|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8882#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1206 fasta sequence
[ACCAGACAATTGAATCTGGATTATGAATTATCTGGTTTAAATGTACGATCAGCTTTGTTTAAAAAATTACAGAGGAATAAATCAAATTTAAACAAAGTGTTGCAAAGAATACTAACTGGTTTATTATTTCAATTGGAAGTTGATGCACGTGTACCTATTTCAGAAGAATGGTCAAATGCGTTGTTATCTAATTTGATTTATCTTGGACAATTATTACGTTTAAGTGTTGGACGTAAACCAGTATTGAGAATATTTCGTATTGCTAATAAAATTGCATTGGATGAATTAAACAATAGACCACAATATTATTGTCAAAGGCTACTAGCTTTGAAATTGACTACCGGTCTTTTATTACGTCTACCTCATCCGAATACAACGCAACTATTTGATATGTTTTCACTAAATACTCGACCTTCAAGTGATTCTGATAATCAATTGTTAGATCAGTCAGATGAGAATCTATCCGTTAAAAAACAAGTTCCAGCTTATTTTGGCTACTTAAGATCTGGTTCGAAATTAGTTAGTCGGGAATTTCGTCAGCGTGAACGATTAGCTTTTACAGCAGCTTCATCATTAGCTTCAGCTGTCAACGATGATACAACAGATATGGGCGCCAGAATACGACTACGTGGTATGCATCTTTCTAAAGAACTTACTGCTAGAGCGAAATCAAGACGAAGAAGAGCACAGGCTCGCCTCCGTCGTGCACTCATGTCAGGTACAATTAGACCAGAGAGTGCGAATAGCCTTGTTGCTTCTGTATCAGCTGGAATGGCAAAGGCAGGACCTGATCAATTAGTTGAATTAATTGAGTCAACTGAATCTGCTCTTACCCAAGAACTTGGTGGTGGAAATCATCAACTCATTCAGATTATATGCAGTCGTGCATCGTTAGGCGCTCGTGTTATTCGAGAACGACGTAAGATGCATAAGGTCACTCGTAATGCTCTTGGTGTAGCATGGAATGGTCCAGTGAAAAAGAAATCCAAGTTATTAGATGTAGCATCTGAACCTTTGGAAATGAATAATTTCAGTGCGGACGAGGTTGACACATCTAATCGGTTGCAAAAAAGAAAATTATCTTCGGATGAAGCCTCTGTAGAACGTAATCAAAAAGCCACCCCGCACGAGAAAACAAAGAAACCGCGAATAAGTTTGTGAAAGCATTTTGTAACCCTGTTTTTTGTCTACAATAAATATAAATCG]
[+] EMBL CD113822 [ACCAGACAATTGAATCTGGATTATGAATTATCTGGTTTAAATGTACGATCAGCTTTGTTTAAAAAATTACAGAGGAATAAATCAAATTTAAACAAAGTGTTGCAAAGAATACTAACTGGTTTATTATTTCAATTGGAAGTTGATGCACGTGTACCTATTTCAGAAGAATGGTCAAATGCGTTGTTATCTAATTTGATTTATCTTGGACAATTATTACGTTTAAGTGTTGGACGTAAACCAGTATTGAGAATATTTCGTATTGCTAATAAAATTGCATTGGATGAATTAAACAATAGACCACAATATTATTGTCAAAGGCTACTAGCTTTGAAATTGACTACCGGTCTTTTATTACGTCTACCTCATCCGAATACAACGCAACTATTTGATATGTTTTCACTAAATACTCGACCTTCAAGTGATTCTGATAATCAATTGTTAGATCAGTCAGATGAGAATCTATCCGTTAAAAAACAAGTTCCAGCTTATTTTGGCTACTTAAGATCTGGTTCGAAATTA ]
[-] EMBL CD144940 [ CTATGTGATATGTTTTCACTANATACTCGACCTTCAAGTGATTCTGATAATCAATTGTTAGATCAGTCAGATGAGAATCTATCCGTTAAAAAACAAGTTCCAGCTTATTTTGCCTACTTAAGATCTGCTTCGAAATTAGTTAGTCGGGAATTTCGTCAGCGTGAACGATTAGCTTTTACAGCAGCTTCATCATTAGCTTCAGCTGTCAACGATGATACAACAGATATGGGCGCCAGAATACGACTACGTGGTATGCATCTTTCTAAAGAACTTACTGCTAGAGCGAAATCAAGACGAAGAAGAGCACAGGCTCGCCTCCGTCGTGCACTCATGTCAGGTACAATTAGACCAGAGAGTGCGAATAGCCTTGTTGCTTCTGTATCAGCTGGAATGGCAAAGGCAGGACCTGATCAATTAGTTGAATTAATTGAGTCAACTGAATCTGCTCTTACCCAAGAACTTGGTGGTGGAAATCA ]
