cluster # 8885

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Schistosoma mansoni
cluster # 8885 cluster # 8885 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8885#0 length = 1046 sequences # 6

consensus_8885#1 length = 236 sequences # 1

consensusID : consensus_8885#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1046
fasta sequence

                              [CGGAGCCAATATTCGGCACGAGGGCAAAAATGGAAATTTGCAAAGAAGAACTTATGAATCCTATCAAACAAGATGTTAAAAATAATAAACTGCGCTATGTAAATAATGTATTTCCACATAAAGGTTATATCTGGAATTATGGTGCCCTACCTCAAACATGGGAAGATCCAAACCATGTAGATGAAAATACTAAAGCTAAAGGAGATAACGATCCTATTGATGTGTGTGAAATAGGTTCGAAAATATGGCCTCCTGGATCAATAATACCTGTCAAAGTATTAGGCATATTGGCAATGATAGATGAAGGTGAAACTGACTGGAAAGTTATAGTTATAAATGCAGCTGATCCAATGGCTGATAAACTAAATGACATTCATGATGTGGATACTCATATGCCGGGACTTCTGAAGGCTACACGAGACTGGTTTAAGTACTACAAGGTTCCTACAGGAAAGCCCGAAAATACATTTGCCTTCAATGGAGAGTTCAAGAACA-AAGAATTCGCCACAAAAATTATCTCCCAAACACATGAACAGTGGCAGAAACTGATATCTACCAAAGTTGAAGCTGGTTCTATCATACGAGCAAATGTTACTGTGAAAGGAAGTCCCTACATGGTATCAAAAGAAGATTTTCTCGATGCTTTGCAGAAGCACGACGCTTTTACACGCGGAAGTGAACCAACGG-ATCAAGCGA-TTGATCAATGGCATTTTTGCAACCCAAATATTTAATTCTGCTTCAATGGTCGACTATTATAATCATCGTTGTGAACTAATCATGGTCCACTCCACAAAAG-ATAATTGCAAATCAAAATCTACTCATCTTATAGTATTTAATAAAAAAAAACTCAGCGTATGACTGTTATTTACCTTTTTTGGTTGTAACCCT-AATACTCGTCTGTATA-GTCTATNGATATG-TTTTTTAAAAAATTATTCCAG-TAAAG-TATACAAA-ATACACATATGTTTGGGAATGAATTCTTCTTTTTCCCCCTTAAACAATTGAAGTATATAGGCGTAACCTAATTGACTAAATTGAATTTTATTTCT]

