAGTAAAAGACAGAAATAAAAGAAAATATAATAGAATCTAGTTAGGTAATACATCCAGATGATATTGAATTGGTAGGGCTACTATTACTATCACCAACACCTATAGTACTATTATTAACTATTGTAGAAGTATTATCAGTAGCTGTTGATGTACTTGAAGCAACTTTAGCGTCTAAATAGAAAAGAATGTAGGCTGTATAAAAAGATTTCGAGGTTTCCGTAGACGAACCAAAAAAGTCTTCAATATTGGTGCGATGGATTTTTTCAACTAGTTCGTCATCAAACAAAAACCATAGTTCATGAGACTTCACAAGTGTTACATAATGTCCACGATTTGGTCCAGAGCCTGAGTGGACAACAACAGCCATAA                                                             ]
[-] EMBL AI976728             [ AGTACTTTATTCAGATTTATTCCTAAGTACACANACATATATATACACTCAAAAATAAATTTACGAAATATTATCTGATTCCACATTTAATTTACATACATATATGAAAGGCTCACAAACACAGAGAGAAACAAAATTTCAAATTCAATTGAGCATAAAGCTGGAAATGCAAAATACTAAGTGAAAAACTAAAAAAAAAATTGATGGTAGAGTAAAAGACAGAAATAAAAGAAAATATAATAGAATCTAGTTAGGTAATACATCCAGATGATATTGAATTGGTAGGGCTACTATTACTATCACCAACACCTATAGTACTATTATTAACTATTGTAGAAGTATTATCAGTAGCTGTTGATGTACTTGAAGCAACTTTAGCGTCTAAATAGAAAAGAATGTAGGCTGTATAAGAAGATTTCGAGGTTTCCGTAGACGAACCAAAAAAGTCTTCAATATTGGTGCGATGGATTTTTTCAACTAGTTCGTCATCAAACAAAAACCATAGTTCATGAGACTTCACAAGTGTTACATAATGTCCACGATTTGGTCCAGAGCCTGAGTGGACAACAACAGCCATAAG                                                            ]
[+] EMBL CD194947             [                                                                                                                                                                                                                               AAATAAAAGAAAATATAATAGAATCTAGTTAGGTAATACATCCAGATGATATTGAATTGGTAGGGCTACTATTACTATCACCAACACCTATAGTACTATTATTAACTATTGTAGAAGTATTATCAGTAGCTGTTGATGTACTTGAAGCAACTTTAGCGTCTAAATAGAAAAGAATGTAGGCTGTATAAGAAGATTTCGAGGTTTCCGTAGACGAACCAAAAAAGTCTTCAATATTGGTGCGATGGATTTTTTCAACTAGTTCGTCATCAAACAAAAACCATAGTTCATGAGACTTCACAAGTGTTACATAATGTCCACGATTTGGTCCAGAGCCTGAGTGGACAACAACAGCCATAAGATTATATAGACGATCATCATTAGATGAGTCACTAGACATATTGAATAGTCTTAATTCCAT]




>consensus_8871#0
TAGTACTTTATTCAGATTTATTCCTAAGTACACAAACATATATATACACTCAAAAATAAA
TTTACGAAATATCTGATTCCACATTTAATTTACATACATATATGAAAGGCTCACAAACAC
AGAGAGAAACAAAATTTCAAATTCAATTGAGCATAAAGCTGGAAATGCAAAATACTAAGT
GAAAAACTAAAAAAAAAATTGATGGTAGAGTAAAAGACAGAAATAAAAGAAAATATAATA
GAATCTAGTTAGGTAATACATCCAGATGATATTGAATTGGTAGGGCTACTATTACTATCA
CCAACACCTATAGTACTATTATTAACTATTGTAGAAGTATTATCAGTAGCTGTTGATGTA
CTTGAAGCAACTTTAGCGTCTAAATAGAAAAGAATGTAGGCTGTATAAGAAGATTTCGAG
GTTTCCGTAGACGAACCAAAAAAGTCTTCAATATTGGTGCGATGGATTTTTTCAACTAGT
TCGTCATCAAACAAAAACCATAGTTCATGAGACTTCACAAGTGTTACATAATGTCCACGA
TTTGGTCCAGAGCCTGAGTGGACAACAACAGCCATAAGATTATATAGACGATCATCATTA
GATGAGTCACTAGACATATTGAATAGTCTTAATTCCAT

consensusID : consensus_8871#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 608
fasta sequence

