cluster # 8884

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Schistosoma mansoni
cluster # 8884 cluster # 8884 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8884#0 length = 1097 sequences # 6

consensus_8884#1 length = 444 sequences # 1

consensusID : consensus_8884#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1097
fasta sequence

                              [TTTTATGGTGGCGGGGGAGCTTCTATCGGTATAGCACGTTTGTTAGTACAAGCAATTATGGAGGAGGGTTTCTCTGAAGATGAAGCTAAATCACGTATTTTTATAATGGATTCTAAAGGTTTAATTGTTACAAGTCGTGAACTTAGTGCAGCAAAATCAGAATTCGCTCGTTCTGATTATCCTCAAATAGATTCACTTTTGGAAGCTATTCGATTCATTCGACCTTCTGTTTTGATTGGTGCTTCTGCACAAAGCGGTGCATTCACGCGTGATATTCTTCGTGAACTGTCGACAATCCATAAGACTCCTATCATATTTGTCCTGAGCAATCAATCAAATCTAGGAGAATGCACTTCCCAGATGGCTTATAAGGCTACAGAATGGCGATGTATATTTGTCAGTGGTTCTCCTTCAGAACCTGTTCGAACACCAGATAATCGTATATTAAAACCGAGTCAAGGAAATAACTGCTATGTTTTTCCAAGTTTGGTTAATGCATTATCGTTGGCTGCGATTCGTCCGCTGACCAATAAATTGTTATTGACTGCGGCAAAGAAACTATCTGAATTAGTTACAGACGATGATATACGTCAAGGTAGTATGTATCCATCAATTGCTCGATTGCCAACAA-TTACAAAAGAAGTCTCTTGCGCTATTATGGAACAAGCATACAAGGATAAAATTGCATTTTTTACTCCAGAACCAGATAATAAGATGGAATTTATTGAATCTTACTATTATGATCATAGATATATTAATTTTACACCCGACCAATATGTTTGGTAGCCATTTTGACTCATTTCTATTCCGTGTTTCCTCTATCTATTTGAACAGAACTCGATTGATTACTTAAATTTTATCTTCAAACTGGTAAGAATGATTTCAACATATGTATTGATAATGTATGGCTATTTCTTACTATCTATTCGTTTTAAAGTGTTGATCTAAATATCGATATTCGTTGTATTCATACCTTTCTTCTGTAAGACTATTTTTCTGTCAAACGGTTTGTACGATCTGTGAAAAATGTTTTTTAGTAAATAACTATACCTTTCAACTGTGGTAATTAAAAAAGTAATAACGTATGCCTTAGATGT]

