These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8882#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1206 fasta sequence [ACCAGACAATTGAATCTGGATTATGAATTATCTGGTTTAAATGTACGATCAGCTTTGTTTAAAAAATTACAGAGGAATAAATCAAATTTAAACAAAGTGTTGCAAAGAATACTAACTGGTTTATTATTTCAATTGGAAGTTGATGCACGTGTACCTATTTCAGAAGAATGGTCAAATGCGTTGTTATCTAATTTGATTTATCTTGGACAATTATTACGTTTAAGTGTTGGACGTAAACCAGTATTGAGAATATTTCGTATTGCTAATAAAATTGCATTGGATGAATTAAACAATAGACCACAATATTATTGTCAAAGGCTACTAGCTTTGAAATTGACTACCGGTCTTTTATTACGTCTACCTCATCCGAATACAACGCAACTATTTGATATGTTTTCACTAAATACTCGACCTTCAAGTGATTCTGATAATCAATTGTTAGATCAGTCAGATGAGAATCTATCCGTTAAAAAACAAGTTCCAGCTTATTTTGGCTACTTAAGATCTGGTTCGAAATTAGTTAGTCGGGAATTTCGTCAGCGTGAACGATTAGCTTTTACAGCAGCTTCATCATTAGCTTCAGCTGTCAACGATGATACAACAGATATGGGCGCCAGAATACGACTACGTGGTATGCATCTTTCTAAAGAACTTACTGCTAGAGCGAAATCAAGACGAAGAAGAGCACAGGCTCGCCTCCGTCGTGCACTCATGTCAGGTACAATTAGACCAGAGAGTGCGAATAGCCTTGTTGCTTCTGTATCAGCTGGAATGGCAAAGGCAGGACCTGATCAATTAGTTGAATTAATTGAGTCAACTGAATCTGCTCTTACCCAAGAACTTGGTGGTGGAAATCATCAACTCATTCAGATTATATGCAGTCGTGCATCGTTAGGCGCTCGTGTTATTCGAGAACGACGTAAGATGCATAAGGTCACTCGTAATGCTCTTGGTGTAGCATGGAATGGTCCAGTGAAAAAGAAATCCAAGTTATTAGATGTAGCATCTGAACCTTTGGAAATGAATAATTTCAGTGCGGACGAGGTTGACACATCTAATCGGTTGCAAAAAAGAAAATTATCTTCGGATGAAGCCTCTGTAGAACGTAATCAAAAAGCCACCCCGCACGAGAAAACAAAGAAACCGCGAATAAGTTTGTGAAAGCATTTTGTAACCCTGTTTTTTGTCTACAATAAATATAAATCG] [+] EMBL CD113822 [ACCAGACAATTGAATCTGGATTATGAATTATCTGGTTTAAATGTACGATCAGCTTTGTTTAAAAAATTACAGAGGAATAAATCAAATTTAAACAAAGTGTTGCAAAGAATACTAACTGGTTTATTATTTCAATTGGAAGTTGATGCACGTGTACCTATTTCAGAAGAATGGTCAAATGCGTTGTTATCTAATTTGATTTATCTTGGACAATTATTACGTTTAAGTGTTGGACGTAAACCAGTATTGAGAATATTTCGTATTGCTAATAAAATTGCATTGGATGAATTAAACAATAGACCACAATATTATTGTCAAAGGCTACTAGCTTTGAAATTGACTACCGGTCTTTTATTACGTCTACCTCATCCGAATACAACGCAACTATTTGATATGTTTTCACTAAATACTCGACCTTCAAGTGATTCTGATAATCAATTGTTAGATCAGTCAGATGAGAATCTATCCGTTAAAAAACAAGTTCCAGCTTATTTTGGCTACTTAAGATCTGGTTCGAAATTA ] [-] EMBL CD144940 [ CTATGTGATATGTTTTCACTANATACTCGACCTTCAAGTGATTCTGATAATCAATTGTTAGATCAGTCAGATGAGAATCTATCCGTTAAAAAACAAGTTCCAGCTTATTTTGCCTACTTAAGATCTGCTTCGAAATTAGTTAGTCGGGAATTTCGTCAGCGTGAACGATTAGCTTTTACAGCAGCTTCATCATTAGCTTCAGCTGTCAACGATGATACAACAGATATGGGCGCCAGAATACGACTACGTGGTATGCATCTTTCTAAAGAACTTACTGCTAGAGCGAAATCAAGACGAAGAAGAGCACAGGCTCGCCTCCGTCGTGCACTCATGTCAGGTACAATTAGACCAGAGAGTGCGAATAGCCTTGTTGCTTCTGTATCAGCTGGAATGGCAAAGGCAGGACCTGATCAATTAGTTGAATTAATTGAGTCAACTGAATCTGCTCTTACCCAAGAACTTGGTGGTGGAAATCA ] [-] EMBL CD074735 [ GGTATGCATCTTTCTAAAGAACTTACTGCTAGAGCGAAATCAAGACGAAGAAGAGCACAGGCTCGCCTCCGTCGTGCACTCATGTCAGGTACAATTAGACCAGAGAGTGCGAATAGCCTTGTTGCTTCTGTATCAGCTGGAATGGCAAAGGCAGGACCTGATCAATTAGTTGAATTAATTGAGTCAACTGAATCTGCTCTTACCCAAGAACTTGGTGGTGGAAATCATCAACTCATTCAGATTATATGCAGTCGTGCATCGTTAGGCGCTCGTGTTATTCGAGAACGACGTAAGATGCATAAGGTCACTCGTAATGCTCTTGGTGTAGCATGGAATGGTCCAGTGAAAAAGAAATCCAAGTTATTAGATGTAGCATCTGAACCTTTGGAAATGAATAATTTCAGTGCGGACGAGGTTGACACATCTAATCGGTTGCAAAAAAGAAAATTATCTTCGGATGAAGCCTCTGTAGAACGTAATCAAAAAGCCACCCCGCACGAGAAAACAAAGAAACCGCGAATAAGTTTGTGAAAGCATTTTGTAACCCTGTTTTTTGTCTACAATAAATATAAATCG] consensusID : consensus_8882#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1161 fasta sequence [ACCTGGTTTAAGAATTATCTGGTTAAATGTACGATCAGCTTTGTTTAAAAAATTACAGAGGAATAAATCAAATTTAAACAAAGTGTTGCAAAGAATACTAACTGGTTTATTATTTCAATTGGCAGTTGATGCACGTGTACCTATTTCAGAAGAATGGTCAAATGCGTTGTTATCTAATTTGATTTATCTTGGACAATTATTACATTTAAGTGTTGGACGTAAACCAGTATTGCGACTATTTCGAATTAAACAATAGACCACAATATTATTGTCAAAGGCTACTAGCTTTGAAATTGACTACCGGTCTTTTATTACGTCTACCTCATCCGAATACAACGCAACTATTTGATATGTTTTCACTAAATACTCGACCTTCAAGTGNNNNNNNNNNTCAATTGTTAGATCAGTCAGATGAGAATCTATCCGTTAAAAAACAAGTTCCAGCTTATTTTGCCTACTTAAGATCTGCTTCGAAATTAATTAGTCGGGAATTTCGTCAGCGTGAACGATTAGCTTTTACAGCAGCTTCATCATTAGCTNNNNNNNNCAACGATGATACAACAGATATGGGCGCCAGAATACGACTACGTGGTATGCATCTTTCTAAAGAACTTACTGCTAGAGCGAAATCAAGACGAAGAAGAGCACAGGCTCGCCTCCGTCGTGCACTCATGTCAGGTACAATTTCTGTATCAGCTGGAATGGCAAAGGCAGGACCTGATCAATTAGTTGAATTAATTGAGTCAACTGAATCTGCTCTTACCCAAGAACTTGGTGGTGGAAATCATCAACTCATTCAGATTATATGCAGTCGTGCATCGTTAGGCGCTCGTGTTATTCGAGAACGACGTAAGATGCATAAGGTCACTCGTAATGCTCTTGGTGTAGCATGGAATGGTCCAGTGAAAAAGAAATCCAAGTTATTAGATGTAGCATCTGAACCTTTGGAAATGAATAATTTCAGTGCGGACGAGGTTGACACATCTAATCGGTTGCAAAAAAAAGAATTATCTTCGGATGAAGCCTCTGTAGAACGTAATCAAAAAGCCACACCGCACGAGAAAACAAAGAAACCGCGAATAAGTTTGTGAAAGCATTTTGTAACCCTGTTTTTTGTCTACAATAAATATAAATCGATTAATTGTAAAAAAAAAAAAAAAA] [+] EMBL CD113774 [ACCTGGTTTAAGAATTATCTGGTTAAATGTACGATCAGCTTTGTTTAAAAAATTACAGAGGAATAAATCAAATTTAAACAAAGTGTTGCAAAGAATACTAACTGGTTTATTATTTCAATTGGCAGTTGATGCACGTGTACCTATTTCAGAAGAATGGTCAAATGCGTTGTTATCTAATTTGATTTATCTTGGACAATTATTACATTTAAGTGTTGGACGTAAACCAGTATTGCGACTATTTC ] [+] EMBL CD080903 [ ATTATTACATTTAAGTGTTGGACGTAAACCAGTATTGAGAATAGGATGAATTAAACAATAGACCACAATATTATTGTCAAAGGCTACTAGCTTTGAAATTGACTACCGGTCTTTTATTACGTCTACCTCATCCGAATACAACGCAACTATTTGATATGTTTTCACTAAATACTCGACCTTCAAGTGNNNNNNNNNNTCAATTGTTAGATCAGTCAGATGAGAATCTATCCGTTAAAAAACAAGTTCCAGCTTATTTTGCCTACTTAAGATCTGCTTCGAAATTAATTAGTCGGGAATTTCGTCAGCGTGAACGATTAGCTTTTACAGCAGCTTCATCATTAGCTNNNNNNNNCAACGATGATACAACAGATATGGGCGCCAGAATACGACTACGTGGTATGCATCTTTCTAAAGAACTTACTGCTAGAGCGAAATCAAGACGAAGAAGAGCACAGGCTCGCCTCCGTCGTGCACTCATGTCAGGTACAATTTCTGTATCAGCTGGAATGGCAAAGGCAGGACCTGATCAATTAGTTGAATTAATTGAGTCAACTGAATCTGCTCTTACCCAAGAACTTGGTGGTGGAAATCATCAACTCATTCAGATTATATGCAGTCGTGCATCGTTAGGCGCTC ] [-] EMBL CD190384 [ GGACCTGATCAATTAGTTGAATTAATTGAGTCAACTGAATCTGCTCTTACCCAAGAACTTGGTGGTGGAAATCATCAACTCATTCAGATTATACGCAGTCGTGCATCGTTAGGCGCTCGTGTTATTCGAGAACGACGTAAGATGCATAAGGTCACTCGTAATGCTCTTGGTGTAGCATGGAATGGTCCAGTGAAAAAGAAATCCAAGTTATTAGATGTAGCATCTGAACCTTTGGAAATGAATAATTTCAGTGCGGACGAGGTTGACACATCTAATCGGTTGCAAAAAAAAGAA ] [-] EMBL AI395238 [ TCAACTCATTCAGATTATATGCAGTCGTGCATCGTTAGGCGCTCGTGTTATTCGAGAACGACGTAAGATGCATAAGGTCACTCGTAATGCTCTTGGTGTAGCATGGAATGGTCCAGTGAAAAAGAAATCCAAGTTATTAGATGTAGCATCTGAACCTTTGGAAATGAATAATTTCAGTGCGGACGAGGTTGACACATCTAATCGGTTGCAAAAAAGAAAATTATCTTCGGATGAAGCCTCTGTAGAACGTAATCAAAAAGCCACACCGCACGAGAAAACAAAGAAACCGCGAATAAGTTTGTGAAAGCATTTTGTAACCCTGTTTTTTGTCTACAATAAATATAAATCGATTAATTGTAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8882#0 ACCAGACAATTGAATCTGGATTATGAATTATCTGGTTTAAATGTACGATCAGCTTTGTTT 60 consensus_8882#1 -------------ACCTGGTTTAAGAATTATCTGGTT-AAATGTACGATCAGCTTTGTTT 46 * **** *** ************* ********************** consensus_8882#0 AAAAAATTACAGAGGAATAAATCAAATTTAAACAAAGTGTTGCAAAGAATACTAACTGGT 120 consensus_8882#1 AAAAAATTACAGAGGAATAAATCAAATTTAAACAAAGTGTTGCAAAGAATACTAACTGGT 106 ************************************************************ consensus_8882#0 TTATTATTTCAATTGGAAGTTGATGCACGTGTACCTATTTCAGAAGAATGGTCAAATGCG 180 consensus_8882#1 TTATTATTTCAATTGGCAGTTGATGCACGTGTACCTATTTCAGAAGAATGGTCAAATGCG 166 **************** ******************************************* consensus_8882#0 TTGTTATCTAATTTGATTTATCTTGGACAATTATTACGTTTAAGTGTTGGACGTAAACCA 240 consensus_8882#1 TTGTTATCTAATTTGATTTATCTTGGACAATTATTACATTTAAGTGTTGGACGTAAACCA 226 ************************************* ********************** consensus_8882#0 GTATTGAGAATATTTCGTATTGCTAATAAAATTGCATTGGATGAATTAAACAATAGACCA 300 consensus_8882#1 GTATTGCGACTATTTCG--------------------------AATTAAACAATAGACCA 260 ****** ** ******* ***************** consensus_8882#0 CAATATTATTGTCAAAGGCTACTAGCTTTGAAATTGACTACCGGTCTTTTATTACGTCTA 360 consensus_8882#1 CAATATTATTGTCAAAGGCTACTAGCTTTGAAATTGACTACCGGTCTTTTATTACGTCTA 320 ************************************************************ consensus_8882#0 CCTCATCCGAATACAACGCAACTATTTGATATGTTTTCACTAAATACTCGACCTTCAAGT 420 consensus_8882#1 CCTCATCCGAATACAACGCAACTATTTGATATGTTTTCACTAAATACTCGACCTTCAAGT 380 ************************************************************ consensus_8882#0 GATTCTGATAATCAATTGTTAGATCAGTCAGATGAGAATCTATCCGTTAAAAAACAAGTT 480 consensus_8882#1 GNNNNNNNNNNTCAATTGTTAGATCAGTCAGATGAGAATCTATCCGTTAAAAAACAAGTT 440 * ************************************************* consensus_8882#0 CCAGCTTATTTTGGCTACTTAAGATCTGGTTCGAAATTAGTTAGTCGGGAATTTCGTCAG 540 consensus_8882#1 CCAGCTTATTTTGCCTACTTAAGATCTGCTTCGAAATTAATTAGTCGGGAATTTCGTCAG 500 ************* ************** ********** ******************** consensus_8882#0 