                              [CGTATCGGTGTTCATGAAGCAGTATTACAAGATATTGATCTGGCTATTAAATATAATTTCCCTAAGGATCGTCGTCCACGTCTATTCATACGTCGTTCACAAAGTCTTATTTCGCTGAAACGCTTTAAAGAGGCATTAATTGAATTCAATAACTGTATGGAATATATGAAATCTGAAAATTTAACTATTCCAAACAATTTAAATGAAGCGATACAAAAGGGAATAAAAGACTGTTCAACTATGAAAGATGAATTATTGATTGATGATTCAGTTATACCATACTTTGTACATGAGGCGAAATCGTTAATAATGAAGCATGGAAACACTCAAAAGATTATTATAAAGAATTGTAATAATTCTAATAATGGCAGTAATATTACAGACCATAATTTACATCCAAGCATTCTTCGCTCTCTTTATTTACAAGATCCACCAGCAGTGAGGTTAAATTATAATGATGAATTTGGTTGGCATATTGTAGCGACAAAAAATATTCAGCCAGGTGAACTTCTCATACTGGATAAACCATATTCTTGTAGACTTCATTACAGTAGATTACTACTCAATTGTTATCGTTGCTCTAACGATGTATCAATCCTATACCTTGC]

[+] EMBL CD091994             [CGTATCGGTGTTCATGAAGCAGTATTACAAGATATTGATCTGGCTATTAAATATAATTTCCCTAAGGATCGTCGTCCACGTCTATTCATACGTCGTTCACAAAGTCTTATTTCGCTGAAACGCTTTAAAGAGGCATTAATTGAATTCAATAACTGTATGGAATATATGAGATCTGAAAATTTAACTATTCCAAACAATTTAAATGAAGCGATACAAAAGGGAATAAAAGACTGTTCAACTATGAAAGATGAATTATTGATTGATGATTCAGTTATACCATACTTTGTACATGAGGCGAAATCGTTAATAATGAAGCATGGAAACACTCAAAAGATTATTATAAAGAATTGTAATAATTCTAATAATGGCAGTAATATTACAGACCATAATTTACATCCAAGCATTCTTCGCCCTCTTTATTTACAAGATCCACCAGCAGTGAGGTTAAATTATAATGATGAATTTGGTTGGCATATTGTAGCGACAAAAAATATTCAGCCAGGTGAACTTCTCATACTGGATAAACCATATTCTTGTAGACTTCATTACAGTAGATTACTACTCAATTGTTATCGTTGCTCTAACGATGTATCAATCCTATACCTTGC]
[+] EMBL CD091991             [CGTATCGGTGTTCATGAAGCAGTATTACAAGATATTGATCTGGCTATTAAATATAATTTCCCTAAAGATCGTCGTCCACGTCTATTCATACGTCGTTCACAAAGTCTTATTTCGCTGAAACGCTTTAAAGAGGCATTAATTGAATTCAATAACTGTATGGAATGTATGAAATCTGAAAATTTAACTATTCCAAACAATTTAAATGAAGCGATACAAAAGGGAATAAAAGACTGTTCAACTATGAAAGATGAATTATTGATTGATGATTCAGTTATACCATACTTTGTACATGAGGCGAAATCGTTAATAATGAAGCATGGAAACACTCAAAAGATTATTATAAAGAATTGTAATAATTCTAATAATGGCAGTAATATTACAGACCATAATTTACATCCAAGCATTCTTCGCTCTCTTTATTTACAAGATCCACCAGCAGTGAGGTTAAATTATAATGATGAATTTGGTTGGCATATTGTAGCGACAAAAAATATTCAGCCAGGTGAACTTCTCATACTGGATAAAC                                                                                  ]
[-] EMBL CD072643             [                                                                                                                                                              GGNATATATGAAATCTGAAAA TTAACTATTTCCAACAAATTAAATGAAGCGATACAAAAGGGAATAAAAGACTGTTCAACTATGAAAGATGAATTATTGATTGATGATTCAGTTATACCATACTTTGTACATGAGGCGAAATCGTTAATAATGAAGCATGGAAACACTCAAAAGATTATTATAAAGAATTGTAATAATTCTAATAATGGCAGTAATATTACAGACCATAATTTACATCCAAGCATTCTTCGCTCTCTTTATT                                                                                                                                                                                           ]




