These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 925 fasta sequence [GCTGTTCAATCGTGGTGTGACTCCTGTGAGCAGTGAGACGAGCTTCCCAAGACTGATTTTAGTCTGTCAAAGTTACTGGCGAAATTTTCGAAGGATCAATGCAAGAGCTGCATCTTTTCACATATGAAGACAGTCTACTTTAGTTGAGACCCAGATCCAAAGGGAAAATCAGTTCATCATTTCTGCTCAATAAGAATCACTGCATGAATTAAACAATTTTTAGCAATAATAACAAATAACCGTATGGTGAAGTCAAGTGTGGCATTATTGTGCAAAAGTACTTCAGCGTTGAAGAGACATAAGATCTATGAGATATCTGAAAAGTACTTGAAAGAAATTACACACTTATACCTAAATGGTAAAAATCTAGATGAACTGGGTGATGAAATGGCTCTTTGCCAGTGCCTAACTGTTCTCTACCTATATGACAATAAATTGAAATCTATACCAAAATACTTAAACCTATCCCAGTTGACACATTTATATCTTCAAAATAATCACATAAGTCGTATAGAAAACTTGAACTCATTGGAGAAGTTAGAAAAGCTTTTCCTCAGCCGAAATTGTATCAGTATAATTGAAGGCTTGGAAGGATTAACCCGATTACAAGAATTACGCATTGACAACCAGAATTTGGATCCAGGCGAAAGTTTAATCTTTGATGATCGTAGTTTGAATTCTGTAGCTAATAGTCTTATATGCTTGGATGTATCAGGTAACAAATTGGACACCCTACAAGATTTAAGTAATCTTCATGCCTTAATCTCTTTGAATGTATCGAATAACTCCATACAATCTATCCATGATCTATCTACATCACTGAATAAATGGTCAAACCTTAAAGAGTTCCATATACAAGGCAATCCTGTCATGAAAACAGCTCGAGCACGAGATGTCATCATTGTAACTGCAAAACGTCTGGAAA] [+] EMBL CD127765 [GCTGTTCAATCGTGGTGTGACTCCTGTGAGCAGTGAGACGAGCTTCCCAAGACTGATTTTAGTCTGTCAAAGTTACTGGCGAAATTTTCGAAGGATCAATGCAAGAGCTGCATCTTTTCACATATGAAGACAGTCTACTTTAGTTGAGACCCAGATCCAAAGGGAAAATCAGTTCATCATTTCTGCTCAATAAGAATCACTGCATGAATTAAACAATTTTTAGCAATAATAACAAATAACCGTATGGTGAAGTCAAGTGTGGCATTATTGTGCAAAAGTACTTCAGCGTTGAAGAGACATAAGATCTATGAGATATCTGAAAAGTACTTGAAAGAAATTACACACTTATACCTAAATGGTAAAAATCTAGATGAACTGGGTGATGAAATGGCTCTTTGCCAGTG ] [-] EMBL CD133613 [ cgCTGCATGAATTGAACAATTTTTAGCAATAATAACAAATAACCGTATGGTGAAGTCAAGTGTGGCATTATTGTGCAAAAGTACTTCAGCGTTGAAGAGACATAAGATCTATGAGATATCTGAAAAGTACTTGAAAGAAATTACACACTTATACCTAAATGGTAAAAATCTAGATGAACTGGGTGATGAAATGGCTCTTTGCCAGTGCCTAACTGTTCTCTACCTATATGACAATAAATTGAAATCTATACCAAAATACTT ] [-] EMBL CD133710 [ gCCGTATGGTGAAGTCAAGTGTGGCATTATTGTGCAAAAGTACTTCAGCGTTGAAGAGACATAAGATCTATGAGATATCTGAAAAGTACTTGAAAGAAATTACACACTTATACCT AATGGTAAAAATCTAGATGAACTGGGTGATGAAATGGCTCTTTGCCAGTGCCTAACTGTTCTCTACCTATATGACAATAAATTGAAATCTATACCAAAATACTT ] [-] EMBL BG930677 [ CGTTGAAGAGACATAAGATCTATGAGATATCTGAAAAGTACTTGAAAGAAATTACACACTTATACCTAAATGGTAAAAATCTAGATGAACTGGGTGATGAAATGGCTCTTTGCCAGTGCCTAACTGTTCTCTACCTATATGACAATAAATTGAAATCTATACCAAAATACTTAAACCTATCCCAGTTGACACATTTATATCTTCAAAATAATCACATAAGTCGTATAGAAAACTTGAACTCATTGGAGAAGTTAGAAAAGCTTTTCCTCAGCCGAAATTGTATCAGTATAATTGAAGGCTTGGAAGGATTAACCCGATTACAAGAATTACGCATTGACAACCAGAATTTGGATCCAGGCGAAAGTTTAATCTTTGATGA ] [-] EMBL CD146064 [ TCTACCTATATGACAATAAATTGAAATCTATACCAAAATACTTAAACCTATCCCAGTTGACACATTTATATCTTCAAAATAATCACATAAGTCGTATAGAAAACTTGAACTCATTGGAGAAGTTAGAAAAGCTTTTCCTCAGCCGAAATTGTATCAGTATAATTGAGGGCTTGGAAGGATTAACCCGATTAC ] [+] EMBL CD062230 [ ACCTATATGACAATAAATTGAAATCTATACCAAAATACTTAAACCTATCCCAGTTGACACATTTATATCTTCAAAATAATCACATAAGTCGTATAGAAAACTTGAACTCATTGGAGAAGTTAGAAAAGCTTTTCCTCAGCCGAAATTGTATCAGTATAATTGAAGGCTTGGAAGGATTAACCCGATTACAAGAATTACGCATTGACAACCAGAATTTGGATCCAGGCGAAAGTTTAATCTTTGATGATCGTAGTTTGAATTCTGTAGCTAATAGTCTTATATGCTTGGATGTATCAGGTAACAAATTGGACACCCTACAAGATTTAAGTAATCTTCATGCCTTAATCTCTTTGAATGTATCGAATAACTCCATACAATCTATCCATGATCTATCTACATCACTGAATAAATGGTCAAACCTTAAAGAGTTCCATATACAAGGCAATCCTGTCATGAAAACAGCTCGAGCACGAGATGTCATCATTGTAACTGCAAAACGTCTGGAAA] consensusID : consensus_8883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence [GGTATTGAGTGCTGTGAGAGCATTCGAGAGGGAGAGTAGACTCTCCCCACTCTCGGCGTACCAGGCATTTGGGGGCTTGGTTAAATAACCGTTGTTTAATTTTGAGACGATCCCAACTGAATAATCTGTTTCTAATTTTGACTTTCTACCTCCCCCCCTTAATCTCTTATCGTGTAACTGTTTCCGTGTAAAAATACCCCAACTTGATAGAATAGTCTTATATGCTTGGATGTATCAGGTAACAAATTGGACACCCTACAAGATTTAAGTAATCTTCATGCCTTAATCTCTTTGAATGTATCGAATAACTCCATACAATCTAT] [+] EMBL CD064600 [GGTATTGAGTGCTGTGAGAGCATTCGAGAGGGAGAGTAGACTCTCCCCACTCTCGGCGTACCAGGCATTTGGGGGCTTGGTTAAATAACCGTTGTTTAATTTTGAGACGATCCCAACTGAATAATCTGTTTCTAATTTTGACTTTCTACCTCCCCCCCTTAATCTCTTATCGTGTAACTGTTTCCGTGTAAAAATACCCCAACTTGATAGAATAGTCTTATATGCTTGGATGTATCAGGTAACAAATTGGACACCCTACAAGATTTAAGTAATCTTCATGCCTTAATCTCTTTGAATGTATCGAATAACTCCATACAATCTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8883#0 GCTGTTCAATCGTGGTGTGACTCCTGTGAGCAGTGAGACGAGCTTCCCAAGACTGATTTT 60 consensus_8883#1 ------------------------------------------------------------ consensus_8883#0 AGTCTGTCAAAGTTACTGGCGAAATTTTCGAAGGATCAATGCAAGAGCTGCATCTTTTCA 120 consensus_8883#1 ------------------------------------------------------------ consensus_8883#0 CATATGAAGACAGTCTACTTTAGTTGAGACCCAGATCCAAAGGGAAAATCAGTTCATCAT 180 consensus_8883#1 ------------------------------------------------------------ consensus_8883#0 TTCTGCTCAATAAGAATCACTGCATGAATTAAACAATTTTTAGCAATAATAACAAATAAC 240 