[-] EMBL CD074735 [ GGTATGCATCTTTCTAAAGAACTTACTGCTAGAGCGAAATCAAGACGAAGAAGAGCACAGGCTCGCCTCCGTCGTGCACTCATGTCAGGTACAATTAGACCAGAGAGTGCGAATAGCCTTGTTGCTTCTGTATCAGCTGGAATGGCAAAGGCAGGACCTGATCAATTAGTTGAATTAATTGAGTCAACTGAATCTGCTCTTACCCAAGAACTTGGTGGTGGAAATCATCAACTCATTCAGATTATATGCAGTCGTGCATCGTTAGGCGCTCGTGTTATTCGAGAACGACGTAAGATGCATAAGGTCACTCGTAATGCTCTTGGTGTAGCATGGAATGGTCCAGTGAAAAAGAAATCCAAGTTATTAGATGTAGCATCTGAACCTTTGGAAATGAATAATTTCAGTGCGGACGAGGTTGACACATCTAATCGGTTGCAAAAAAGAAAATTATCTTCGGATGAAGCCTCTGTAGAACGTAATCAAAAAGCCACCCCGCACGAGAAAACAAAGAAACCGCGAATAAGTTTGTGAAAGCATTTTGTAACCCTGTTTTTTGTCTACAATAAATATAAATCG]
consensusID : consensus_8882#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1161 fasta sequence
[ACCTGGTTTAAGAATTATCTGGTTAAATGTACGATCAGCTTTGTTTAAAAAATTACAGAGGAATAAATCAAATTTAAACAAAGTGTTGCAAAGAATACTAACTGGTTTATTATTTCAATTGGCAGTTGATGCACGTGTACCTATTTCAGAAGAATGGTCAAATGCGTTGTTATCTAATTTGATTTATCTTGGACAATTATTACATTTAAGTGTTGGACGTAAACCAGTATTGCGACTATTTCGAATTAAACAATAGACCACAATATTATTGTCAAAGGCTACTAGCTTTGAAATTGACTACCGGTCTTTTATTACGTCTACCTCATCCGAATACAACGCAACTATTTGATATGTTTTCACTAAATACTCGACCTTCAAGTGNNNNNNNNNNTCAATTGTTAGATCAGTCAGATGAGAATCTATCCGTTAAAAAACAAGTTCCAGCTTATTTTGCCTACTTAAGATCTGCTTCGAAATTAATTAGTCGGGAATTTCGTCAGCGTGAACGATTAGCTTTTACAGCAGCTTCATCATTAGCTNNNNNNNNCAACGATGATACAACAGATATGGGCGCCAGAATACGACTACGTGGTATGCATCTTTCTAAAGAACTTACTGCTAGAGCGAAATCAAGACGAAGAAGAGCACAGGCTCGCCTCCGTCGTGCACTCATGTCAGGTACAATTTCTGTATCAGCTGGAATGGCAAAGGCAGGACCTGATCAATTAGTTGAATTAATTGAGTCAACTGAATCTGCTCTTACCCAAGAACTTGGTGGTGGAAATCATCAACTCATTCAGATTATATGCAGTCGTGCATCGTTAGGCGCTCGTGTTATTCGAGAACGACGTAAGATGCATAAGGTCACTCGTAATGCTCTTGGTGTAGCATGGAATGGTCCAGTGAAAAAGAAATCCAAGTTATTAGATGTAGCATCTGAACCTTTGGAAATGAATAATTTCAGTGCGGACGAGGTTGACACATCTAATCGGTTGCAAAAAAAAGAATTATCTTCGGATGAAGCCTCTGTAGAACGTAATCAAAAAGCCACACCGCACGAGAAAACAAAGAAACCGCGAATAAGTTTGTGAAAGCATTTTGTAACCCTGTTTTTTGTCTACAATAAATATAAATCGATTAATTGTAAAAAAAAAAAAAAAA]
[+] EMBL CD113774 [ACCTGGTTTAAGAATTATCTGGTTAAATGTACGATCAGCTTTGTTTAAAAAATTACAGAGGAATAAATCAAATTTAAACAAAGTGTTGCAAAGAATACTAACTGGTTTATTATTTCAATTGGCAGTTGATGCACGTGTACCTATTTCAGAAGAATGGTCAAATGCGTTGTTATCTAATTTGATTTATCTTGGACAATTATTACATTTAAGTGTTGGACGTAAACCAGTATTGCGACTATTTC ]
[+] EMBL CD080903 [ ATTATTACATTTAAGTGTTGGACGTAAACCAGTATTGAGAATAGGATGAATTAAACAATAGACCACAATATTATTGTCAAAGGCTACTAGCTTTGAAATTGACTACCGGTCTTTTATTACGTCTACCTCATCCGAATACAACGCAACTATTTGATATGTTTTCACTAAATACTCGACCTTCAAGTGNNNNNNNNNNTCAATTGTTAGATCAGTCAGATGAGAATCTATCCGTTAAAAAACAAGTTCCAGCTTATTTTGCCTACTTAAGATCTGCTTCGAAATTAATTAGTCGGGAATTTCGTCAGCGTGAACGATTAGCTTTTACAGCAGCTTCATCATTAGCTNNNNNNNNCAACGATGATACAACAGATATGGGCGCCAGAATACGACTACGTGGTATGCATCTTTCTAAAGAACTTACTGCTAGAGCGAAATCAAGACGAAGAAGAGCACAGGCTCGCCTCCGTCGTGCACTCATGTCAGGTACAATTTCTGTATCAGCTGGAATGGCAAAGGCAGGACCTGATCAATTAGTTGAATTAATTGAGTCAACTGAATCTGCTCTTACCCAAGAACTTGGTGGTGGAAATCATCAACTCATTCAGATTATATGCAGTCGTGCATCGTTAGGCGCTC ]