>consensus_8871#1
CGTATCGGTGTTCATGAAGCAGTATTACAAGATATTGATCTGGCTATTAAATATAATTTC
CCTAAGGATCGTCGTCCACGTCTATTCATACGTCGTTCACAAAGTCTTATTTCGCTGAAA
CGCTTTAAAGAGGCATTAATTGAATTCAATAACTGTATGGAATATATGAAATCTGAAAAT
TTAACTATTCCAAACAATTTAAATGAAGCGATACAAAAGGGAATAAAAGACTGTTCAACT
ATGAAAGATGAATTATTGATTGATGATTCAGTTATACCATACTTTGTACATGAGGCGAAA
TCGTTAATAATGAAGCATGGAAACACTCAAAAGATTATTATAAAGAATTGTAATAATTCT
AATAATGGCAGTAATATTACAGACCATAATTTACATCCAAGCATTCTTCGCTCTCTTTAT
TTACAAGATCCACCAGCAGTGAGGTTAAATTATAATGATGAATTTGGTTGGCATATTGTA
GCGACAAAAAATATTCAGCCAGGTGAACTTCTCATACTGGATAAACCATATTCTTGTAGA
CTTCATTACAGTAGATTACTACTCAATTGTTATCGTTGCTCTAACGATGTATCAATCCTA
TACCTTGC

consensusID : consensus_8871#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 247
fasta sequence

                              [GGCAAGGTATAGGATTGATACATCGTTTATAGCAACGATAACAATTGAGTAGTAATCTACTGTAATGAAGTCTACAAGAATATGGTTTATCCAGTATGAGAAGTTCACTTCAACTAGTTCGTCATCAAACAAAAACCATAGTTCATGAGACTTCACAAGTGTTACATAATGTCCACGATTTGGTCCAGAGCCTGAGTGGACAACAACAGCCATAAGATTATATAGACGATCATCATTAGATGAGTCA]

[+] EMBL CD179841             [GGCAAGGTATAGGATTGATACATCGTTTATAGCAACGATAACAATTGAGTAGTAATCTACTGTAATGAAGTCTACAAGAATATGGTTTATCCAGTATGAGAAGTTCACTTCAACTAGTTCGTCATCAAACAAAAACCATAGTTCATGAGACTTCACAAGTGTTACATAATGTCCACGATTTGGTCCAGAGCCTGAGTGGACAACAACAGCCATAAGATTATATAGACGATCATCATTAGATGAGTCA]




>consensus_8871#2
GGCAAGGTATAGGATTGATACATCGTTTATAGCAACGATAACAATTGAGTAGTAATCTAC
TGTAATGAAGTCTACAAGAATATGGTTTATCCAGTATGAGAAGTTCACTTCAACTAGTTC
GTCATCAAACAAAAACCATAGTTCATGAGACTTCACAAGTGTTACATAATGTCCACGATT
TGGTCCAGAGCCTGAGTGGACAACAACAGCCATAAGATTATATAGACGATCATCATTAGA
TGAGTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8871#0      TAGTACTTTATTCAGATTTATTCCTAAGTACACAAACATATATATACACTCAAAAATAAA 60
consensus_8871#2      ------------------------------------------------------------
consensus_8871#1      ---CGTATCGGTGTTCATGAAGCAGTATTACAAGATATTGATCTGGCTATTAAATATAAT 57
                                                                                  

consensus_8871#0      TTTACGAAATATCTGATTCCACATTTAATTTACATACATATATGAAAGGCTCACAAACAC 120
consensus_8871#2      ------------------------------------------------------------
consensus_8871#1      TTCCCTAAGGATCGTCGTCCACGTCTATTCATACGTCGTTCACAAAGTCTTATTTCGCTG 117
                                                                                  

