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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8878#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 850 fasta sequence
[AATTTTTACCTTGATAACAATAATAGCAATAACAATATAAAACATAATGAGATTACTGCAAATCACAAATTAGCCTTGGAGGACTCACAACAGAATAACATTGGATATTTATCATCTAAACTTATGAAAAGTAATGCCAAGAGACCATCGAAATTATCCAATGCAACGAATACTTCAGAATTGACTCCTGTTGATTGTTCACCTACATCATCTCATTCTGGGAATGATTTTCTCCTAGAATCCAATATTACAAGAAACCACGTCGAACATACCGACCACTGTCATGATGATAATAATAATGATGATCATAATGCTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTAAATCAACCATCAACATCTTCAAGTTCTTCATTTCAATCTCAATCCTCCTATTGTCATCTTTTTATGTATCAATCTATTGGAACATTAATTTTAGCTTGTTCATCACCATTCGGTGTTCTTGTTGGTTGTGGTTTAATGCAACAAAAACAATCAGCAGTATTAACAATGTCAACTGCTGTACTTCAAGGTTTAGCTTGTGGAACATTTTTCTTCGTCGTATTCTGTGAATTATTACCAGTTGAATTTAAAGAAAGTGTCAAAGATAGGATGGGAAAAATTTTTTTCTTATTACTTGGATTTGCAGTAGTTG]
[+] EMBL CD118562 [AATTTTTACCTTGATAACAATAATAGCAATAACAATATAAAACATAATGAGATTACTGCAAATCACAAATTAGCCTTGGAGGACTCACAACAGAATAACATTGGATATTTATCATCTAAACTTATGAAAAGTAATGCCAAGAGACCATCGAAATTATCCAATGCAACGAATACTTCAGAATTGACTCCTGTTGATTGTTCACCTACATCATCTCATTCTGGGAATGATTTTCTCCTAGAATCCAATATTACAAGAAACCACGTCGAACATACCGACCACTGTCATGATGATAATAATAATGATGATCATAATGCTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAAC ]
[-] EMBL CD095809 [ AATAACATTGGATATTTATCATCTAAACTTATGAAAAGTAATGCCAAGAGACCATCGAAATTATCCGATGCAACGAATACTTCAGAATTGACTCCTGTTGATTGTTCACTTACATCATCTCATTCTGGGAATGATTTTCTCCTAGAATCCAATATTACAAGAAACCACGTCGAACATACCGACCACTGTCATGATGATAATAATAATGATGATCATAATGCTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCCTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTAAATCAACCATCAACATCTTCAAGTTCTTCATTT ]
[+] EMBL AW017309 [ CTCATTCTGGGAATGATTTTCTCCTAGAATCCAATATTACAAGAAACCACGTCGAACATACCGACCACTGTCATGATGATAATAATAATGATGATCATAATGCTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTAAATCAACCATCAACATCTTCAAGTTCTTCATTTCAATCTCAATCCTCCTATTGTCATCTTTTTATGTATCAATCTATTGGAACATTAATTTTAGCTTGTTCATCACCATTCGGTGTTCTTGTTGGTTGTGGTTTAATGCAACAAAAACAATCAGCAGTATTAACAATGTCAACTGCTGTACTTCAAGGTTTAGCTTGTGGAACATTTTTCTTCGTCGTATTCTGTGAATTATTACCAGTTGAATTTAAAGAAAGTGTCAAAGATAGGATGGGAAAAATTTTTTTCTTATTACTTGGATTTGCAGTAGTTG]
[-] EMBL CD096059 [ TGATAATAATAATGATGATCATAATGTTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCTTTTGGATCAGTGTTGCGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTAAATCAACCATCAACATCTTCAAGTTCTTCATTT ]
consensusID : consensus_8878#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 480 fasta sequence
[AATAACATTGGATATTTATCATCTAAACTTATGAAAAGTAATGCCAAGAGACATGATACATCAATTCAATGNCGGAGACTCACAACTAGACGTTGCNCCGTGAGATCCACCTAGTCCTTATGCTTCAATAGAGTATTTCTTATATCACAAACTATCAAAAAGACACCGTGGACATANNCGCCCTTTTTTCNTNNTNATTATANNAAAAATGATCANAANAGTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTAAATCAACCATCAACATCTTCAAGTTCTTCATTT]
[-] EMBL CD096061 [AATAACATTGGATATTTATCATCTAAACTTATGAAAAGTAATGCCAAGAGACATGATACATCAATTCAATGNCGGAGACTCACAACTAGACGTTGCNCCGTGAGATCCACCTAGTCCTTATGCTTCAATAGAGTATTTCTTATATCACAAACTATCAAAAAGACACCGTGGACATANNCGCCCTTTTTTCNTNNTNATTATANNAAAAATGATCANAANAGTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAGTTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTAAATCAACCATCAACATCTTCAAGTTCTTCATTT]
