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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8879#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1016 fasta sequence
[AGTAAATTCTTNTACTGCTACATAATCAACTGATTCGGTGGATACTGCTTGTCTGTGTTAGGATTGGTGACACTATCCGACTGACTGGATTGAATTACGTGAAGTGAAGTAATTGAATTAGAACATGGTACAATGTTTACTAACCTTACGTAAACTAGACTGTACAAATAGTGAAAATGAACAGAACACTCTTTTCATGCTACTTAATGTCTTGCCTTTATCGTTTTATTTTGTTTGTTTTTTTTAAATATCCAGCCGTGGAAATCCTCTATTTCTTGTGGAATCTGAATATAAACGTATTAACGAATTATGGATTAGTCATCAATTGGCCTCTAGTACATCATCGGATTTGATTACACCTTCAAATTTGCAATTTGGTCTATATTAAAAATAATCACAACACATAAGAAGAAGTGTCGGTCAACAATCTACTTTTTTTCAAATCATCGTCATCATCACCGTCGACAGTAGAAATATTACTTCATTATCTTGTCATTTGTCATTATGTGAATGCTTTCATCACTCAGTACTGTTGGATCGGCATGTCAACGGTGTTAGCTAGCCCCATCCTCCCTCGACCCCCCCTATCTTATCAAGTCATTCAACTATCTTTCTTGAATTTATATTTATACATAAATATACACATAGAGTCTTGTTATATGCTATTTTTTTGGAATTCATGAAGTGACGATCTCTCTCATACCATACAGGTTGTTTGTTATCTGTAAAATTTGAAAGGACTCTTTTTTATTTTTCCGTTTCATCTAGTTAAAATAAAAGTCTCTGTTGTGCGCCTACAAATGCGCTTATCTTGATGGAACGAACAGTGATTAATTTTTTTTTAAAATTCTTCATTCTTCCTTTCCCCTATTTATCGGTTACTCTTTTTTTGCATGGTTTTTCTAATTAAGTAGTGTATATGTGTGTTTATGTGTTCCGCAGATGATGTGTGTAAAGTCTAGGATCCATTAGCTCTATTCCCCTCTATTCTTCTTCTCTATATTCATCATTTCATC]
[-] EMBL CD178716 [AGTAAATTCTTNTACTGCTACATAATCAACTGATTCGGTGGATACTGCTTGTCTGTGTTAGGATTGGTGACACTATCCGACTGACTGGATTGAATTACGTGAAGTGAAGTAATTGAATTAGAACATGGTACAATGTTTACTAACCTTACGTAAACTAGACTGTACAAATAGTGAAAATGAACAGAACACTCTTTTCATGCTACTTAATGTCTTGCCTTTATCGTTTTATTTTGTTTGTTTTTTTTAAATATCCAGCCGTGGAAATCCTCTATTTCTTGTGGAATCTGAATATAAACGTATTAACGAATTATGGATTAGTCATCAATTGGCCTCTAGTACATCATCGGATTTGATTACACCTTCAAATTTGCAATTTGGTCTATATTAAAAATAATCACAACACATAAGAAGAAGTGTCGGTCAACAATCTACTTTTTTTCAAATCATCGTCATCATCACCGTCGACAGTAGAAATATTACTTCATTATCTTGTCATTTGTCATTATGTGAATGCTTTCATCACTCAGTACTGTTGGATCGGCATGTCAACGGT ]
[+] EMBL BG931067 [ gtCCTCTAGTACATCATCGGATTTGATTACACCTTCAAATTTGCAATTTGGTCTATATTAAAAATAATCACAACACATAAGAAGAAGTGTCGGTCAACAATCTACTTTTTTTCAAATCATCGTCATCATCACCGTCGACAGTAGAAATATTACTTCATTATCTTGTCATTTGTCATTATGTGAATGCTTTCATCACTCAGTACTGTTGGATCGGCATGTCAACGGTGTTAGCTAGCCCCATCCTCCCTCGA ]