[+] EMBL CD082453             [TTTTATGGTGGCGGGGGAGCTTCTATCGGTATAGCACGTTTGTTAGTACAAGCAATTATGGAGGAGGGTTTCTCTGAAGATGAAGCTAAATCACGTATTTTTATAATGGATTCTAAAGGTTTAATTGTTACAAGTCGTGAACTTAGTGCAGCAAAATCAGAATTCGCTCGTTCTGATTATCCTCAAATAGATTCACTTTTGGAAGCTATTCGATTCATTCGACCTTCTGTTTTGATTGGTGCTTCTGCACAAAGCGGTGCATTCACGCGTGATATTCTTCGTGAACTGTCGACAATCCATAAGACTCCTATCATATTTGTCCTGAGCAATCAATCAAATCTAGGAGAATGCACTTCCCAGATGGCTTATAAGGCTACAGAATGGCGATGTATATTTGTCAGTGGTTCTCCTTCAGAACCTGTTCGAACACCAGATAATCGTATATTAAAACCGAGTCAAGGAAATAACTGCTATGTTTTTCCAAGTTTGGTTAATGCATTATCGTTGGCTGCGATTCGTCCGCTGACCAATAAATTGTTATTGACTGCGGCAAAGAAACTATCTGAATTAGTTACAGACGATGATATACGTCAAGGTAGTATGTATCCATCAATTGCTCGATTGCCAACAANTTAC AAAGAAGTCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD132086             [                                                                                                                                                                                                                                                                GTGCATTCACGCGTGATATTCTTCGTGAACTGTCGACAATCCATAAGACTCCTATCATATTTGTCCTGAGCAATCAATCAAATCTAGGAGAATGCACTTCCCAGATGGCTTATAAGGCTACAGAATGGCGATGTATATTTGTCAGTGGTTCTCCTTCAGAACCTGTTCGAACACCAGATAATCGTATATTAAAACCGAGTCAAGGAAATAACTGCTATGTTTTTCCAAGTTTGGTTAATGCATTATCGTTGGCTGCGATTCGTCCGCTGACCAATAAATTGTTATTGACTGCGGCAAAGAAACTATCTGAATTAGTTACAGACGATGATATACGTCAAGGTAGTATGTATCCATCAATTGCTCGATTGCCAACAA TTACAAAAGAAGTCTCTTGCGCTATTATGGAACAAGCATACAAGGAT                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD146347             [                                                                                                                                                                                                                                                                                                                                                       GAGAATGCACTTCCCAGATGGCTTATAAGGCTACAGAATGGCGATGTATATTTGTCAGTGGTTCTCCTTCAGAACCTGTTCGAACATCAGATAATCGTATATTAAAACCGAGTCAAGGAAATAACTGCTACGTTTTTCCGAGTTTGGTTAATGCATTATCGTTGGCTGCGATTCGTCCGCTGACCAATAAATTGTTATTGACTGCGGCAAAGAAACTATCTGAATTAGTTACAGACGATGATATACGTCAAGGTAGTATGTATCCATCAATTGCTCGATTGCCAACAA TTACAAAAGAAGTCTCTTGCGCTATTATGGAACAAGCATACAAGGATAAAATTGCATTTTTTACTCCAGAACCAGATAATAA                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD076051             [                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGTATATTANAACCGAGTCAAGGAAATAACTGCTATGTTTTTCCAAGTTTGGTTAATGCATTATCGTTGGCTGCGATTCGTCCGCTGACCAATAAATTGTTATTGACTGCGGCAAAGAAACTATCTGAATTAGTTACAGACGATGATATACGTCAAGGTAGTATGTATCCATCAATTGCTCGATTGCCAACAA TTACAAAAGAAGTCTCTTGCGCTATTATGGAACAAGCATACAAGGATAAAATTGCATTTTTTACTCCAGAACCAGATAATAAGATGGAATTTATTGAATCTTACTATTATGATCATAGATATATTAATTTTACACCCGACCAATATGTTTGGTAGCCATTTTGACTCATTTCTATTCCGTGTTTCCTCTATCTATTTGAACAGAACTCGATTGATTACTTAAATTTTATCTTCAAACTGGTAAGAATGATTTCAACATATGTATTAATAATGTATGGCTATTTCTTACTATCTATTCGTTTTAAAGTGTTGATTTAAATATCGATATTCGTTGTATTCATACCTTTCTTCTGTAAGACTATTTTTCTGTCAAACGGTTTGTACGATCTGTGAAAAATGTTTTTTAGTAAATAACT                                                   ]
[-] EMBL AI977322             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 gGGTAGTATGTATCCATCAATTGCTCGATTGCCAACAA TTACAAAAGAAGTCTCTTGCGCTATTATGGAACAAGCATACAAGGATAAAATTGCATTTTTTACTCCAGAACCAGATAATAAGATGGAATTTATTGAATCTTACTATTATGATCATAGATATATTAATTTTACACCCGACCAATATGTTTGGTAGCCATTTTGACTCATTTCTATTCCGTGTTTCCTCTATCTATTTGAACAGAACTCGATTGATTACTTAAATTTTATCTTCAAACTGGTAAGAATGATTTCAACATATGTATTGATAATGTATGGCTATTTCTTACTATCTATTCGTTTTAAAGTGTTGATCTAAATATCGATATTCGTTGTATTCATACCTTTCTTCTGTAAGACTATTTTTCTGTCAAACGGTTTGTACGATCTGTGAAAAATGTTTTTTAGTAAATAACTATACCTTTCAACTGTGGTAATTAAAAAAGTAATAACGTATGCCTTAGATGT]
[-] EMBL AI977520             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TATGGAACAAGCATTCAAGGATAAAATTGCATTTTTTACTCCAGAACCAGATAATAAGATGGAATTTATTGAATCTTACTATTATGATCATAGATATATTAATTTTACACCCGACCAATATGTTTGGTAGCCATTTTGACTCATTTCTATTCCGTGTTTCCTCTATCTATTTGAACAGAACTCGATTGATTACTTAAATTTTATCTTCAAACTGGTAAGAATGATTTCAACATATGTATTGATAATGTATGGCTATTTCTTACTATCTATTCGTTTTAAAGTGTTGATCTAAATATCGATATTCGTTGTATTCATACCTTTCTTCTGTAAGACTATTTTTCTGTCAAACGGTTTGTACGATCTGTGAAAAATGTTTTTTAGTAAATAACTATACCTTTCAACTGTGGTAATTAAAAAAGTAATAACGTATGCCTTAGATGT]




