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Schistosoma mansoni
cluster # 8879 cluster # 8879       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8879#0 length = 1016 sequences # 3  
consensus_8879#1 length = 704 sequences # 4  

consensusID : consensus_8879#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1016
fasta sequence
                              [AGTAAATTCTTNTACTGCTACATAATCAACTGATTCGGTGGATACTGCTTGTCTGTGTTAGGATTGGTGACACTATCCGACTGACTGGATTGAATTACGTGAAGTGAAGTAATTGAATTAGAACATGGTACAATGTTTACTAACCTTACGTAAACTAGACTGTACAAATAGTGAAAATGAACAGAACACTCTTTTCATGCTACTTAATGTCTTGCCTTTATCGTTTTATTTTGTTTGTTTTTTTTAAATATCCAGCCGTGGAAATCCTCTATTTCTTGTGGAATCTGAATATAAACGTATTAACGAATTATGGATTAGTCATCAATTGGCCTCTAGTACATCATCGGATTTGATTACACCTTCAAATTTGCAATTTGGTCTATATTAAAAATAATCACAACACATAAGAAGAAGTGTCGGTCAACAATCTACTTTTTTTCAAATCATCGTCATCATCACCGTCGACAGTAGAAATATTACTTCATTATCTTGTCATTTGTCATTATGTGAATGCTTTCATCACTCAGTACTGTTGGATCGGCATGTCAACGGTGTTAGCTAGCCCCATCCTCCCTCGACCCCCCCTATCTTATCAAGTCATTCAACTATCTTTCTTGAATTTATATTTATACATAAATATACACATAGAGTCTTGTTATATGCTATTTTTTTGGAATTCATGAAGTGACGATCTCTCTCATACCATACAGGTTGTTTGTTATCTGTAAAATTTGAAAGGACTCTTTTTTATTTTTCCGTTTCATCTAGTTAAAATAAAAGTCTCTGTTGTGCGCCTACAAATGCGCTTATCTTGATGGAACGAACAGTGATTAATTTTTTTTTAAAATTCTTCATTCTTCCTTTCCCCTATTTATCGGTTACTCTTTTTTTGCATGGTTTTTCTAATTAAGTAGTGTATATGTGTGTTTATGTGTTCCGCAGATGATGTGTGTAAAGTCTAGGATCCATTAGCTCTATTCCCCTCTATTCTTCTTCTCTATATTCATCATTTCATC]

[-] EMBL CD178716             [AGTAAATTCTTNTACTGCTACATAATCAACTGATTCGGTGGATACTGCTTGTCTGTGTTAGGATTGGTGACACTATCCGACTGACTGGATTGAATTACGTGAAGTGAAGTAATTGAATTAGAACATGGTACAATGTTTACTAACCTTACGTAAACTAGACTGTACAAATAGTGAAAATGAACAGAACACTCTTTTCATGCTACTTAATGTCTTGCCTTTATCGTTTTATTTTGTTTGTTTTTTTTAAATATCCAGCCGTGGAAATCCTCTATTTCTTGTGGAATCTGAATATAAACGTATTAACGAATTATGGATTAGTCATCAATTGGCCTCTAGTACATCATCGGATTTGATTACACCTTCAAATTTGCAATTTGGTCTATATTAAAAATAATCACAACACATAAGAAGAAGTGTCGGTCAACAATCTACTTTTTTTCAAATCATCGTCATCATCACCGTCGACAGTAGAAATATTACTTCATTATCTTGTCATTTGTCATTATGTGAATGCTTTCATCACTCAGTACTGTTGGATCGGCATGTCAACGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BG931067             [                                                                                                                                                                                                                                                                                                                                       gtCCTCTAGTACATCATCGGATTTGATTACACCTTCAAATTTGCAATTTGGTCTATATTAAAAATAATCACAACACATAAGAAGAAGTGTCGGTCAACAATCTACTTTTTTTCAAATCATCGTCATCATCACCGTCGACAGTAGAAATATTACTTCATTATCTTGTCATTTGTCATTATGTGAATGCTTTCATCACTCAGTACTGTTGGATCGGCATGTCAACGGTGTTAGCTAGCCCCATCCTCCCTCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD080460             [                                                                                                                                                                                                                                                                                                                                                                                TGCAATTTGGTCTATATTAAAAATAATCACAACACATAAGAAGAAGTGTCGGTCAACAATCTACTTTTTTTCAAATCATCGTCATCATCACCGTCGACAGTAGAAATATTACTTCATTATCTTGTCATTTGTCATTATGTGAATGCTTTCATCACTCAGTACTGTTGGATCGGCATGTCAACGGTGTTAGCTAGCCCCATCCTCCCTCTACCCCCCCTATCTTATCAAGTCATTCAACTATCTTTCTTGAATTTATATTTATACATAAATATACACATAGAGTCTTGTTATATGCTATTTTTTTGGAATTCATGAAGTGACGATCTCTCTCATACCATACAGGTTGTTTGTTATCTGTAAAATTTGAAAGGACTCTTTTTTATTTTTCCGTTTCATCTAGTTAAAATAAAAGTCTCTGTTGTGCGCCTACAAATGCGCTTATCTTGATGGAACGAACAGTGATTAATTTTTTTTTAAAATTCTTCATTCTTCCTTTCCCCTATTTATCGGTTACTCTTTTTTTGCATGGTTTTTCTAATTAAGTAGTGTATATGTGTGTTTATGTGTTCCGCAGATGATGTGTGTAAAGTCTAGGATCCATTAGCTCTATTCCCCTCTATTCTTCTTCTCTATATTCATCATTTCATC]