[+] EMBL CD080460 [ TGCAATTTGGTCTATATTAAAAATAATCACAACACATAAGAAGAAGTGTCGGTCAACAATCTACTTTTTTTCAAATCATCGTCATCATCACCGTCGACAGTAGAAATATTACTTCATTATCTTGTCATTTGTCATTATGTGAATGCTTTCATCACTCAGTACTGTTGGATCGGCATGTCAACGGTGTTAGCTAGCCCCATCCTCCCTCTACCCCCCCTATCTTATCAAGTCATTCAACTATCTTTCTTGAATTTATATTTATACATAAATATACACATAGAGTCTTGTTATATGCTATTTTTTTGGAATTCATGAAGTGACGATCTCTCTCATACCATACAGGTTGTTTGTTATCTGTAAAATTTGAAAGGACTCTTTTTTATTTTTCCGTTTCATCTAGTTAAAATAAAAGTCTCTGTTGTGCGCCTACAAATGCGCTTATCTTGATGGAACGAACAGTGATTAATTTTTTTTTAAAATTCTTCATTCTTCCTTTCCCCTATTTATCGGTTACTCTTTTTTTGCATGGTTTTTCTAATTAAGTAGTGTATATGTGTGTTTATGTGTTCCGCAGATGATGTGTGTAAAGTCTAGGATCCATTAGCTCTATTCCCCTCTATTCTTCTTCTCTATATTCATCATTTCATC]
consensusID : consensus_8879#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 704 fasta sequence
[TTATGTATTTAACAAAATATGTATATGTGTACTATTTCGACATAAAAAAAGGAGGGGGGGGGGAAACAT-GAAAAATTACAAATAATAAGTGAAGAGAAAGAGAGAAGTATAAGAAAGAAACACCAATGGGTAGATGGATGAAGGAGAGAATTCAGTGAGCATATTTCCAAACTAAACTTTTAAGGTAGATGAAATAAGAAAGAACAAGGGAGAGAGAGAAAAAGACAATCGAAACGAGTAGGTTCGAAAGTGATTATTATTACTTTCCAACTAGTGTTTACACATACCCAACAAACAGATTAAAATTAGTTCAGTACAATTAAGTTTGATGTTCGTTAAGCGTATGCTTTGAATATGTCTATGGCAGATATTGAAAGAAGGTAGAGAAGGCGAAGATATCAAAAGAATACCTTACAGAAACGGATCTTACCAAACAAAAGATGTATACATGATGAAAAATAGAATGAAGAGATACAGAGAAATAGCTACTTTCTTCGCCTCTTTTTTTTCTTCAAGGGTAAATATTACACAACAATAGGATAAGTTGTACTGATAAAGGGGGGGGAGGAGTTNNTAAGATGAGAAATAAATAAATAAACTAGCACACAATCAAACAAGTTTACAAGATGAAATGATGAATATAGACCAAATTGCAAATTTGAAGGTGTAATCAAATCCGATGATGTACTAGAGGCCAATTGATG]
[+] EMBL CD074371 [TTATGTATTTAACAAAATATGTATATGTGTACTATTTCGACATAAAAAAAGGAGGGGGGGGGGAAACAT GAAAAATTACAAATAATAAGTGAAGAGAAAGAGAGAAGTATAAGAAAGAAACACCAATGGGTAGATGGATGAAGGAGAGAATTCAGTGAGCATATTTCCAAACTAAACTTTTAAGGTAGATGAAATAAGAAAGAACAAGGGAGAGAGAGAAAAAGACAATCGAAACGAGTAGGTTCGAAAGTGATTATTATTACTTTCCAACTAGTGTTTACACATACCCAACAAACAGATTAAAATTAGTTCAGTACAATTAAGTTTGATGTTCGTTAAGCGTATGCTTTGAATATGTCTATGGCAGATATTGAAAGAAGGTAGAGAAGGCGAAGATATCAAAAGAATACCTTACAGAAACGGATCTTACCAAACAAAAGATGTATACATGATGAAAAATAGAATGAAGAGATACAGAGAAATAGCTACTTTCTTCGCCTCTTTTTTTTCTTCAAGGGTAAATATTACACAACAATAGGATAAGTTGTACTGATAAAGGGGGGGGAGGAGTTNN ]
[+] EMBL CD085446 [ GGGGGGGGNGAAACATNGAAAAATTACAAATAATAAGTGAAGAGAAAGAGAGAAGTATAAGAAAGAAACACCAATGGGTAGATGGATGAAGGAGAGAATTCAGTGAGCATATTTCCAAACTAAACTTTTAAGGTAGATGAAATAAGAAAGAACAAGGGAGAGAGAGAAAAAGACAATCGAAACGAGTAGGTTCGAAAGTGATTATTATTACTTTCCAACTAGTGTTTACACATACCCAACAAACAGATTAAAATTAGTTCAGTACAATTAAGTTTGATGTTCGTTAAGCGTATGCTTTGAATATGTCTATGGCAGATATTGAAAGAAGGTAGAGAAGGCGAAGATATCAAAAGAATACCTTACAGAAACGGATCTTACCAAACAAAAGATGTATACATGATGAAAAATAGAATGAAGAGATAC ]