[-] EMBL CD190384 [ GGACCTGATCAATTAGTTGAATTAATTGAGTCAACTGAATCTGCTCTTACCCAAGAACTTGGTGGTGGAAATCATCAACTCATTCAGATTATACGCAGTCGTGCATCGTTAGGCGCTCGTGTTATTCGAGAACGACGTAAGATGCATAAGGTCACTCGTAATGCTCTTGGTGTAGCATGGAATGGTCCAGTGAAAAAGAAATCCAAGTTATTAGATGTAGCATCTGAACCTTTGGAAATGAATAATTTCAGTGCGGACGAGGTTGACACATCTAATCGGTTGCAAAAAAAAGAA ]
[-] EMBL AI395238 [ TCAACTCATTCAGATTATATGCAGTCGTGCATCGTTAGGCGCTCGTGTTATTCGAGAACGACGTAAGATGCATAAGGTCACTCGTAATGCTCTTGGTGTAGCATGGAATGGTCCAGTGAAAAAGAAATCCAAGTTATTAGATGTAGCATCTGAACCTTTGGAAATGAATAATTTCAGTGCGGACGAGGTTGACACATCTAATCGGTTGCAAAAAAGAAAATTATCTTCGGATGAAGCCTCTGTAGAACGTAATCAAAAAGCCACACCGCACGAGAAAACAAAGAAACCGCGAATAAGTTTGTGAAAGCATTTTGTAACCCTGTTTTTTGTCTACAATAAATATAAATCGATTAATTGTAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8882#0 ACCAGACAATTGAATCTGGATTATGAATTATCTGGTTTAAATGTACGATCAGCTTTGTTT 60
consensus_8882#1 -------------ACCTGGTTTAAGAATTATCTGGTT-AAATGTACGATCAGCTTTGTTT 46
* **** *** ************* **********************
consensus_8882#0 AAAAAATTACAGAGGAATAAATCAAATTTAAACAAAGTGTTGCAAAGAATACTAACTGGT 120
consensus_8882#1 AAAAAATTACAGAGGAATAAATCAAATTTAAACAAAGTGTTGCAAAGAATACTAACTGGT 106
************************************************************
consensus_8882#0 TTATTATTTCAATTGGAAGTTGATGCACGTGTACCTATTTCAGAAGAATGGTCAAATGCG 180
consensus_8882#1 TTATTATTTCAATTGGCAGTTGATGCACGTGTACCTATTTCAGAAGAATGGTCAAATGCG 166
**************** *******************************************
consensus_8882#0 TTGTTATCTAATTTGATTTATCTTGGACAATTATTACGTTTAAGTGTTGGACGTAAACCA 240
consensus_8882#1 TTGTTATCTAATTTGATTTATCTTGGACAATTATTACATTTAAGTGTTGGACGTAAACCA 226
************************************* **********************
consensus_8882#0 GTATTGAGAATATTTCGTATTGCTAATAAAATTGCATTGGATGAATTAAACAATAGACCA 300
consensus_8882#1 GTATTGCGACTATTTCG--------------------------AATTAAACAATAGACCA 260
****** ** ******* *****************
consensus_8882#0 CAATATTATTGTCAAAGGCTACTAGCTTTGAAATTGACTACCGGTCTTTTATTACGTCTA 360
consensus_8882#1 CAATATTATTGTCAAAGGCTACTAGCTTTGAAATTGACTACCGGTCTTTTATTACGTCTA 320
************************************************************
consensus_8882#0 CCTCATCCGAATACAACGCAACTATTTGATATGTTTTCACTAAATACTCGACCTTCAAGT 420
consensus_8882#1 CCTCATCCGAATACAACGCAACTATTTGATATGTTTTCACTAAATACTCGACCTTCAAGT 380
************************************************************
consensus_8882#0 GATTCTGATAATCAATTGTTAGATCAGTCAGATGAGAATCTATCCGTTAAAAAACAAGTT 480
consensus_8882#1 GNNNNNNNNNNTCAATTGTTAGATCAGTCAGATGAGAATCTATCCGTTAAAAAACAAGTT 440
* *************************************************
consensus_8882#0 CCAGCTTATTTTGGCTACTTAAGATCTGGTTCGAAATTAGTTAGTCGGGAATTTCGTCAG 540
consensus_8882#1 CCAGCTTATTTTGCCTACTTAAGATCTGCTTCGAAATTAATTAGTCGGGAATTTCGTCAG 500