>consensus_8879#0 AGTAAATTCTTNTACTGCTACATAATCAACTGATTCGGTGGATACTGCTTGTCTGTGTTA GGATTGGTGACACTATCCGACTGACTGGATTGAATTACGTGAAGTGAAGTAATTGAATTA GAACATGGTACAATGTTTACTAACCTTACGTAAACTAGACTGTACAAATAGTGAAAATGA ACAGAACACTCTTTTCATGCTACTTAATGTCTTGCCTTTATCGTTTTATTTTGTTTGTTT TTTTTAAATATCCAGCCGTGGAAATCCTCTATTTCTTGTGGAATCTGAATATAAACGTAT TAACGAATTATGGATTAGTCATCAATTGGCCTCTAGTACATCATCGGATTTGATTACACC TTCAAATTTGCAATTTGGTCTATATTAAAAATAATCACAACACATAAGAAGAAGTGTCGG TCAACAATCTACTTTTTTTCAAATCATCGTCATCATCACCGTCGACAGTAGAAATATTAC TTCATTATCTTGTCATTTGTCATTATGTGAATGCTTTCATCACTCAGTACTGTTGGATCG GCATGTCAACGGTGTTAGCTAGCCCCATCCTCCCTCGACCCCCCCTATCTTATCAAGTCA TTCAACTATCTTTCTTGAATTTATATTTATACATAAATATACACATAGAGTCTTGTTATA TGCTATTTTTTTGGAATTCATGAAGTGACGATCTCTCTCATACCATACAGGTTGTTTGTT ATCTGTAAAATTTGAAAGGACTCTTTTTTATTTTTCCGTTTCATCTAGTTAAAATAAAAG TCTCTGTTGTGCGCCTACAAATGCGCTTATCTTGATGGAACGAACAGTGATTAATTTTTT TTTAAAATTCTTCATTCTTCCTTTCCCCTATTTATCGGTTACTCTTTTTTTGCATGGTTT TTCTAATTAAGTAGTGTATATGTGTGTTTATGTGTTCCGCAGATGATGTGTGTAAAGTCT AGGATCCATTAGCTCTATTCCCCTCTATTCTTCTTCTCTATATTCATCATTTCATC



