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Schistosoma mansoni
cluster # 8875 cluster # 8875       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8875#0 length = 506 sequences # 6  
consensus_8875#1 length = 267 sequences # 1  

consensusID : consensus_8875#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 506
fasta sequence
                              [GGTCCGGAGCTGAGCAAACAAAAGTCATTAGACAA-ACGCATTAAAGCTGTAGCGGTGGTATTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTTTCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAGAGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACAATTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAATCAACGGTAATTGTGATTTAATTGAATCCACTGCCTGCTGGAGTTGACTCACATATCCACTCAGTTCTTGTCCAACGCTCATTGGAACAGCGTCTTGCATATGGGTCCTCCCAATTTTGATCACATTCATAAATTCATGCATCTTAATTTTGAGTACGTTTATGAGGTGATTCAAAGACGGCAGAACCTTCCATGCAGTTTCCATTGCAATACTCAGATT]

[-] EMBL CD131219             [GGTCCGGAGCTGAGCAAACAAAAGTCATTAGACAA ACGCATTAAAGCTGTGGCGGTGGTATTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTTTCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAGAGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACAATTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAATCAACGGTAATTGTGATTTAATTGAATCCACTGCCTGCTGGAGTTGACTC                                                                                                                                                                          ]
[-] EMBL CD184864             [GGTCCGGAGCTGAGCAAACAAAAGTCATTAGACAA ACGCATTAAAGCTGTAGCGGTGGTATTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTTTCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAGAGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACAATTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAATCAACGGTAATTGTGATTTAATTGAATCCACTGCCTGCTGGAGTTGACTC                                                                                                                                                                          ]
[+] EMBL CD184901             [                       GTCATTAGACAATACGCATTAAAGCTGTAGCGGTGGTATTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTTTCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAGAGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACAATTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAATCAACGGTAATTGTGATTTAATTGAATCCACTGCCTGCTGGAGTTGACTCACATATCCACTCAGTTCTTGTCCAACGCTCATTGGAACAGCGTCTTGCATATGGGTCCTCCCAATTTTGATCACATTCATAAATTCATGCATCTTAATTTTGAGTACGTTTATGAGGTGATTCAAAGACGGCAGAACCTTCCATGCAGTTTCCATTGCAATACTCAGATT]
[-] EMBL CD184772             [                        TCATTAGACAA ACGCATTAAAGCTGTAGCGGTGGTATTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTTTCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAGAGACGATCAGTTAACTGTGTTGAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACAATTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAATCAACGGTAATTGTGATTTAATTGAATCCACTGCCTGCTGGAGTTGACTC                                                                                                                                                                          ]
[-] EMBL CD131199             [                        TCATTAGACAA ACGCATTAAAGCTGTAGCGGTGGTATTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTTTCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAGAGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACAATTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAATCAACGGTAATTGTGATTTAATTGAATTCACTGCCTGCTGGAGTTGACTC                                                                                                                                                                          ]
[-] EMBL CD184908             [                        TCATTAGACAA ACGCATTAAAGCTGTAGCGGTGGTATTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTTTCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAGAGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACAATTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAATCAACGGTAATTGTGATTTAATTGAATCCACTGCCTGCTGGAGTTGACTC                                                                                                                                                                          ]


>consensus_8875#0 GGTCCGGAGCTGAGCAAACAAAAGTCATTAGACAAACGCATTAAAGCTGTAGCGGTGGTA TTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTT TCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAG AGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACAA TTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAATCAACGGTAATTGT GATTTAATTGAATCCACTGCCTGCTGGAGTTGACTCACATATCCACTCAGTTCTTGTCCA ACGCTCATTGGAACAGCGTCTTGCATATGGGTCCTCCCAATTTTGATCACATTCATAAAT TCATGCATCTTAATTTTGAGTACGTTTATGAGGTGATTCAAAGACGGCAGAACCTTCCAT GCAGTTTCCATTGCAATACTCAGATT



consensusID : consensus_8875#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 267
fasta sequence
                              [GTGGTATTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTTTCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAGAGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACATTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAACAACGGTAATTGTGATTTAATTGAATGCGTGTGAAG]

[-] EMBL CD064079             [GTGGTATTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTTTCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAGAGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACATTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAACAACGGTAATTGTGATTTAATTGAATGCGTGTGAAG]


>consensus_8875#1 GTGGTATTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAAT TTATTTTCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTT CTGTAGAGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTA GAACATTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAACAACGGTAA TTGTGATTTAATTGAATGCGTGTGAAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8875#0      GGTCCGGAGCTGAGCAAACAAAAGTCATTAGACAAACGCATTAAAGCTGTAGCGGTGGTA 60
consensus_8875#1      ------------------------------------------------------GTGGTA 6
                                                                            ******

consensus_8875#0      TTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTT 120
consensus_8875#1      TTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTT 66
                      ************************************************************

consensus_8875#0      TCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAG 180
consensus_8875#1      TCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAG 126
                      ************************************************************

consensus_8875#0      AGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACAA 240
consensus_8875#1      AGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACA- 185
                      *********************************************************** 

consensus_8875#0      TTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAATCAACGGTAATTGT 300
consensus_8875#1      TTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAA-CAACGGTAATTGT 244
                      ********************************************** *************

consensus_8875#0      GATTTAATTGAATCCACTGCCTGCTGGAGTTGACTCACATATCCACTCAGTTCTTGTCCA 360
consensus_8875#1      GATTTAATTGAAT-----GCGTG-TGAAG------------------------------- 267
                      *************     ** ** ** **                               

consensus_8875#0      ACGCTCATTGGAACAGCGTCTTGCATATGGGTCCTCCCAATTTTGATCACATTCATAAAT 420
consensus_8875#1      ------------------------------------------------------------
                                                                                  

consensus_8875#0      TCATGCATCTTAATTTTGAGTACGTTTATGAGGTGATTCAAAGACGGCAGAACCTTCCAT 480
consensus_8875#1      ------------------------------------------------------------
                                                                                  

consensus_8875#0      GCAGTTTCCATTGCAATACTCAGATT 506
consensus_8875#1      --------------------------
                                                




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)