cluster # 8883

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 8883 cluster # 8883 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8883#0 length = 925 sequences # 6

consensus_8883#1 length = 323 sequences # 1

consensusID : consensus_8883#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 925
fasta sequence

                              [GCTGTTCAATCGTGGTGTGACTCCTGTGAGCAGTGAGACGAGCTTCCCAAGACTGATTTTAGTCTGTCAAAGTTACTGGCGAAATTTTCGAAGGATCAATGCAAGAGCTGCATCTTTTCACATATGAAGACAGTCTACTTTAGTTGAGACCCAGATCCAAAGGGAAAATCAGTTCATCATTTCTGCTCAATAAGAATCACTGCATGAATTAAACAATTTTTAGCAATAATAACAAATAACCGTATGGTGAAGTCAAGTGTGGCATTATTGTGCAAAAGTACTTCAGCGTTGAAGAGACATAAGATCTATGAGATATCTGAAAAGTACTTGAAAGAAATTACACACTTATACCTAAATGGTAAAAATCTAGATGAACTGGGTGATGAAATGGCTCTTTGCCAGTGCCTAACTGTTCTCTACCTATATGACAATAAATTGAAATCTATACCAAAATACTTAAACCTATCCCAGTTGACACATTTATATCTTCAAAATAATCACATAAGTCGTATAGAAAACTTGAACTCATTGGAGAAGTTAGAAAAGCTTTTCCTCAGCCGAAATTGTATCAGTATAATTGAAGGCTTGGAAGGATTAACCCGATTACAAGAATTACGCATTGACAACCAGAATTTGGATCCAGGCGAAAGTTTAATCTTTGATGATCGTAGTTTGAATTCTGTAGCTAATAGTCTTATATGCTTGGATGTATCAGGTAACAAATTGGACACCCTACAAGATTTAAGTAATCTTCATGCCTTAATCTCTTTGAATGTATCGAATAACTCCATACAATCTATCCATGATCTATCTACATCACTGAATAAATGGTCAAACCTTAAAGAGTTCCATATACAAGGCAATCCTGTCATGAAAACAGCTCGAGCACGAGATGTCATCATTGTAACTGCAAAACGTCTGGAAA]

[+] EMBL CD127765             [GCTGTTCAATCGTGGTGTGACTCCTGTGAGCAGTGAGACGAGCTTCCCAAGACTGATTTTAGTCTGTCAAAGTTACTGGCGAAATTTTCGAAGGATCAATGCAAGAGCTGCATCTTTTCACATATGAAGACAGTCTACTTTAGTTGAGACCCAGATCCAAAGGGAAAATCAGTTCATCATTTCTGCTCAATAAGAATCACTGCATGAATTAAACAATTTTTAGCAATAATAACAAATAACCGTATGGTGAAGTCAAGTGTGGCATTATTGTGCAAAAGTACTTCAGCGTTGAAGAGACATAAGATCTATGAGATATCTGAAAAGTACTTGAAAGAAATTACACACTTATACCTAAATGGTAAAAATCTAGATGAACTGGGTGATGAAATGGCTCTTTGCCAGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD133613             [                                                                                                                                                                                                     cgCTGCATGAATTGAACAATTTTTAGCAATAATAACAAATAACCGTATGGTGAAGTCAAGTGTGGCATTATTGTGCAAAAGTACTTCAGCGTTGAAGAGACATAAGATCTATGAGATATCTGAAAAGTACTTGAAAGAAATTACACACTTATACCTAAATGGTAAAAATCTAGATGAACTGGGTGATGAAATGGCTCTTTGCCAGTGCCTAACTGTTCTCTACCTATATGACAATAAATTGAAATCTATACCAAAATACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD133710             [                                                                                                                                                                                                                                              gCCGTATGGTGAAGTCAAGTGTGGCATTATTGTGCAAAAGTACTTCAGCGTTGAAGAGACATAAGATCTATGAGATATCTGAAAAGTACTTGAAAGAAATTACACACTTATACCT AATGGTAAAAATCTAGATGAACTGGGTGATGAAATGGCTCTTTGCCAGTGCCTAACTGTTCTCTACCTATATGACAATAAATTGAAATCTATACCAAAATACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL BG930677             [                                                                                                                                                                                                                                                                                              CGTTGAAGAGACATAAGATCTATGAGATATCTGAAAAGTACTTGAAAGAAATTACACACTTATACCTAAATGGTAAAAATCTAGATGAACTGGGTGATGAAATGGCTCTTTGCCAGTGCCTAACTGTTCTCTACCTATATGACAATAAATTGAAATCTATACCAAAATACTTAAACCTATCCCAGTTGACACATTTATATCTTCAAAATAATCACATAAGTCGTATAGAAAACTTGAACTCATTGGAGAAGTTAGAAAAGCTTTTCCTCAGCCGAAATTGTATCAGTATAATTGAAGGCTTGGAAGGATTAACCCGATTACAAGAATTACGCATTGACAACCAGAATTTGGATCCAGGCGAAAGTTTAATCTTTGATGA                                                                                                                                                                                                                                                                    ]
[-] EMBL CD146064             [                                                                                                                                                                                                                                                                                                                                                                                                                               TCTACCTATATGACAATAAATTGAAATCTATACCAAAATACTTAAACCTATCCCAGTTGACACATTTATATCTTCAAAATAATCACATAAGTCGTATAGAAAACTTGAACTCATTGGAGAAGTTAGAAAAGCTTTTCCTCAGCCGAAATTGTATCAGTATAATTGAGGGCTTGGAAGGATTAACCCGATTAC                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD062230             [                                                                                                                                                                                                                                                                                                                                                                                                                                  ACCTATATGACAATAAATTGAAATCTATACCAAAATACTTAAACCTATCCCAGTTGACACATTTATATCTTCAAAATAATCACATAAGTCGTATAGAAAACTTGAACTCATTGGAGAAGTTAGAAAAGCTTTTCCTCAGCCGAAATTGTATCAGTATAATTGAAGGCTTGGAAGGATTAACCCGATTACAAGAATTACGCATTGACAACCAGAATTTGGATCCAGGCGAAAGTTTAATCTTTGATGATCGTAGTTTGAATTCTGTAGCTAATAGTCTTATATGCTTGGATGTATCAGGTAACAAATTGGACACCCTACAAGATTTAAGTAATCTTCATGCCTTAATCTCTTTGAATGTATCGAATAACTCCATACAATCTATCCATGATCTATCTACATCACTGAATAAATGGTCAAACCTTAAAGAGTTCCATATACAAGGCAATCCTGTCATGAAAACAGCTCGAGCACGAGATGTCATCATTGTAACTGCAAAACGTCTGGAAA]