consensusID : consensus_8879#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 704
fasta sequence
                              [TTATGTATTTAACAAAATATGTATATGTGTACTATTTCGACATAAAAAAAGGAGGGGGGGGGGAAACAT-GAAAAATTACAAATAATAAGTGAAGAGAAAGAGAGAAGTATAAGAAAGAAACACCAATGGGTAGATGGATGAAGGAGAGAATTCAGTGAGCATATTTCCAAACTAAACTTTTAAGGTAGATGAAATAAGAAAGAACAAGGGAGAGAGAGAAAAAGACAATCGAAACGAGTAGGTTCGAAAGTGATTATTATTACTTTCCAACTAGTGTTTACACATACCCAACAAACAGATTAAAATTAGTTCAGTACAATTAAGTTTGATGTTCGTTAAGCGTATGCTTTGAATATGTCTATGGCAGATATTGAAAGAAGGTAGAGAAGGCGAAGATATCAAAAGAATACCTTACAGAAACGGATCTTACCAAACAAAAGATGTATACATGATGAAAAATAGAATGAAGAGATACAGAGAAATAGCTACTTTCTTCGCCTCTTTTTTTTCTTCAAGGGTAAATATTACACAACAATAGGATAAGTTGTACTGATAAAGGGGGGGGAGGAGTTNNTAAGATGAGAAATAAATAAATAAACTAGCACACAATCAAACAAGTTTACAAGATGAAATGATGAATATAGACCAAATTGCAAATTTGAAGGTGTAATCAAATCCGATGATGTACTAGAGGCCAATTGATG]

[+] EMBL CD074371             [TTATGTATTTAACAAAATATGTATATGTGTACTATTTCGACATAAAAAAAGGAGGGGGGGGGGAAACAT GAAAAATTACAAATAATAAGTGAAGAGAAAGAGAGAAGTATAAGAAAGAAACACCAATGGGTAGATGGATGAAGGAGAGAATTCAGTGAGCATATTTCCAAACTAAACTTTTAAGGTAGATGAAATAAGAAAGAACAAGGGAGAGAGAGAAAAAGACAATCGAAACGAGTAGGTTCGAAAGTGATTATTATTACTTTCCAACTAGTGTTTACACATACCCAACAAACAGATTAAAATTAGTTCAGTACAATTAAGTTTGATGTTCGTTAAGCGTATGCTTTGAATATGTCTATGGCAGATATTGAAAGAAGGTAGAGAAGGCGAAGATATCAAAAGAATACCTTACAGAAACGGATCTTACCAAACAAAAGATGTATACATGATGAAAAATAGAATGAAGAGATACAGAGAAATAGCTACTTTCTTCGCCTCTTTTTTTTCTTCAAGGGTAAATATTACACAACAATAGGATAAGTTGTACTGATAAAGGGGGGGGAGGAGTTNN                                                                                                                                  ]
[+] EMBL CD085446             [                                                     GGGGGGGGNGAAACATNGAAAAATTACAAATAATAAGTGAAGAGAAAGAGAGAAGTATAAGAAAGAAACACCAATGGGTAGATGGATGAAGGAGAGAATTCAGTGAGCATATTTCCAAACTAAACTTTTAAGGTAGATGAAATAAGAAAGAACAAGGGAGAGAGAGAAAAAGACAATCGAAACGAGTAGGTTCGAAAGTGATTATTATTACTTTCCAACTAGTGTTTACACATACCCAACAAACAGATTAAAATTAGTTCAGTACAATTAAGTTTGATGTTCGTTAAGCGTATGCTTTGAATATGTCTATGGCAGATATTGAAAGAAGGTAGAGAAGGCGAAGATATCAAAAGAATACCTTACAGAAACGGATCTTACCAAACAAAAGATGTATACATGATGAAAAATAGAATGAAGAGATAC                                                                                                                                                                                                                                     ]
[+] EMBL CD085528             [                                                       GGGGGGGGAAACAT GAAAAATTACAAATAATAAGTGAAGAGAAAGAGAGAAGTATAAGAAAGAAACACCAATGGGTAGATGGATGAAGGAGAGAATTCAGTGAGCATATTTCCAAACTAAACTTTTAAGGTAGATGAAATAAGAAAGAACAAGGGAGAGAGAGAAAAAGACAATCGAAACGAGTAGGTTCGAAAGTGATTATTATTACTTTCCAACTAGTGTTTACACATACCCAACAAACAGATTAAAATTAGTTCAGTACAATTAAGTTTGATGTTCGTTAAGCGTACGCTTTGAATATGTCTATGGCAGATATTGAAAGAAGGTAGAGAAGGCGAAGATATCAAAAGAATACCTTACAGAAACGGATCTTACCAAACAAAAGATGTATACATGATGAAAAATAAAATGAAGAGATAC                                                                                                                                                                                                                                     ]
[+] EMBL CD146112             [                                                                                                                                                                                                                                                                                                              AAAATTATTTCCGTACAATTAAGTTTGATGTTCGTTAAGCGTATGCTTTGAATATGTCTATGGCAGATATTGAAAGAAGGTAGAGAAGGCGAAGATATCAAAAGAATACCTTACAGAAACGGATCTTACCAAACAAAAGATGTATACATGATGAAAAATAGAATGAAGAGATACAGAGAAATAGCTACTTTCTTCGCCTCTTTTTTTTCTTCAAGGGTAAATATTACACAACAATAGGATAAGTTGTACTGATAAA GGGGGGGAGGAGTTAGTAAGATGAGAAATAAATAAATAAACTAGCACACAATCAAACAAGTTTACAAGATGAAATGATGAATATAGACCAAATTGCAAATTTGAAGGTGTAATCAAATCCGATGATGTACTAGAGGCCAATTGATG]