>consensus_8884#0
TTTTATGGTGGCGGGGGAGCTTCTATCGGTATAGCACGTTTGTTAGTACAAGCAATTATG
GAGGAGGGTTTCTCTGAAGATGAAGCTAAATCACGTATTTTTATAATGGATTCTAAAGGT
TTAATTGTTACAAGTCGTGAACTTAGTGCAGCAAAATCAGAATTCGCTCGTTCTGATTAT
CCTCAAATAGATTCACTTTTGGAAGCTATTCGATTCATTCGACCTTCTGTTTTGATTGGT
GCTTCTGCACAAAGCGGTGCATTCACGCGTGATATTCTTCGTGAACTGTCGACAATCCAT
AAGACTCCTATCATATTTGTCCTGAGCAATCAATCAAATCTAGGAGAATGCACTTCCCAG
ATGGCTTATAAGGCTACAGAATGGCGATGTATATTTGTCAGTGGTTCTCCTTCAGAACCT
GTTCGAACACCAGATAATCGTATATTAAAACCGAGTCAAGGAAATAACTGCTATGTTTTT
CCAAGTTTGGTTAATGCATTATCGTTGGCTGCGATTCGTCCGCTGACCAATAAATTGTTA
TTGACTGCGGCAAAGAAACTATCTGAATTAGTTACAGACGATGATATACGTCAAGGTAGT
ATGTATCCATCAATTGCTCGATTGCCAACAATTACAAAAGAAGTCTCTTGCGCTATTATG
GAACAAGCATACAAGGATAAAATTGCATTTTTTACTCCAGAACCAGATAATAAGATGGAA
TTTATTGAATCTTACTATTATGATCATAGATATATTAATTTTACACCCGACCAATATGTT
TGGTAGCCATTTTGACTCATTTCTATTCCGTGTTTCCTCTATCTATTTGAACAGAACTCG
ATTGATTACTTAAATTTTATCTTCAAACTGGTAAGAATGATTTCAACATATGTATTGATA
ATGTATGGCTATTTCTTACTATCTATTCGTTTTAAAGTGTTGATCTAAATATCGATATTC
GTTGTATTCATACCTTTCTTCTGTAAGACTATTTTTCTGTCAAACGGTTTGTACGATCTG
TGAAAAATGTTTTTTAGTAAATAACTATACCTTTCAACTGTGGTAATTAAAAAAGTAATA
ACGTATGCCTTAGATGT

consensusID : consensus_8884#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence

                              [ACAGAACTGCAGCTCCCCGCGGTGGCTGTCGATCTAGAGCTAGCGGATCCCTGAGGTAGATGCATGCCGGTTAAATATGGTGTTGGGATGGACGGGTTTTCGATGGCTGCGATTCGTCCGCTGACCAATAAATTGTTATTGACTGCGGCAAAGAAACTATCTGAATTAGTTACAGACGATGATATACGTCAAGGTAGTATGTATACATCAATTGCTCGATTGCCAACAATTACAAAAGAAGTCTCTTGCGCTATTATGGAACAAGCATACAAGGATAAAATTGCATTTTTTTACTCCAGAACCAGATAATAAGATGGAATTTATTGAATCTTACTATTATGATCATAGATATATTAATTTTACACCCGACCAATATGTTTGGTAGCCATTTTGACTCATTTCTATTCCGTGTTTCCTCTATCTATTTGAACAGAACTCGATTGA]

[+] EMBL BG931682             [ACAGAACTGCAGCTCCCCGCGGTGGCTGTCGATCTAGAGCTAGCGGATCCCTGAGGTAGATGCATGCCGGTTAAATATGGTGTTGGGATGGACGGGTTTTCGATGGCTGCGATTCGTCCGCTGACCAATAAATTGTTATTGACTGCGGCAAAGAAACTATCTGAATTAGTTACAGACGATGATATACGTCAAGGTAGTATGTATACATCAATTGCTCGATTGCCAACAATTACAAAAGAAGTCTCTTGCGCTATTATGGAACAAGCATACAAGGATAAAATTGCATTTTTTTACTCCAGAACCAGATAATAAGATGGAATTTATTGAATCTTACTATTATGATCATAGATATATTAATTTTACACCCGACCAATATGTTTGGTAGCCATTTTGACTCATTTCTATTCCGTGTTTCCTCTATCTATTTGAACAGAACTCGATTGA]




>consensus_8884#1
ACAGAACTGCAGCTCCCCGCGGTGGCTGTCGATCTAGAGCTAGCGGATCCCTGAGGTAGA
TGCATGCCGGTTAAATATGGTGTTGGGATGGACGGGTTTTCGATGGCTGCGATTCGTCCG
CTGACCAATAAATTGTTATTGACTGCGGCAAAGAAACTATCTGAATTAGTTACAGACGAT
GATATACGTCAAGGTAGTATGTATACATCAATTGCTCGATTGCCAACAATTACAAAAGAA
GTCTCTTGCGCTATTATGGAACAAGCATACAAGGATAAAATTGCATTTTTTTACTCCAGA
ACCAGATAATAAGATGGAATTTATTGAATCTTACTATTATGATCATAGATATATTAATTT
TACACCCGACCAATATGTTTGGTAGCCATTTTGACTCATTTCTATTCCGTGTTTCCTCTA
TCTATTTGAACAGAACTCGATTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8884#0      TTTTATGGTGGCGGGGGAGCTTCTATCGGTATAGCACGTTTGTTAGTACAAGCAATTATG 60
consensus_8884#1      ------------------------------------------------------------
                                                                                  

consensus_8884#0      GAGGAGGGTTTCTCTGAAGATGAAGCTAAATCACGTATTTTTATAATGGATTCTAAAGGT 120
consensus_8884#1      ------------------------------------------------------------
                                                                                  

consensus_8884#0      TTAATTGTTACAAGTCGTGAACTTAGTGCAGCAAAATCAGAATTCGCTCGTTCTGATTAT 180
consensus_8884#1      ------------------------------------------------------------
                                                                                  

consensus_8884#0      CCTCAAATAGATTCACTTTTGGAAGCTATTCGATTCATTCGACCTTCTGTTTTGATTGGT 240
consensus_8884#1      ------------------------------------------------------------
                                                                                  

consensus_8884#0      GCTTCTGCACAAAGCGGTGCATTCACGCGTGATATTCTTCGTGAACTGTCGACAATCCAT 300
consensus_8884#1      ------------------------------------------------------------
                                                                                  