CGTGAACGATTAGCTTTTACAGCAGCTTCATCATTAGCTTCAGCTGTCAACGATGATACA 600 consensus_8882#1 CGTGAACGATTAGCTTTTACAGCAGCTTCATCATTAGCTNNNNNNNNCAACGATGATACA 560 *************************************** ************* consensus_8882#0 ACAGATATGGGCGCCAGAATACGACTACGTGGTATGCATCTTTCTAAAGAACTTACTGCT 660 consensus_8882#1 ACAGATATGGGCGCCAGAATACGACTACGTGGTATGCATCTTTCTAAAGAACTTACTGCT 620 ************************************************************ consensus_8882#0 AGAGCGAAATCAAGACGAAGAAGAGCACAGGCTCGCCTCCGTCGTGCACTCATGTCAGGT 720 consensus_8882#1 AGAGCGAAATCAAGACGAAGAAGAGCACAGGCTCGCCTCCGTCGTGCACTCATGTCAGGT 680 ************************************************************ consensus_8882#0 ACAATTAGACCAGAGAGTGCGAATAGCCTTGTTGCTTCTGTATCAGCTGGAATGGCAAAG 780 consensus_8882#1 ACAATT------------------------------TCTGTATCAGCTGGAATGGCAAAG 710 ****** ************************ consensus_8882#0 GCAGGACCTGATCAATTAGTTGAATTAATTGAGTCAACTGAATCTGCTCTTACCCAAGAA 840 consensus_8882#1 GCAGGACCTGATCAATTAGTTGAATTAATTGAGTCAACTGAATCTGCTCTTACCCAAGAA 770 ************************************************************ consensus_8882#0 CTTGGTGGTGGAAATCATCAACTCATTCAGATTATATGCAGTCGTGCATCGTTAGGCGCT 900 consensus_8882#1 CTTGGTGGTGGAAATCATCAACTCATTCAGATTATATGCAGTCGTGCATCGTTAGGCGCT 830 ************************************************************ consensus_8882#0 CGTGTTATTCGAGAACGACGTAAGATGCATAAGGTCACTCGTAATGCTCTTGGTGTAGCA 960 consensus_8882#1 CGTGTTATTCGAGAACGACGTAAGATGCATAAGGTCACTCGTAATGCTCTTGGTGTAGCA 890 ************************************************************ consensus_8882#0 TGGAATGGTCCAGTGAAAAAGAAATCCAAGTTATTAGATGTAGCATCTGAACCTTTGGAA 1020 consensus_8882#1 TGGAATGGTCCAGTGAAAAAGAAATCCAAGTTATTAGATGTAGCATCTGAACCTTTGGAA 950 ************************************************************ consensus_8882#0 ATGAATAATTTCAGTGCGGACGAGGTTGACACATCTAATCGGTTGCAAAAAAGAAAATTA 1080 consensus_8882#1 ATGAATAATTTCAGTGCGGACGAGGTTGACACATCTAATCGGTTGCAAAAAAAAGAATTA 1010 **************************************************** * ***** consensus_8882#0 TCTTCGGATGAAGCCTCTGTAGAACGTAATCAAAAAGCCACCCCGCACGAGAAAACAAAG 1140 consensus_8882#1 TCTTCGGATGAAGCCTCTGTAGAACGTAATCAAAAAGCCACACCGCACGAGAAAACAAAG 1070 ***************************************** ****************** consensus_8882#0 AAACCGCGAATAAGTTTGTGAAAGCATTTTGTAACCCTGTTTTTTGTCTACAATAAATAT 1200 consensus_8882#1 AAACCGCGAATAAGTTTGTGAAAGCATTTTGTAACCCTGTTTTTTGTCTACAATAAATAT 1130 ************************************************************ consensus_8882#0 AAATCG------------------------- 1206 consensus_8882#1 AAATCGATTAATTGTAAAAAAAAAAAAAAAA 1161 ****** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||