>consensus_8883#0
GCTGTTCAATCGTGGTGTGACTCCTGTGAGCAGTGAGACGAGCTTCCCAAGACTGATTTT
AGTCTGTCAAAGTTACTGGCGAAATTTTCGAAGGATCAATGCAAGAGCTGCATCTTTTCA
CATATGAAGACAGTCTACTTTAGTTGAGACCCAGATCCAAAGGGAAAATCAGTTCATCAT
TTCTGCTCAATAAGAATCACTGCATGAATTAAACAATTTTTAGCAATAATAACAAATAAC
CGTATGGTGAAGTCAAGTGTGGCATTATTGTGCAAAAGTACTTCAGCGTTGAAGAGACAT
AAGATCTATGAGATATCTGAAAAGTACTTGAAAGAAATTACACACTTATACCTAAATGGT
AAAAATCTAGATGAACTGGGTGATGAAATGGCTCTTTGCCAGTGCCTAACTGTTCTCTAC
CTATATGACAATAAATTGAAATCTATACCAAAATACTTAAACCTATCCCAGTTGACACAT
TTATATCTTCAAAATAATCACATAAGTCGTATAGAAAACTTGAACTCATTGGAGAAGTTA
GAAAAGCTTTTCCTCAGCCGAAATTGTATCAGTATAATTGAAGGCTTGGAAGGATTAACC
CGATTACAAGAATTACGCATTGACAACCAGAATTTGGATCCAGGCGAAAGTTTAATCTTT
GATGATCGTAGTTTGAATTCTGTAGCTAATAGTCTTATATGCTTGGATGTATCAGGTAAC
AAATTGGACACCCTACAAGATTTAAGTAATCTTCATGCCTTAATCTCTTTGAATGTATCG
AATAACTCCATACAATCTATCCATGATCTATCTACATCACTGAATAAATGGTCAAACCTT
AAAGAGTTCCATATACAAGGCAATCCTGTCATGAAAACAGCTCGAGCACGAGATGTCATC
ATTGTAACTGCAAAACGTCTGGAAA

consensusID : consensus_8883#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence

                              [GGTATTGAGTGCTGTGAGAGCATTCGAGAGGGAGAGTAGACTCTCCCCACTCTCGGCGTACCAGGCATTTGGGGGCTTGGTTAAATAACCGTTGTTTAATTTTGAGACGATCCCAACTGAATAATCTGTTTCTAATTTTGACTTTCTACCTCCCCCCCTTAATCTCTTATCGTGTAACTGTTTCCGTGTAAAAATACCCCAACTTGATAGAATAGTCTTATATGCTTGGATGTATCAGGTAACAAATTGGACACCCTACAAGATTTAAGTAATCTTCATGCCTTAATCTCTTTGAATGTATCGAATAACTCCATACAATCTAT]

[+] EMBL CD064600             [GGTATTGAGTGCTGTGAGAGCATTCGAGAGGGAGAGTAGACTCTCCCCACTCTCGGCGTACCAGGCATTTGGGGGCTTGGTTAAATAACCGTTGTTTAATTTTGAGACGATCCCAACTGAATAATCTGTTTCTAATTTTGACTTTCTACCTCCCCCCCTTAATCTCTTATCGTGTAACTGTTTCCGTGTAAAAATACCCCAACTTGATAGAATAGTCTTATATGCTTGGATGTATCAGGTAACAAATTGGACACCCTACAAGATTTAAGTAATCTTCATGCCTTAATCTCTTTGAATGTATCGAATAACTCCATACAATCTAT]