[+] EMBL CD152768 [ TTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAATATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCACTGCTATTTTATTACATAAAATAATCA ]
[-] EMBL CD149610 [ gTGGCCTTCAACCTACAACACAAAGTACTCTTGCTTTATTCAATGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAATTTATATCAACCATTCACCTCCTCAAGGTTTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8878#0 AATTTTTACCTTGATAACAATAATAGCAATAACAATATAAAACATAATGAGATTACTGCA 60
consensus_8878#1 ------------------------------------------------------------
consensus_8878#0 AATCACAAATTAGCCTTGGAGGACTCACAACAGAATAACATTGGATATTTATCATCTAAA 120
consensus_8878#1 ---------------------------------AATAACATTGGATATTTATCATCTAAA 27
***************************
consensus_8878#0 CTTATGAAAAGTAATGCCAAGAGACCATCGAAATTA-TCCAATGCAACGAATACTTCAGA 179
consensus_8878#1 CTTATGAAAAGTAATGCCAAGAGACATGATACATCAATTCAATG--NCGGAGACT-CACA 84
************************* * ** * * ***** ** * *** ** *
consensus_8878#0 ATTGACTCCTGTTGATTGTTCACCTACATCATC-TCATTCTGGGAATGATTTTCTCCTAG 238
consensus_8878#1 ACTAGACGTTGCNCCGTGAG-ATCCACCTAGTCCTTATGCTTCAATAGAGTATTTCTTAT 143
* * ** ** * * ** * ** * ** ** * ** * * ** **
consensus_8878#0 AATCCAATATTACAAGAAACCACGTCGAACATACCGACCACTGT--CATGATGATAATAA 296
consensus_8878#1 ATCACAAACTATCAAAAAGACACCGTGGACATANNCGCCCTTTTTTCNTNNTNATTATAN 203
* *** * *** ** *** * ***** ** * * * * * ** ***
consensus_8878#0 TAATGATGATCATAATGCTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAG 356
consensus_8878#1 NAAAAATGATCANAANAGTCATCATCATTCTCATACTCATGATATCAAATTTGATGCTAG 263
** ******* ** ******************************************
consensus_8878#0 TTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAAT 416
consensus_8878#1 TTCTTTTGGATCAGTGTTACGTATTATTCTACTTTTATGCGCTATGTCTGTACATTCAAT 323
************************************************************
consensus_8878#0 ATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCAC 476
consensus_8878#1 ATTTGAAGGTTTAGCAGTTGGCCTTCAACCTACAACACAACGTACTCTTGCTTTATTCAC 383
************************************************************
consensus_8878#0 TGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAA 536
consensus_8878#1 TGCTATTTTATTACATAAAATTATCATAGCTATTGGTATCGGTGTAAATTTAGCTACAAA 443
************************************************************
consensus_8878#0 TTTAAATCAACCATCAACATCTTCAAGTTCTTCATTTCAATCTCAATCCTCCTATTGTCA 596
consensus_8878#1 TTTAAATCAACCATCAACATCTTCAAGTTCTTCATTT----------------------- 480
*************************************
consensus_8878#0 TCTTTTTATGTATCAATCTATTGGAACATTAATTTTAGCTTGTTCATCACCATTCGGTGT 656
consensus_8878#1 ------------------------------------------------------------
consensus_8878#0 TCTTGTTGGTTGTGGTTTAATGCAACAAAAACAATCAGCAGTATTAACAATGTCAACTGC 716
consensus_8878#1 ------------------------------------------------------------
consensus_8878#0 TGTACTTCAAGGTTTAGCTTGTGGAACATTTTTCTTCGTCGTATTCTGTGAATTATTACC 776
consensus_8878#1 ------------------------------------------------------------
consensus_8878#0 AGTTGAATTTAAAGAAAGTGTCAAAGATAGGATGGGAAAAATTTTTTTCTTATTACTTGG 836
consensus_8878#1 ------------------------------------------------------------
consensus_8878#0 ATTTGCAGTAGTTG 850
consensus_8878#1 --------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||