These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8879#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1016 fasta sequence [AGTAAATTCTTNTACTGCTACATAATCAACTGATTCGGTGGATACTGCTTGTCTGTGTTAGGATTGGTGACACTATCCGACTGACTGGATTGAATTACGTGAAGTGAAGTAATTGAATTAGAACATGGTACAATGTTTACTAACCTTACGTAAACTAGACTGTACAAATAGTGAAAATGAACAGAACACTCTTTTCATGCTACTTAATGTCTTGCCTTTATCGTTTTATTTTGTTTGTTTTTTTTAAATATCCAGCCGTGGAAATCCTCTATTTCTTGTGGAATCTGAATATAAACGTATTAACGAATTATGGATTAGTCATCAATTGGCCTCTAGTACATCATCGGATTTGATTACACCTTCAAATTTGCAATTTGGTCTATATTAAAAATAATCACAACACATAAGAAGAAGTGTCGGTCAACAATCTACTTTTTTTCAAATCATCGTCATCATCACCGTCGACAGTAGAAATATTACTTCATTATCTTGTCATTTGTCATTATGTGAATGCTTTCATCACTCAGTACTGTTGGATCGGCATGTCAACGGTGTTAGCTAGCCCCATCCTCCCTCGACCCCCCCTATCTTATCAAGTCATTCAACTATCTTTCTTGAATTTATATTTATACATAAATATACACATAGAGTCTTGTTATATGCTATTTTTTTGGAATTCATGAAGTGACGATCTCTCTCATACCATACAGGTTGTTTGTTATCTGTAAAATTTGAAAGGACTCTTTTTTATTTTTCCGTTTCATCTAGTTAAAATAAAAGTCTCTGTTGTGCGCCTACAAATGCGCTTATCTTGATGGAACGAACAGTGATTAATTTTTTTTTAAAATTCTTCATTCTTCCTTTCCCCTATTTATCGGTTACTCTTTTTTTGCATGGTTTTTCTAATTAAGTAGTGTATATGTGTGTTTATGTGTTCCGCAGATGATGTGTGTAAAGTCTAGGATCCATTAGCTCTATTCCCCTCTATTCTTCTTCTCTATATTCATCATTTCATC] [-] EMBL CD178716 [AGTAAATTCTTNTACTGCTACATAATCAACTGATTCGGTGGATACTGCTTGTCTGTGTTAGGATTGGTGACACTATCCGACTGACTGGATTGAATTACGTGAAGTGAAGTAATTGAATTAGAACATGGTACAATGTTTACTAACCTTACGTAAACTAGACTGTACAAATAGTGAAAATGAACAGAACACTCTTTTCATGCTACTTAATGTCTTGCCTTTATCGTTTTATTTTGTTTGTTTTTTTTAAATATCCAGCCGTGGAAATCCTCTATTTCTTGTGGAATCTGAATATAAACGTATTAACGAATTATGGATTAGTCATCAATTGGCCTCTAGTACATCATCGGATTTGATTACACCTTCAAATTTGCAATTTGGTCTATATTAAAAATAATCACAACACATAAGAAGAAGTGTCGGTCAACAATCTACTTTTTTTCAAATCATCGTCATCATCACCGTCGACAGTAGAAATATTACTTCATTATCTTGTCATTTGTCATTATGTGAATGCTTTCATCACTCAGTACTGTTGGATCGGCATGTCAACGGT ] [+] EMBL BG931067 [ gtCCTCTAGTACATCATCGGATTTGATTACACCTTCAAATTTGCAATTTGGTCTATATTAAAAATAATCACAACACATAAGAAGAAGTGTCGGTCAACAATCTACTTTTTTTCAAATCATCGTCATCATCACCGTCGACAGTAGAAATATTACTTCATTATCTTGTCATTTGTCATTATGTGAATGCTTTCATCACTCAGTACTGTTGGATCGGCATGTCAACGGTGTTAGCTAGCCCCATCCTCCCTCGA ] [+] EMBL CD080460 [ TGCAATTTGGTCTATATTAAAAATAATCACAACACATAAGAAGAAGTGTCGGTCAACAATCTACTTTTTTTCAAATCATCGTCATCATCACCGTCGACAGTAGAAATATTACTTCATTATCTTGTCATTTGTCATTATGTGAATGCTTTCATCACTCAGTACTGTTGGATCGGCATGTCAACGGTGTTAGCTAGCCCCATCCTCCCTCTACCCCCCCTATCTTATCAAGTCATTCAACTATCTTTCTTGAATTTATATTTATACATAAATATACACATAGAGTCTTGTTATATGCTATTTTTTTGGAATTCATGAAGTGACGATCTCTCTCATACCATACAGGTTGTTTGTTATCTGTAAAATTTGAAAGGACTCTTTTTTATTTTTCCGTTTCATCTAGTTAAAATAAAAGTCTCTGTTGTGCGCCTACAAATGCGCTTATCTTGATGGAACGAACAGTGATTAATTTTTTTTTAAAATTCTTCATTCTTCCTTTCCCCTATTTATCGGTTACTCTTTTTTTGCATGGTTTTTCTAATTAAGTAGTGTATATGTGTGTTTATGTGTTCCGCAGATGATGTGTGTAAAGTCTAGGATCCATTAGCTCTATTCCCCTCTATTCTTCTTCTCTATATTCATCATTTCATC] consensusID : consensus_8879#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 704 fasta sequence [TTATGTATTTAACAAAATATGTATATGTGTACTATTTCGACATAAAAAAAGGAGGGGGGGGGGAAACAT-GAAAAATTACAAATAATAAGTGAAGAGAAAGAGAGAAGTATAAGAAAGAAACACCAATGGGTAGATGGATGAAGGAGAGAATTCAGTGAGCATATTTCCAAACTAAACTTTTAAGGTAGATGAAATAAGAAAGAACAAGGGAGAGAGAGAAAAAGACAATCGAAACGAGTAGGTTCGAAAGTGATTATTATTACTTTCCAACTAGTGTTTACACATACCCAACAAACAGATTAAAATTAGTTCAGTACAATTAAGTTTGATGTTCGTTAAGCGTATGCTTTGAATATGTCTATGGCAGATATTGAAAGAAGGTAGAGAAGGCGAAGATATCAAAAGAATACCTTACAGAAACGGATCTTACCAAACAAAAGATGTATACATGATGAAAAATAGAATGAAGAGATACAGAGAAATAGCTACTTTCTTCGCCTCTTTTTTTTCTTCAAGGGTAAATATTACACAACAATAGGATAAGTTGTACTGATAAAGGGGGGGGAGGAGTTNNTAAGATGAGAAATAAATAAATAAACTAGCACACAATCAAACAAGTTTACAAGATGAAATGATGAATATAGACCAAATTGCAAATTTGAAGGTGTAATCAAATCCGATGATGTACTAGAGGCCAATTGATG] [+] EMBL CD074371 [TTATGTATTTAACAAAATATGTATATGTGTACTATTTCGACATAAAAAAAGGAGGGGGGGGGGAAACAT GAAAAATTACAAATAATAAGTGAAGAGAAAGAGAGAAGTATAAGAAAGAAACACCAATGGGTAGATGGATGAAGGAGAGAATTCAGTGAGCATATTTCCAAACTAAACTTTTAAGGTAGATGAAATAAGAAAGAACAAGGGAGAGAGAGAAAAAGACAATCGAAACGAGTAGGTTCGAAAGTGATTATTATTACTTTCCAACTAGTGTTTACACATACCCAACAAACAGATTAAAATTAGTTCAGTACAATTAAGTTTGATGTTCGTTAAGCGTATGCTTTGAATATGTCTATGGCAGATATTGAAAGAAGGTAGAGAAGGCGAAGATATCAAAAGAATACCTTACAGAAACGGATCTTACCAAACAAAAGATGTATACATGATGAAAAATAGAATGAAGAGATACAGAGAAATAGCTACTTTCTTCGCCTCTTTTTTTTCTTCAAGGGTAAATATTACACAACAATAGGATAAGTTGTACTGATAAAGGGGGGGGAGGAGTTNN ] [+] EMBL CD085446 [ GGGGGGGGNGAAACATNGAAAAATTACAAATAATAAGTGAAGAGAAAGAGAGAAGTATAAGAAAGAAACACCAATGGGTAGATGGATGAAGGAGAGAATTCAGTGAGCATATTTCCAAACTAAACTTTTAAGGTAGATGAAATAAGAAAGAACAAGGGAGAGAGAGAAAAAGACAATCGAAACGAGTAGGTTCGAAAGTGATTATTATTACTTTCCAACTAGTGTTTACACATACCCAACAAACAGATTAAAATTAGTTCAGTACAATTAAGTTTGATGTTCGTTAAGCGTATGCTTTGAATATGTCTATGGCAGATATTGAAAGAAGGTAGAGAAGGCGAAGATATCAAAAGAATACCTTACAGAAACGGATCTTACCAAACAAAAGATGTATACATGATGAAAAATAGAATGAAGAGATAC ] [+] EMBL CD085528 [ GGGGGGGGAAACAT GAAAAATTACAAATAATAAGTGAAGAGAAAGAGAGAAGTATAAGAAAGAAACACCAATGGGTAGATGGATGAAGGAGAGAATTCAGTGAGCATATTTCCAAACTAAACTTTTAAGGTAGATGAAATAAGAAAGAACAAGGGAGAGAGAGAAAAAGACAATCGAAACGAGTAGGTTCGAAAGTGATTATTATTACTTTCCAACTAGTGTTTACACATACCCAACAAACAGATTAAAATTAGTTCAGTACAATTAAGTTTGATGTTCGTTAAGCGTACGCTTTGAATATGTCTATGGCAGATATTGAAAGAAGGTAGAGAAGGCGAAGATATCAAAAGAATACCTTACAGAAACGGATCTTACCAAACAAAAGATGTATACATGATGAAAAATAAAATGAAGAGATAC ] [+] EMBL CD146112 [ AAAATTATTTCCGTACAATTAAGTTTGATGTTCGTTAAGCGTATGCTTTGAATATGTCTATGGCAGATATTGAAAGAAGGTAGAGAAGGCGAAGATATCAAAAGAATACCTTACAGAAACGGATCTTACCAAACAAAAGATGTATACATGATGAAAAATAGAATGAAGAGATACAGAGAAATAGCTACTTTCTTCGCCTCTTTTTTTTCTTCAAGGGTAAATATTACACAACAATAGGATAAGTTGTACTGATAAA GGGGGGGAGGAGTTAGTAAGATGAGAAATAAATAAATAAACTAGCACACAATCAAACAAGTTTACAAGATGAAATGATGAATATAGACCAAATTGCAAATTTGAAGGTGTAATCAAATCCGATGATGTACTAGAGGCCAATTGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8879#0 AGTAAATTCTTNTACTGCTACATAATCAACTGATTCGGTGGATACTGCTTGTCTGTGTTA 60 consensus_8879#1 ------------------------------------------------------------ consensus_8879#0 GGATTGGTGACACTATCCGACTGACTGGATTGAATTACGTGAAGTGAAGTAATTGAATTA 120 consensus_8879#1 ------------------------------------------------------------ consensus_8879#0 GAACATGGTACAATGTTTACTAACCTTACGTAAACTAGACTGTACAAATAGTGAAAATGA 180 consensus_8879#1 ------------------------------------------------------------ consensus_8879#0 ACAGAACACTCTTTTCATGCTACTTAATGTCTTGCCTTTAT-CGTTTTATTTTGTTTGTT 239 consensus_8879#1 --------------TTATG-TATTTAACAAAATATGTATATGTGTACTATTTCGACA--- 42 * *** ** **** * * *** ** ***** * consensus_8879#0 TTTTTTAAATATCCAGCCGTGGAAATCCTCTATTTCTTGTGGAATCTGAATATAAACGTA 299 consensus_8879#1 ---TAAAAAAAGGAGGGGGGGGGGAAACATGAAAAATTACAAATAATAAGTGAAGAGAAA 99 * *** * * * ** * * * ** * * * * * * * consensus_8879#0 TTAACGAAT-TATGGATTAGTCATCAATTGGCCTCTAG-TACATCATCGGATTTGATTAC 357 consensus_8879#1 GAGAGAAGTATAAGAAAGAAACACCAATGGGTAGATGGATGAAGGAGAGAATTCAGTGAG 159 * * * ** * * * ** **** ** * * * * * * *** * * consensus_8879#0 ACCTTCAAATTTGCAATTTGGTCTATATTAAAAATAATCACAACACATAAGAAGAAGTGT 417 consensus_8879#1 -----CATATTTCCAAACTAAACT---TTTAAGGTAGATGAAATAAGAAAGAACAAGGGA 211 ** **** *** * ** ** ** ** ** * ***** *** * consensus_8879#0 CGGTCAACAATCTACTTTTTTTCAAATCATCGTCATCATCACCGTCGACAGTAGAAATAT 477 consensus_8879#1 GAGAGAGAAAA------------AGACAATCGAAACGAGTAGGTTCGAAAGTG-----AT 254 * * ** * * **** * * * **** *** ** consensus_8879#0 TACTTCATTATCTTGTCATTTGTCATTATGTGAATGCTTTCATCACTCAGTACTGTTGGA 537 consensus_8879#1 TATT--ATTACTTTCCAACTAGTGTTTACACA-----------TACCCAACA--AACAGA 299 ** * **** ** * * ** *** ** ** * ** consensus_8879#0 TCGGCATGTCAACGGTGTTAGCTAGCCCCATCCTCCCTCGACCCCCCCTATCTTATCAAG 597 consensus_8879#1 TTAAAATTAGTTCAGTACAATTAAGTTTGATGTTCGTTAAGCGTATGC--TTTGAATATG 357 * ** * ** * ** ** ** * * * * * * * * consensus_8879#0 TCATTCAACTATCTTTCTTGAATTTATATTTATACATAAATATACACATAGAGTCTTGTT 657 consensus_8879#1 TCTATGGCAGATATTGAAAGAAGGTAGAGA-AGGCGAAGATATCAAAAGAATACCTTAC- 415 ** * ** ** *** ** * * * * **** * * * *** consensus_8879#0 ATATGCTATTTTTTTGGAATTCATGAAGTGACGATCTCTCTCATACCATACAGGTTGTTT 717 consensus_8879#1 AGAAACGGATCTTACCAAACAAAAGATGTA------TACATGATGAAAAATAGAATG--- 466 * * * * ** ** * ** ** * * ** * * ** ** consensus_8879#0 GTTATCTGTAAAATTTGAAAGGACTCTTTTTTATTTTTCCGTTTCATCTAGTTAAAATAA 777 consensus_8879#1 AAGAGATACAGA----GAAATAGCTACTTTCTTCGCCTCTTTTTTTTCT--TCAAGGGTA 520 * * * * **** ** *** * ** *** *** * ** * consensus_8879#0 AAGTCTCTGTTGTGCGCCTACAAATGCGCTTATCTTGATGGAACGAACAGTG-ATTAATT 836 consensus_8879#1 AA-----TATTACACAACAATAGGATAAGTTGTACTGATAAAGGGGGGGGAGGAGTTNNT 575 ** * ** * * * * ** * **** * * * * * * * consensus_8879#0 TTTTTTTAAAATTCTTCATTCTTCCTTTCCCCTATTTATCGGTTACTCTTTTTTTGCATG 896 consensus_8879#1 AAGATGAGAAATAAATAAATAAACTAGCACACAATCAAACAAGT-TTACAAGATGAAATG 634 * **** * * * * * * ** * * * * * *** consensus_8879#0 GTTTTTCTA-ATTAAGTAGTGTATATGTGTGTTTATGTGTTCCGCAGATGATGTGTGTAA 955 consensus_8879#1 ATGAATATAGACCAAATTGCAAATTTGAAGGTGTAATCAAATC--CGATGATGTAC-TAG 691 * * ** * ** * * ** ** ** ** * ******** ** consensus_8879#0 AGTCTAGGATCCATTAGCTCTATTCCCCTCTATTCTTCTTCTCTATATTCATCATTTCAT 1015 consensus_8879#1 AGGCCA--ATTGATG--------------------------------------------- 704 ** * * ** ** consensus_8879#0 C 1016 consensus_8879#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||