>consensus_8883#1
GGTATTGAGTGCTGTGAGAGCATTCGAGAGGGAGAGTAGACTCTCCCCACTCTCGGCGTA
CCAGGCATTTGGGGGCTTGGTTAAATAACCGTTGTTTAATTTTGAGACGATCCCAACTGA
ATAATCTGTTTCTAATTTTGACTTTCTACCTCCCCCCCTTAATCTCTTATCGTGTAACTG
TTTCCGTGTAAAAATACCCCAACTTGATAGAATAGTCTTATATGCTTGGATGTATCAGGT
AACAAATTGGACACCCTACAAGATTTAAGTAATCTTCATGCCTTAATCTCTTTGAATGTA
TCGAATAACTCCATACAATCTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8883#0      GCTGTTCAATCGTGGTGTGACTCCTGTGAGCAGTGAGACGAGCTTCCCAAGACTGATTTT 60
consensus_8883#1      ------------------------------------------------------------
                                                                                  

consensus_8883#0      AGTCTGTCAAAGTTACTGGCGAAATTTTCGAAGGATCAATGCAAGAGCTGCATCTTTTCA 120
consensus_8883#1      ------------------------------------------------------------
                                                                                  

consensus_8883#0      CATATGAAGACAGTCTACTTTAGTTGAGACCCAGATCCAAAGGGAAAATCAGTTCATCAT 180
consensus_8883#1      ------------------------------------------------------------
                                                                                  

consensus_8883#0      TTCTGCTCAATAAGAATCACTGCATGAATTAAACAATTTTTAGCAATAATAACAAATAAC 240
consensus_8883#1      ------------------------------------------------------------
                                                                                  

consensus_8883#0      CGTATGGTGAAGTCAAGTGTGGCATTATTGTGCAAAAGTACTTCAGCGTTGAAGAGACAT 300
consensus_8883#1      ------------------------------------------------------------
                                                                                  

consensus_8883#0      AAGATCTATGAGATATCTGAAAAGTACTTGAAAGAAATTACACACTTATACCTAAATGGT 360
consensus_8883#1      ------------------------------------------------------------
                                                                                  

consensus_8883#0      AAAAATCTAGATGAACTGGGTGATGAAATGGCTCTTTGCCAGTGCCTAACTGTTCTCTAC 420
consensus_8883#1      ------------------------------------------------------------
                                                                                  

consensus_8883#0      CTATATGACAATAAATTGAAATCTATACCAAAATACTTAAACCTATCCCAGTTGACACAT 480
consensus_8883#1      -------------------------------------------------------GGTAT 5
                                                                                **

consensus_8883#0      TTATATCTTCAAAATAATCACATAAGTCGTATAGAAAACTTGAACTCATTGGAGAAGTTA 540
consensus_8883#1      TGAGTGCTGTGAGAGCATTCGAGAGGGAGAGTAGACTCTCCCCACTC-TCGGCGTACCAG 64
                      * *   **   * *  **   * * *  *  ****        **** * ** * *    

consensus_8883#0      GAA----AAGCTTTTCCTCAGCCGAAATTGTATCAGTATAATTGAAGGCTTGGAAGGATT 596
consensus_8883#1      GCATTTGGGGGCTTGGTTAAATAACCGTTGTTTAATTTTGA--GACGATCCCAACTGAAT 122
                      * *      *  **   * *       **** * * * * *  ** *      *  ** *

consensus_8883#0      AACCCGATTACAAGAATTACGCATTGACAACCAGAATTTGGATCCAGGCGAAAGTTTAAT 656
consensus_8883#1      AATCTGTTTCTAATTTTGACTTTCTACCTCCCCCCCTTAATCTCTTATCGTGTAACTGTT 182
                      ** * * **  **   * **    *  *  **    **    **    **      *  *

consensus_8883#0      CTTTGATGATCGTAGTTTGAATTCTGTAGCTAATAGTCTTATATGCTTGGATGTATCAGG 716
consensus_8883#1      TCCGTGTAAAAATA-CCCCAACTTGATAG--AATAGTCTTATATGCTTGGATGTATCAGG 239
                            * *   **     ** *   ***  *****************************

consensus_8883#0      TAACAAATTGGACACCCTACAAGATTTAAGTAATCTTCATGCCTTAATCTCTTTGAATGT 776
consensus_8883#1      TAACAAATTGGACACCCTACAAGATTTAAGTAATCTTCATGCCTTAATCTCTTTGAATGT 299
                      ************************************************************

consensus_8883#0      ATCGAATAACTCCATACAATCTATCCATGATCTATCTACATCACTGAATAAATGGTCAAA 836
consensus_8883#1      ATCGAATAACTCCATACAATCTAT------------------------------------ 323
                      ************************                                    

consensus_8883#0      CCTTAAAGAGTTCCATATACAAGGCAATCCTGTCATGAAAACAGCTCGAGCACGAGATGT 896
consensus_8883#1      ------------------------------------------------------------
                                                                                  

consensus_8883#0      CATCATTGTAACTGCAAAACGTCTGGAAA 925
consensus_8883#1      -----------------------------