consensus_8883#1 ------------------------------------------------------------ consensus_8883#0 CGTATGGTGAAGTCAAGTGTGGCATTATTGTGCAAAAGTACTTCAGCGTTGAAGAGACAT 300 consensus_8883#1 ------------------------------------------------------------ consensus_8883#0 AAGATCTATGAGATATCTGAAAAGTACTTGAAAGAAATTACACACTTATACCTAAATGGT 360 consensus_8883#1 ------------------------------------------------------------ consensus_8883#0 AAAAATCTAGATGAACTGGGTGATGAAATGGCTCTTTGCCAGTGCCTAACTGTTCTCTAC 420 consensus_8883#1 ------------------------------------------------------------ consensus_8883#0 CTATATGACAATAAATTGAAATCTATACCAAAATACTTAAACCTATCCCAGTTGACACAT 480 consensus_8883#1 -------------------------------------------------------GGTAT 5 ** consensus_8883#0 TTATATCTTCAAAATAATCACATAAGTCGTATAGAAAACTTGAACTCATTGGAGAAGTTA 540 consensus_8883#1 TGAGTGCTGTGAGAGCATTCGAGAGGGAGAGTAGACTCTCCCCACTC-TCGGCGTACCAG 64 * * ** * * ** * * * * **** **** * ** * * consensus_8883#0 GAA----AAGCTTTTCCTCAGCCGAAATTGTATCAGTATAATTGAAGGCTTGGAAGGATT 596 consensus_8883#1 GCATTTGGGGGCTTGGTTAAATAACCGTTGTTTAATTTTGA--GACGATCCCAACTGAAT 122 * * * ** * * **** * * * * * ** * * ** * consensus_8883#0 AACCCGATTACAAGAATTACGCATTGACAACCAGAATTTGGATCCAGGCGAAAGTTTAAT 656 consensus_8883#1 AATCTGTTTCTAATTTTGACTTTCTACCTCCCCCCCTTAATCTCTTATCGTGTAACTGTT 182 ** * * ** ** * ** * * ** ** ** ** * * consensus_8883#0 CTTTGATGATCGTAGTTTGAATTCTGTAGCTAATAGTCTTATATGCTTGGATGTATCAGG 716 consensus_8883#1 TCCGTGTAAAAATA-CCCCAACTTGATAG--AATAGTCTTATATGCTTGGATGTATCAGG 239 * * ** ** * *** ***************************** consensus_8883#0 TAACAAATTGGACACCCTACAAGATTTAAGTAATCTTCATGCCTTAATCTCTTTGAATGT 776 consensus_8883#1 TAACAAATTGGACACCCTACAAGATTTAAGTAATCTTCATGCCTTAATCTCTTTGAATGT 299 ************************************************************ consensus_8883#0 ATCGAATAACTCCATACAATCTATCCATGATCTATCTACATCACTGAATAAATGGTCAAA 836 consensus_8883#1 ATCGAATAACTCCATACAATCTAT------------------------------------ 323 ************************ consensus_8883#0 CCTTAAAGAGTTCCATATACAAGGCAATCCTGTCATGAAAACAGCTCGAGCACGAGATGT 896 consensus_8883#1 ------------------------------------------------------------ consensus_8883#0 CATCATTGTAACTGCAAAACGTCTGGAAA 925 consensus_8883#1 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||