[+] EMBL CD081563             [CGGAGCCAATATTCGGCACGAGGGCAAAAATGGAAATTTGCAAAGAAGAACTTATGAATCCTATCAAACAAGATGTTAAAAATAATAAACTGCGCTATGTAAATAATGTATTTCCACATAAAGGTTATATCTGGAATTATGGTGCCCTACCTCAAACATGGGAAGATCCAAACCATGTAGATGAAAATACTAAAGCTAAAGGAGATAACGATCCTATTGATGTGTGTGAAATAGGTTCGAAAATATGGCCTCCTGGATCAATAATACCTGTCAAAGTATTAGGCATATTGGCAATGATAGATGAAGGTGAAACTGACTGGAAAGTTATAGTTATAAATGCAGCTGATCCAATGGCTGATAAACTAAATGACATTCATGATGTGGATACTCATATGCCGGGACTTCTGAAGGCTACACGAGACTGGTTTAAGTACTACAAGGTTCCTACAGGAAAGCCCGAAAATACATTTGCCTTCAATGGAGAGTTCAAGAACA AAGAATTCGCCACAAAAATTATCTCCCAAACACATGAACAGTGGCAGAAACTGATATCTACCAAAGTTGAAGCTGGTTCTATCATACGAGCAAATGTTACTGTGAAAGGAAGTCCCTACATGGTATCAAAAGAAGATTTTCTCGATGCTTTGCAGAAGCACGACGCTTTTACACGCGGAAGTGAACCAACGG ATCAAGCGA TTGATCAATGGCATTTTTGCAACCCAAATATTTAATTCTGCTTCAATGGTCGACTATTATAATCATCGTTGTGAACTAATCATGGTCCACTCCACAAAAGAATAATTGC AATCAAAATCTACTCATCTTATAGTATTTAATAAAAAAAAACTCAGCGTATGACTGTTATTTACCTTTTTTGGTTGTAACCCT AATACTCGTCTGTATA GTCTATNGATATG TTTTTTAAAAAATTATTCCAG TAAAG TATACAAA ATACACA                                                                                        ]
[-] EMBL CD162906             [                                                                   ACAAGATGTTAAAAATAATAAACTGCGCTATGTAAATAATGTATTTCCACATAAAGGTTATATCTGGAATTATGGTGCCCTACCTCAAACATGGGAAGATCCAAACCATGTAGATGAAAATACTAAAACTAAAGGAGATAACGATCCTATTGATGTGTGTGAAATAGGTTCGAAAATATGGCCTTCCGGATCAATAATACCCGTCAAAGTATTAGGCATATTGGCAATGATAGATGAAGGTGAAACTGACTGGAAAGTTATAGTTATAAATGCAGCTGATCCAATGGCTGATAAACTAAATGACATTCATGATGTGGATACTCATATGCCGGGACTTCTGAAGGCTACACGAGACTGGTTTAAGTACTACAAGGTTCCTACAGGAAAGCCCGAAAATACATTTGCCTTCAATGGAGAGTTCAAGAACA AAGAATTCGCCACAAAAATTATCTCCCAAACACATGAACAGTGGCAGAAACTGATATCTACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD165111             [                                                                                                                                                                                        AAATACTAAAGCTAAAGGAGATAACGATCCTATTGATGTGTGTGAAATAGGTTCGAAAATATGGCCTCCTGGATCAATAATACCTGTCAAAGTATTAGGCATATTGGCAATGATAGATGAAGGTGAAACTGACTGGAAAGTTATAGTTATAAATGCAGCTGATCCAATGGCTGATAAACTAAATGACATTCATGATGTGGATACTCATATGCCGGGACTTCTGAAGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD181404             [                                                                                                                                                                                                                                                                                                                                                             tgaaGCTGATAAACTAAATGACATTCATGATGTGGATACTCATATGCCGGGACTTCTGAAGGCTACACGAGACTGGTTTAAGTACTACAAGGTTCCTACAGGAAAGCCCGAAAATACATATGCCTTCAATGGAGAGTTCAAGAACA AAGAATTCGCCACAAAAATTATCTCCCAAACACATGAACAGTGGCAGAAACTGATATCTACCAAAGTTGAAGCTGGTTCTATCATACGAGCAAATGTTACTGTGAAAGGAAGTCCCTACATGGTATCAAAAGAAGATTTTCTCGATGCTTTGCAGAAGCACGACGCTTTTACACGCGGAAGTGAACCAACGGNATC AGCGATTTGATC ATGGCATTTTTGCActc                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD145375             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ATNTGCCTCNAATGNAGAGTTCAAG ACANAAGATTTCG CACAAAAATTATCTCCCAAACACATGAACAGTGGCAGAAACTGATATCTACCANAGTTGAAGCTGGTTCTATCATACGAGCAAATGTTACTGTGAAAGGAAGTCCCTACATGGTATCAAAAGAAGATTTTCTCGATGCTTTGCAGAAGCACGACGCTTTTACACGCGGAAGTGAACCAACGG ATCAAGCGA TTGATCAATGGCATTTTTGCAACCCAAATATTTAATTCTGCTTCAATGGTCGACTATTATAATCATCGTTGTGAACTAATCATGGTCCACTCCACAAAAG ATAATTGCAAATCAAAATCTACTCATCTTATAGTATTTAATAAAAAAAAACTCAGCGTATGACTGTTATTTACCTTTTTTGGTTGTAACCCTAAATACTCGTCTGTATAGGTCTATTGATATGTTTTTTTAAAAAATTAGTTCAGTTAAAGTTATACAAATATACACATATGTTTGGGAATGAATTCTTCTTTTTCCCCCTTAAACAATTGAAGTATATAGGCGTAACCTAATTGACTAAATTGAATTTTATTTCT]
[-] EMBL CD142578             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGGTTCTATCATACGAGCAAATGTTACTGTGAAAGGAAGTCCCTACATGGTATCAAAAGAAGATTTTCTCGATGCTTTGCAGAAGCACGACGCTTTTACACGCGGAAGTGAACCAACGG ATCAAGCGA TTGATCAATGGCATTTTTGCAACCCAAATATTTAATTCTGCTTCAATGGTCGACTATTATAATCATCGTTGTGAACTAATCATGGTCCACTCCACAAAAG ATAATTGCAAATCAAAATCTACTCATCTTATAGTATTTAATAAAAAAAAACTCAGCGTATGACTGTTATTTACCTTTTTTGGTTGTAAC                                                                                                                                                                       ]