>consensus_8879#1 TTATGTATTTAACAAAATATGTATATGTGTACTATTTCGACATAAAAAAAGGAGGGGGGG GGGAAACATGAAAAATTACAAATAATAAGTGAAGAGAAAGAGAGAAGTATAAGAAAGAAA CACCAATGGGTAGATGGATGAAGGAGAGAATTCAGTGAGCATATTTCCAAACTAAACTTT TAAGGTAGATGAAATAAGAAAGAACAAGGGAGAGAGAGAAAAAGACAATCGAAACGAGTA GGTTCGAAAGTGATTATTATTACTTTCCAACTAGTGTTTACACATACCCAACAAACAGAT TAAAATTAGTTCAGTACAATTAAGTTTGATGTTCGTTAAGCGTATGCTTTGAATATGTCT ATGGCAGATATTGAAAGAAGGTAGAGAAGGCGAAGATATCAAAAGAATACCTTACAGAAA CGGATCTTACCAAACAAAAGATGTATACATGATGAAAAATAGAATGAAGAGATACAGAGA AATAGCTACTTTCTTCGCCTCTTTTTTTTCTTCAAGGGTAAATATTACACAACAATAGGA TAAGTTGTACTGATAAAGGGGGGGGAGGAGTTNNTAAGATGAGAAATAAATAAATAAACT AGCACACAATCAAACAAGTTTACAAGATGAAATGATGAATATAGACCAAATTGCAAATTT GAAGGTGTAATCAAATCCGATGATGTACTAGAGGCCAATTGATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8879#0      AGTAAATTCTTNTACTGCTACATAATCAACTGATTCGGTGGATACTGCTTGTCTGTGTTA 60
consensus_8879#1      ------------------------------------------------------------
                                                                                  

consensus_8879#0      GGATTGGTGACACTATCCGACTGACTGGATTGAATTACGTGAAGTGAAGTAATTGAATTA 120
consensus_8879#1      ------------------------------------------------------------
                                                                                  

consensus_8879#0      GAACATGGTACAATGTTTACTAACCTTACGTAAACTAGACTGTACAAATAGTGAAAATGA 180
consensus_8879#1      ------------------------------------------------------------
                                                                                  

consensus_8879#0      ACAGAACACTCTTTTCATGCTACTTAATGTCTTGCCTTTAT-CGTTTTATTTTGTTTGTT 239
consensus_8879#1      --------------TTATG-TATTTAACAAAATATGTATATGTGTACTATTTCGACA--- 42
                                    * *** ** ****     *   * ***  **  ***** *      

consensus_8879#0      TTTTTTAAATATCCAGCCGTGGAAATCCTCTATTTCTTGTGGAATCTGAATATAAACGTA 299
consensus_8879#1      ---TAAAAAAAGGAGGGGGGGGGGAAACATGAAAAATTACAAATAATAAGTGAAGAGAAA 99
                         *  *** *    *  * **  *  *   *    **    *   * * *  * *   *

consensus_8879#0      TTAACGAAT-TATGGATTAGTCATCAATTGGCCTCTAG-TACATCATCGGATTTGATTAC 357
consensus_8879#1      GAGAGAAGTATAAGAAAGAAACACCAATGGGTAGATGGATGAAGGAGAGAATTCAGTGAG 159
                         *  * * ** * *  *  ** **** **    * * *  *  *  * ***   * * 

