These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8875#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 506 fasta sequence [GGTCCGGAGCTGAGCAAACAAAAGTCATTAGACAA-ACGCATTAAAGCTGTAGCGGTGGTATTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTTTCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAGAGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACAATTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAATCAACGGTAATTGTGATTTAATTGAATCCACTGCCTGCTGGAGTTGACTCACATATCCACTCAGTTCTTGTCCAACGCTCATTGGAACAGCGTCTTGCATATGGGTCCTCCCAATTTTGATCACATTCATAAATTCATGCATCTTAATTTTGAGTACGTTTATGAGGTGATTCAAAGACGGCAGAACCTTCCATGCAGTTTCCATTGCAATACTCAGATT] [-] EMBL CD131219 [GGTCCGGAGCTGAGCAAACAAAAGTCATTAGACAA ACGCATTAAAGCTGTGGCGGTGGTATTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTTTCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAGAGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACAATTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAATCAACGGTAATTGTGATTTAATTGAATCCACTGCCTGCTGGAGTTGACTC ] [-] EMBL CD184864 [GGTCCGGAGCTGAGCAAACAAAAGTCATTAGACAA ACGCATTAAAGCTGTAGCGGTGGTATTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTTTCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAGAGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACAATTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAATCAACGGTAATTGTGATTTAATTGAATCCACTGCCTGCTGGAGTTGACTC ] [+] EMBL CD184901 [ GTCATTAGACAATACGCATTAAAGCTGTAGCGGTGGTATTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTTTCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAGAGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACAATTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAATCAACGGTAATTGTGATTTAATTGAATCCACTGCCTGCTGGAGTTGACTCACATATCCACTCAGTTCTTGTCCAACGCTCATTGGAACAGCGTCTTGCATATGGGTCCTCCCAATTTTGATCACATTCATAAATTCATGCATCTTAATTTTGAGTACGTTTATGAGGTGATTCAAAGACGGCAGAACCTTCCATGCAGTTTCCATTGCAATACTCAGATT] [-] EMBL CD184772 [ TCATTAGACAA ACGCATTAAAGCTGTAGCGGTGGTATTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTTTCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAGAGACGATCAGTTAACTGTGTTGAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACAATTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAATCAACGGTAATTGTGATTTAATTGAATCCACTGCCTGCTGGAGTTGACTC ] [-] EMBL CD131199 [ TCATTAGACAA ACGCATTAAAGCTGTAGCGGTGGTATTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTTTCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAGAGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACAATTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAATCAACGGTAATTGTGATTTAATTGAATTCACTGCCTGCTGGAGTTGACTC ] [-] EMBL CD184908 [ TCATTAGACAA ACGCATTAAAGCTGTAGCGGTGGTATTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTTTCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAGAGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACAATTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAATCAACGGTAATTGTGATTTAATTGAATCCACTGCCTGCTGGAGTTGACTC ] consensusID : consensus_8875#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence [GTGGTATTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTTTCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAGAGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACATTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAACAACGGTAATTGTGATTTAATTGAATGCGTGTGAAG] [-] EMBL CD064079 [GTGGTATTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTTTCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAGAGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACATTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAACAACGGTAATTGTGATTTAATTGAATGCGTGTGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8875#0 GGTCCGGAGCTGAGCAAACAAAAGTCATTAGACAAACGCATTAAAGCTGTAGCGGTGGTA 60 consensus_8875#1 ------------------------------------------------------GTGGTA 6 ****** consensus_8875#0 TTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTT 120 consensus_8875#1 TTAAAACAACCACTTAACTGTAATAAGGCGTCATGGCCTGCAAGAGCTGCAAATTTATTT 66 ************************************************************ consensus_8875#0 TCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAG 180 consensus_8875#1 TCCGCTGGTTTGAAAATGAGATCTACCACAGGCGTAGATTCTTTGTACATAGTTCTGTAG 126 ************************************************************ consensus_8875#0 AGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACAA 240 consensus_8875#1 AGACGATCAGTTAACTGTGTTAAGCTTACACAGAGTTCCTCATCGAAACCTTTAGAACA- 185 *********************************************************** consensus_8875#0 TTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAATCAACGGTAATTGT 300 consensus_8875#1 TTTAACCCAGTTCCTACAGCAGTTCCACCAACAGCTAAATGACAAA-CAACGGTAATTGT 244 ********************************************** ************* consensus_8875#0 GATTTAATTGAATCCACTGCCTGCTGGAGTTGACTCACATATCCACTCAGTTCTTGTCCA 360 consensus_8875#1 GATTTAATTGAAT-----GCGTG-TGAAG------------------------------- 267 ************* ** ** ** ** consensus_8875#0 ACGCTCATTGGAACAGCGTCTTGCATATGGGTCCTCCCAATTTTGATCACATTCATAAAT 420 consensus_8875#1 ------------------------------------------------------------ consensus_8875#0 TCATGCATCTTAATTTTGAGTACGTTTATGAGGTGATTCAAAGACGGCAGAACCTTCCAT 480 consensus_8875#1 ------------------------------------------------------------ consensus_8875#0 GCAGTTTCCATTGCAATACTCAGATT 506 consensus_8875#1 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||