************* ************** ********** ********************
consensus_8882#0 CGTGAACGATTAGCTTTTACAGCAGCTTCATCATTAGCTTCAGCTGTCAACGATGATACA 600
consensus_8882#1 CGTGAACGATTAGCTTTTACAGCAGCTTCATCATTAGCTNNNNNNNNCAACGATGATACA 560
*************************************** *************
consensus_8882#0 ACAGATATGGGCGCCAGAATACGACTACGTGGTATGCATCTTTCTAAAGAACTTACTGCT 660
consensus_8882#1 ACAGATATGGGCGCCAGAATACGACTACGTGGTATGCATCTTTCTAAAGAACTTACTGCT 620
************************************************************
consensus_8882#0 AGAGCGAAATCAAGACGAAGAAGAGCACAGGCTCGCCTCCGTCGTGCACTCATGTCAGGT 720
consensus_8882#1 AGAGCGAAATCAAGACGAAGAAGAGCACAGGCTCGCCTCCGTCGTGCACTCATGTCAGGT 680
************************************************************
consensus_8882#0 ACAATTAGACCAGAGAGTGCGAATAGCCTTGTTGCTTCTGTATCAGCTGGAATGGCAAAG 780
consensus_8882#1 ACAATT------------------------------TCTGTATCAGCTGGAATGGCAAAG 710
****** ************************
consensus_8882#0 GCAGGACCTGATCAATTAGTTGAATTAATTGAGTCAACTGAATCTGCTCTTACCCAAGAA 840
consensus_8882#1 GCAGGACCTGATCAATTAGTTGAATTAATTGAGTCAACTGAATCTGCTCTTACCCAAGAA 770
************************************************************
consensus_8882#0 CTTGGTGGTGGAAATCATCAACTCATTCAGATTATATGCAGTCGTGCATCGTTAGGCGCT 900
consensus_8882#1 CTTGGTGGTGGAAATCATCAACTCATTCAGATTATATGCAGTCGTGCATCGTTAGGCGCT 830
************************************************************
consensus_8882#0 CGTGTTATTCGAGAACGACGTAAGATGCATAAGGTCACTCGTAATGCTCTTGGTGTAGCA 960
consensus_8882#1 CGTGTTATTCGAGAACGACGTAAGATGCATAAGGTCACTCGTAATGCTCTTGGTGTAGCA 890
************************************************************
consensus_8882#0 TGGAATGGTCCAGTGAAAAAGAAATCCAAGTTATTAGATGTAGCATCTGAACCTTTGGAA 1020
consensus_8882#1 TGGAATGGTCCAGTGAAAAAGAAATCCAAGTTATTAGATGTAGCATCTGAACCTTTGGAA 950
************************************************************
consensus_8882#0 ATGAATAATTTCAGTGCGGACGAGGTTGACACATCTAATCGGTTGCAAAAAAGAAAATTA 1080
consensus_8882#1 ATGAATAATTTCAGTGCGGACGAGGTTGACACATCTAATCGGTTGCAAAAAAAAGAATTA 1010
**************************************************** * *****
consensus_8882#0 TCTTCGGATGAAGCCTCTGTAGAACGTAATCAAAAAGCCACCCCGCACGAGAAAACAAAG 1140
consensus_8882#1 TCTTCGGATGAAGCCTCTGTAGAACGTAATCAAAAAGCCACACCGCACGAGAAAACAAAG 1070
***************************************** ******************
consensus_8882#0 AAACCGCGAATAAGTTTGTGAAAGCATTTTGTAACCCTGTTTTTTGTCTACAATAAATAT 1200
consensus_8882#1 AAACCGCGAATAAGTTTGTGAAAGCATTTTGTAACCCTGTTTTTTGTCTACAATAAATAT 1130
************************************************************
consensus_8882#0 AAATCG------------------------- 1206
consensus_8882#1 AAATCGATTAATTGTAAAAAAAAAAAAAAAA 1161
******
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||