>consensus_8885#0
CGGAGCCAATATTCGGCACGAGGGCAAAAATGGAAATTTGCAAAGAAGAACTTATGAATC
CTATCAAACAAGATGTTAAAAATAATAAACTGCGCTATGTAAATAATGTATTTCCACATA
AAGGTTATATCTGGAATTATGGTGCCCTACCTCAAACATGGGAAGATCCAAACCATGTAG
ATGAAAATACTAAAGCTAAAGGAGATAACGATCCTATTGATGTGTGTGAAATAGGTTCGA
AAATATGGCCTCCTGGATCAATAATACCTGTCAAAGTATTAGGCATATTGGCAATGATAG
ATGAAGGTGAAACTGACTGGAAAGTTATAGTTATAAATGCAGCTGATCCAATGGCTGATA
AACTAAATGACATTCATGATGTGGATACTCATATGCCGGGACTTCTGAAGGCTACACGAG
ACTGGTTTAAGTACTACAAGGTTCCTACAGGAAAGCCCGAAAATACATTTGCCTTCAATG
GAGAGTTCAAGAACAAAGAATTCGCCACAAAAATTATCTCCCAAACACATGAACAGTGGC
AGAAACTGATATCTACCAAAGTTGAAGCTGGTTCTATCATACGAGCAAATGTTACTGTGA
AAGGAAGTCCCTACATGGTATCAAAAGAAGATTTTCTCGATGCTTTGCAGAAGCACGACG
CTTTTACACGCGGAAGTGAACCAACGGATCAAGCGATTGATCAATGGCATTTTTGCAACC
CAAATATTTAATTCTGCTTCAATGGTCGACTATTATAATCATCGTTGTGAACTAATCATG
GTCCACTCCACAAAAGATAATTGCAAATCAAAATCTACTCATCTTATAGTATTTAATAAA
AAAAAACTCAGCGTATGACTGTTATTTACCTTTTTTGGTTGTAACCCTAATACTCGTCTG
TATAGTCTATNGATATGTTTTTTAAAAAATTATTCCAGTAAAGTATACAAAATACACATA
TGTTTGGGAATGAATTCTTCTTTTTCCCCCTTAAACAATTGAAGTATATAGGCGTAACCT
AATTGACTAAATTGAATTTTATTTCT

consensusID : consensus_8885#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [CCTCGCTGGACAAATGCAAAAATGGAAATTTGCAAAGAAGAACTTATGAATCCTATCAAACAAGATGTTAAAAATAATAAACTGCGCTATGTAAATAATGTATTTCCACATAAAGGTTATATCTGGAATTATGGTGCCCTACCTCAAACATGGGAAGATCCAAACCATGTAGATGAAAATACTAAAGCTAAAGGAGATAACGATCCTATTGATGTGTGTGAAATAGGTTCGAAAAT]

[+] EMBL CD078192             [CCTCGCTGGACAAATGCAAAAATGGAAATTTGCAAAGAAGAACTTATGAATCCTATCAAACAAGATGTTAAAAATAATAAACTGCGCTATGTAAATAATGTATTTCCACATAAAGGTTATATCTGGAATTATGGTGCCCTACCTCAAACATGGGAAGATCCAAACCATGTAGATGAAAATACTAAAGCTAAAGGAGATAACGATCCTATTGATGTGTGTGAAATAGGTTCGAAAAT]