consensus_8871#0      AGA-GAGAAACAAAATTTCAAATTCAATTGAGCATAAAGCTGGAAATGCAAAATACTAAG 179
consensus_8871#2      ------------------------------------------------------------
consensus_8871#1      AAACGCTTTAAAGAGGCATTAATTGAATTCAATAACTGTATGGAATATATGAAATCTGAA 177
                                                                                  

consensus_8871#0      TGAAAAACTAAAAAAAAAATTGATGGTAGAGTAAAAGACAGAAATAAAAGAAAATATAAT 239
consensus_8871#2      ------------------------------------------------------------
consensus_8871#1      AATTTAACTATTCCAAACAATTTAAATGAAGCGATACA---AAAGGGAATAAAAGACTGT 234
                                                                                  

consensus_8871#0      AGAATCTAGTTAGGTAATACATCCAGATGATATTGAATTGGTAGGGCTACTATTACTATC 299
consensus_8871#2      ------------------------------------------------------------
consensus_8871#1      TCAACTATGAAAGATGAATTATTGATTGATGATTCAGTTATACCATACTTTGTACATGAG 294
                                                                                  

consensus_8871#0      ACCAACACCTATAGTACTATTATTAACTATTGTAGAAGTATTATCAGTAGCTGTTGATGT 359
consensus_8871#2      ----------------------------------------------------GGCAAGGT 8
consensus_8871#1      GCGAAATCGTTAATAATGAAGCATGGAAACACTCAAAAGATTATTATAAAGAATTGTAAT 354
                                                                                 *

consensus_8871#0      ACTTGAAGCAACTTTAGCGTCTAAATAG-AAAAGAATGTAGGCTGTATAAGAAGA--TTT 416
consensus_8871#2      A--TAGGATTGATACATCGTTT--ATAG-CAACGATAACAA-TTGAGTAGTAATC--TAC 60
consensus_8871#1      AATTCTAATAATGGCAGTAATATTACAGACCATAATTTACATCCAAGCATTCTTCGCTCT 414
                      *  *           *        * **   *  *             *        *  

consensus_8871#0      CGAGGTTTCCGTAGACGAACCAAAAAAGTCTTCAATATTGGTGCGATGGATTT-TTTCAA 475
consensus_8871#2      TGTAAT----GAAGTCTA--CAAGAATATGGTTTAT-CCAGTATGAGAAGTTCACTTCAA 113
consensus_8871#1      CTTTATTTACAAGATCCA-CCAGCAGTGAGGTTAAA-TTATAATGATGAATTTGGTTGGC 472
                           *         * *  **  *      *  *         **    **   **   

consensus_8871#0      CTAGTTCGTCATCAAACAAAAACCATAGTTCATGAGACT-TCACAAGTGTTACATAATGT 534
consensus_8871#2      CTAGTTCGTCATCAAACAAAAACCATAGTTCATGAGACT-TCACAAGTGTTACATAATGT 172
consensus_8871#1      ATATTGTAGCGACAAAAAATATTCA-GCCAGGTGAACTTCTCATACTGGATAAACCATAT 531
                       ** *    *  **** ** *  **       ***   * *** *   * ** *  ** *

consensus_8871#0      CCACGATTTGGTCCAGAGCCTGAGTGGACAACAACAGCCATAAGATTATATAGACGAT-C 593
consensus_8871#2      CCACGATTTGGTCCAGAGCCTGAGTGGACAACAACAGCCATAAGATTATATAGACGAT-C 231
consensus_8871#1      TCTTG-TAGACTTCATTACAGTAGATTACTACTCAATTGTTATCGTTGCTCTAACGATGT 590
                       *  * *    * **   *   **   ** **   *    **   **      *****  

consensus_8871#0      ATCA-TTAGATGAGTCACTAGACATATTGAATAGTCTTAATTCCAT 638
consensus_8871#2      ATCA-TTAGATGAGTCA----------------------------- 247
consensus_8871#1      ATCAATCCTATACCTTGC---------------------------- 608
                      **** *   **   *