[+] EMBL CD085528 [ GGGGGGGGAAACAT GAAAAATTACAAATAATAAGTGAAGAGAAAGAGAGAAGTATAAGAAAGAAACACCAATGGGTAGATGGATGAAGGAGAGAATTCAGTGAGCATATTTCCAAACTAAACTTTTAAGGTAGATGAAATAAGAAAGAACAAGGGAGAGAGAGAAAAAGACAATCGAAACGAGTAGGTTCGAAAGTGATTATTATTACTTTCCAACTAGTGTTTACACATACCCAACAAACAGATTAAAATTAGTTCAGTACAATTAAGTTTGATGTTCGTTAAGCGTACGCTTTGAATATGTCTATGGCAGATATTGAAAGAAGGTAGAGAAGGCGAAGATATCAAAAGAATACCTTACAGAAACGGATCTTACCAAACAAAAGATGTATACATGATGAAAAATAAAATGAAGAGATAC ]
[+] EMBL CD146112 [ AAAATTATTTCCGTACAATTAAGTTTGATGTTCGTTAAGCGTATGCTTTGAATATGTCTATGGCAGATATTGAAAGAAGGTAGAGAAGGCGAAGATATCAAAAGAATACCTTACAGAAACGGATCTTACCAAACAAAAGATGTATACATGATGAAAAATAGAATGAAGAGATACAGAGAAATAGCTACTTTCTTCGCCTCTTTTTTTTCTTCAAGGGTAAATATTACACAACAATAGGATAAGTTGTACTGATAAA GGGGGGGAGGAGTTAGTAAGATGAGAAATAAATAAATAAACTAGCACACAATCAAACAAGTTTACAAGATGAAATGATGAATATAGACCAAATTGCAAATTTGAAGGTGTAATCAAATCCGATGATGTACTAGAGGCCAATTGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8879#0 AGTAAATTCTTNTACTGCTACATAATCAACTGATTCGGTGGATACTGCTTGTCTGTGTTA 60
consensus_8879#1 ------------------------------------------------------------
consensus_8879#0 GGATTGGTGACACTATCCGACTGACTGGATTGAATTACGTGAAGTGAAGTAATTGAATTA 120
consensus_8879#1 ------------------------------------------------------------
consensus_8879#0 GAACATGGTACAATGTTTACTAACCTTACGTAAACTAGACTGTACAAATAGTGAAAATGA 180
consensus_8879#1 ------------------------------------------------------------
consensus_8879#0 ACAGAACACTCTTTTCATGCTACTTAATGTCTTGCCTTTAT-CGTTTTATTTTGTTTGTT 239
consensus_8879#1 --------------TTATG-TATTTAACAAAATATGTATATGTGTACTATTTCGACA--- 42
* *** ** **** * * *** ** ***** *
consensus_8879#0 TTTTTTAAATATCCAGCCGTGGAAATCCTCTATTTCTTGTGGAATCTGAATATAAACGTA 299
consensus_8879#1 ---TAAAAAAAGGAGGGGGGGGGGAAACATGAAAAATTACAAATAATAAGTGAAGAGAAA 99
* *** * * * ** * * * ** * * * * * * *
consensus_8879#0 TTAACGAAT-TATGGATTAGTCATCAATTGGCCTCTAG-TACATCATCGGATTTGATTAC 357
consensus_8879#1 GAGAGAAGTATAAGAAAGAAACACCAATGGGTAGATGGATGAAGGAGAGAATTCAGTGAG 159
* * * ** * * * ** **** ** * * * * * * *** * *
consensus_8879#0 ACCTTCAAATTTGCAATTTGGTCTATATTAAAAATAATCACAACACATAAGAAGAAGTGT 417