consensus_8879#0      ACCTTCAAATTTGCAATTTGGTCTATATTAAAAATAATCACAACACATAAGAAGAAGTGT 417
consensus_8879#1      -----CATATTTCCAAACTAAACT---TTTAAGGTAGATGAAATAAGAAAGAACAAGGGA 211
                           ** **** ***  *   **   ** **  **     ** *   ***** *** * 

consensus_8879#0      CGGTCAACAATCTACTTTTTTTCAAATCATCGTCATCATCACCGTCGACAGTAGAAATAT 477
consensus_8879#1      GAGAGAGAAAA------------AGACAATCGAAACGAGTAGGTTCGAAAGTG-----AT 254
                        *  *  **             * *  ****  *  *  *   **** ***      **

consensus_8879#0      TACTTCATTATCTTGTCATTTGTCATTATGTGAATGCTTTCATCACTCAGTACTGTTGGA 537
consensus_8879#1      TATT--ATTACTTTCCAACTAGTGTTTACACA-----------TACCCAACA--AACAGA 299
                      ** *  ****  **   * * **  ***                ** **  *      **

consensus_8879#0      TCGGCATGTCAACGGTGTTAGCTAGCCCCATCCTCCCTCGACCCCCCCTATCTTATCAAG 597
consensus_8879#1      TTAAAATTAGTTCAGTACAATTAAGTTTGATGTTCGTTAAGCGTATGC--TTTGAATATG 357
                      *    **     * **   *   **    **  **  *   *     *  * * *  * *

consensus_8879#0      TCATTCAACTATCTTTCTTGAATTTATATTTATACATAAATATACACATAGAGTCTTGTT 657
consensus_8879#1      TCTATGGCAGATATTGAAAGAAGGTAGAGA-AGGCGAAGATATCAAAAGAATACCTTAC- 415
                      **  *     ** **    ***  ** *   *  *  * ****  * * *    ***   

consensus_8879#0      ATATGCTATTTTTTTGGAATTCATGAAGTGACGATCTCTCTCATACCATACAGGTTGTTT 717
consensus_8879#1      AGAAACGGATCTTACCAAACAAAAGATGTA------TACATGATGAAAAATAGAATG--- 466
                      * *  *   * **    **   * ** **       *   * **   * * **  **   

consensus_8879#0      GTTATCTGTAAAATTTGAAAGGACTCTTTTTTATTTTTCCGTTTCATCTAGTTAAAATAA 777
consensus_8879#1      AAGAGATACAGA----GAAATAGCTACTTTCTTCGCCTCTTTTTTTTCT--TCAAGGGTA 520
                         *  *  * *    ****   **  *** *     **  ***  ***  * **    *

consensus_8879#0      AAGTCTCTGTTGTGCGCCTACAAATGCGCTTATCTTGATGGAACGAACAGTG-ATTAATT 836
consensus_8879#1      AA-----TATTACACAACAATAGGATAAGTTGTACTGATAAAGGGGGGGGAGGAGTTNNT 575
                      **     * **   *  * * *       ** *  ****  *  *    * * * *   *

consensus_8879#0      TTTTTTTAAAATTCTTCATTCTTCCTTTCCCCTATTTATCGGTTACTCTTTTTTTGCATG 896
consensus_8879#1      AAGATGAGAAATAAATAAATAAACTAGCACACAATCAAACAAGT-TTACAAGATGAAATG 634
                          *   ****   * * *   *     * * **  * *   *  *      *   ***

consensus_8879#0      GTTTTTCTA-ATTAAGTAGTGTATATGTGTGTTTATGTGTTCCGCAGATGATGTGTGTAA 955
consensus_8879#1      ATGAATATAGACCAAATTGCAAATTTGAAGGTGTAATCAAATC--CGATGATGTAC-TAG 691
                       *   * ** *  ** * *   ** **   ** **       *   ********   ** 

consensus_8879#0      AGTCTAGGATCCATTAGCTCTATTCCCCTCTATTCTTCTTCTCTATATTCATCATTTCAT 1015
consensus_8879#1      AGGCCA--ATTGATG--------------------------------------------- 704
                      ** * *  **  **                                              

consensus_8879#0      C 1016
consensus_8879#1      -
                       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)