consensus_8884#0      AAGACTCCTATCATATTTGTCCTGAGCAATCAATCAAATCTAGGAGAATGCACTTCCCAG 360
consensus_8884#1      ------------------------------------------------------------
                                                                                  

consensus_8884#0      ATGGCTTATAAGGCTACAGAATGGCGATGTATATTTGTCAGTGGTTCTCCTTCAGAACCT 420
consensus_8884#1      --------------------------------ACAGAACTGCAGCTCCCCG-CGGTGGCT 27
                                                      *     * *  * ** **  * *   **

consensus_8884#0      GTTCGAACACCAGATAATCGTATATTAAAACCGAGTCAAGGAAATAACTGCTATGTTTTT 480
consensus_8884#1      GT-CGATCTAGAGCTAGCGGATCCCTGAGGTAGATGCATGCCGGTTA--AATATGGTGTT 84
                      ** *** *   ** **   *     * *    **  ** *    * *    **** * **

consensus_8884#0      CCAAGTTTGGTTAATGCATTATCGTTGGCTGCGATTCGTCCGCTGACCAATAAATTGTTA 540
consensus_8884#1      G------GGATGGACGGGTTTTCGATGGCTGCGATTCGTCCGCTGACCAATAAATTGTTA 138
                              * *  * *  ** *** ***********************************

consensus_8884#0      TTGACTGCGGCAAAGAAACTATCTGAATTAGTTACAGACGATGATATACGTCAAGGTAGT 600
consensus_8884#1      TTGACTGCGGCAAAGAAACTATCTGAATTAGTTACAGACGATGATATACGTCAAGGTAGT 198
                      ************************************************************

consensus_8884#0      ATGTATCCATCAATTGCTCGATTGCCAACAATTACAAAAGAAGTCTCTTGCGCTATTATG 660
consensus_8884#1      ATGTATACATCAATTGCTCGATTGCCAACAATTACAAAAGAAGTCTCTTGCGCTATTATG 258
                      ****** *****************************************************

consensus_8884#0      GAACAAGCATACAAGGATAAAATTGCATTTTTT-ACTCCAGAACCAGATAATAAGATGGA 719
consensus_8884#1      GAACAAGCATACAAGGATAAAATTGCATTTTTTTACTCCAGAACCAGATAATAAGATGGA 318
                      ********************************* **************************

consensus_8884#0      ATTTATTGAATCTTACTATTATGATCATAGATATATTAATTTTACACCCGACCAATATGT 779
consensus_8884#1      ATTTATTGAATCTTACTATTATGATCATAGATATATTAATTTTACACCCGACCAATATGT 378
                      ************************************************************

consensus_8884#0      TTGGTAGCCATTTTGACTCATTTCTATTCCGTGTTTCCTCTATCTATTTGAACAGAACTC 839
consensus_8884#1      TTGGTAGCCATTTTGACTCATTTCTATTCCGTGTTTCCTCTATCTATTTGAACAGAACTC 438
                      ************************************************************

consensus_8884#0      GATTGATTACTTAAATTTTATCTTCAAACTGGTAAGAATGATTTCAACATATGTATTGAT 899
consensus_8884#1      GATTGA------------------------------------------------------ 444
                      ******                                                      

consensus_8884#0      AATGTATGGCTATTTCTTACTATCTATTCGTTTTAAAGTGTTGATCTAAATATCGATATT 959
consensus_8884#1      ------------------------------------------------------------
                                                                                  

consensus_8884#0      CGTTGTATTCATACCTTTCTTCTGTAAGACTATTTTTCTGTCAAACGGTTTGTACGATCT 1019
consensus_8884#1      ------------------------------------------------------------
                                                                                  

consensus_8884#0      GTGAAAAATGTTTTTTAGTAAATAACTATACCTTTCAACTGTGGTAATTAAAAAAGTAAT 1079
consensus_8884#1      ------------------------------------------------------------
                                                                                  

consensus_8884#0      AACGTATGCCTTAGATGT 1097
consensus_8884#1      ------------------