consensus_8879#1 -----CATATTTCCAAACTAAACT---TTTAAGGTAGATGAAATAAGAAAGAACAAGGGA 211
** **** *** * ** ** ** ** ** * ***** *** *
consensus_8879#0 CGGTCAACAATCTACTTTTTTTCAAATCATCGTCATCATCACCGTCGACAGTAGAAATAT 477
consensus_8879#1 GAGAGAGAAAA------------AGACAATCGAAACGAGTAGGTTCGAAAGTG-----AT 254
* * ** * * **** * * * **** *** **
consensus_8879#0 TACTTCATTATCTTGTCATTTGTCATTATGTGAATGCTTTCATCACTCAGTACTGTTGGA 537
consensus_8879#1 TATT--ATTACTTTCCAACTAGTGTTTACACA-----------TACCCAACA--AACAGA 299
** * **** ** * * ** *** ** ** * **
consensus_8879#0 TCGGCATGTCAACGGTGTTAGCTAGCCCCATCCTCCCTCGACCCCCCCTATCTTATCAAG 597
consensus_8879#1 TTAAAATTAGTTCAGTACAATTAAGTTTGATGTTCGTTAAGCGTATGC--TTTGAATATG 357
* ** * ** * ** ** ** * * * * * * * *
consensus_8879#0 TCATTCAACTATCTTTCTTGAATTTATATTTATACATAAATATACACATAGAGTCTTGTT 657
consensus_8879#1 TCTATGGCAGATATTGAAAGAAGGTAGAGA-AGGCGAAGATATCAAAAGAATACCTTAC- 415
** * ** ** *** ** * * * * **** * * * ***
consensus_8879#0 ATATGCTATTTTTTTGGAATTCATGAAGTGACGATCTCTCTCATACCATACAGGTTGTTT 717
consensus_8879#1 AGAAACGGATCTTACCAAACAAAAGATGTA------TACATGATGAAAAATAGAATG--- 466
* * * * ** ** * ** ** * * ** * * ** **
consensus_8879#0 GTTATCTGTAAAATTTGAAAGGACTCTTTTTTATTTTTCCGTTTCATCTAGTTAAAATAA 777
consensus_8879#1 AAGAGATACAGA----GAAATAGCTACTTTCTTCGCCTCTTTTTTTTCT--TCAAGGGTA 520
* * * * **** ** *** * ** *** *** * ** *
consensus_8879#0 AAGTCTCTGTTGTGCGCCTACAAATGCGCTTATCTTGATGGAACGAACAGTG-ATTAATT 836
consensus_8879#1 AA-----TATTACACAACAATAGGATAAGTTGTACTGATAAAGGGGGGGGAGGAGTTNNT 575
** * ** * * * * ** * **** * * * * * * *
consensus_8879#0 TTTTTTTAAAATTCTTCATTCTTCCTTTCCCCTATTTATCGGTTACTCTTTTTTTGCATG 896
consensus_8879#1 AAGATGAGAAATAAATAAATAAACTAGCACACAATCAAACAAGT-TTACAAGATGAAATG 634
* **** * * * * * * ** * * * * * ***
consensus_8879#0 GTTTTTCTA-ATTAAGTAGTGTATATGTGTGTTTATGTGTTCCGCAGATGATGTGTGTAA 955
consensus_8879#1 ATGAATATAGACCAAATTGCAAATTTGAAGGTGTAATCAAATC--CGATGATGTAC-TAG 691
* * ** * ** * * ** ** ** ** * ******** **
consensus_8879#0 AGTCTAGGATCCATTAGCTCTATTCCCCTCTATTCTTCTTCTCTATATTCATCATTTCAT 1015
consensus_8879#1 AGGCCA--ATTGATG--------------------------------------------- 704
** * * ** **
consensus_8879#0 C 1016
consensus_8879#1 -
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||