>consensus_8885#1
CCTCGCTGGACAAATGCAAAAATGGAAATTTGCAAAGAAGAACTTATGAATCCTATCAAA
CAAGATGTTAAAAATAATAAACTGCGCTATGTAAATAATGTATTTCCACATAAAGGTTAT
ATCTGGAATTATGGTGCCCTACCTCAAACATGGGAAGATCCAAACCATGTAGATGAAAAT
ACTAAAGCTAAAGGAGATAACGATCCTATTGATGTGTGTGAAATAGGTTCGAAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8885#0      CGGAGCCAATATTCGGCACGAGGGCAAAAATGGAAATTTGCAAAGAAGAACTTATGAATC 60
consensus_8885#1      --------CCTCGCTGGACAAATGCAAAAATGGAAATTTGCAAAGAAGAACTTATGAATC 52
                                   * * ** *  *************************************

consensus_8885#0      CTATCAAACAAGATGTTAAAAATAATAAACTGCGCTATGTAAATAATGTATTTCCACATA 120
consensus_8885#1      CTATCAAACAAGATGTTAAAAATAATAAACTGCGCTATGTAAATAATGTATTTCCACATA 112
                      ************************************************************

consensus_8885#0      AAGGTTATATCTGGAATTATGGTGCCCTACCTCAAACATGGGAAGATCCAAACCATGTAG 180
consensus_8885#1      AAGGTTATATCTGGAATTATGGTGCCCTACCTCAAACATGGGAAGATCCAAACCATGTAG 172
                      ************************************************************

consensus_8885#0      ATGAAAATACTAAAGCTAAAGGAGATAACGATCCTATTGATGTGTGTGAAATAGGTTCGA 240
consensus_8885#1      ATGAAAATACTAAAGCTAAAGGAGATAACGATCCTATTGATGTGTGTGAAATAGGTTCGA 232
                      ************************************************************

consensus_8885#0      AAATATGGCCTCCTGGATCAATAATACCTGTCAAAGTATTAGGCATATTGGCAATGATAG 300
consensus_8885#1      AAAT-------------------------------------------------------- 236
                      ****                                                        

consensus_8885#0      ATGAAGGTGAAACTGACTGGAAAGTTATAGTTATAAATGCAGCTGATCCAATGGCTGATA 360
consensus_8885#1      ------------------------------------------------------------
                                                                                  

consensus_8885#0      AACTAAATGACATTCATGATGTGGATACTCATATGCCGGGACTTCTGAAGGCTACACGAG 420
consensus_8885#1      ------------------------------------------------------------
                                                                                  

consensus_8885#0      ACTGGTTTAAGTACTACAAGGTTCCTACAGGAAAGCCCGAAAATACATTTGCCTTCAATG 480
consensus_8885#1      ------------------------------------------------------------
                                                                                  

consensus_8885#0      GAGAGTTCAAGAACAAAGAATTCGCCACAAAAATTATCTCCCAAACACATGAACAGTGGC 540
consensus_8885#1      ------------------------------------------------------------
                                                                                  

consensus_8885#0      AGAAACTGATATCTACCAAAGTTGAAGCTGGTTCTATCATACGAGCAAATGTTACTGTGA 600
consensus_8885#1      ------------------------------------------------------------
                                                                                  

consensus_8885#0      AAGGAAGTCCCTACATGGTATCAAAAGAAGATTTTCTCGATGCTTTGCAGAAGCACGACG 660
consensus_8885#1      ------------------------------------------------------------
                                                                                  

consensus_8885#0      CTTTTACACGCGGAAGTGAACCAACGGATCAAGCGATTGATCAATGGCATTTTTGCAACC 720
consensus_8885#1      ------------------------------------------------------------
                                                                                  

consensus_8885#0      CAAATATTTAATTCTGCTTCAATGGTCGACTATTATAATCATCGTTGTGAACTAATCATG 780
consensus_8885#1      ------------------------------------------------------------
                                                                                  

consensus_8885#0      GTCCACTCCACAAAAGATAATTGCAAATCAAAATCTACTCATCTTATAGTATTTAATAAA 840
consensus_8885#1      ------------------------------------------------------------
                                                                                  

consensus_8885#0      AAAAAACTCAGCGTATGACTGTTATTTACCTTTTTTGGTTGTAACCCTAATACTCGTCTG 900
consensus_8885#1      ------------------------------------------------------------
                                                                                  

consensus_8885#0      TATAGTCTATNGATATGTTTTTTAAAAAATTATTCCAGTAAAGTATACAAAATACACATA 960
consensus_8885#1      ------------------------------------------------------------
                                                                                  

consensus_8885#0      TGTTTGGGAATGAATTCTTCTTTTTCCCCCTTAAACAATTGAAGTATATAGGCGTAACCT 1020
consensus_8885#1      ------------------------------------------------------------
                                                                                  

consensus_8885#0      AATTGACTAAATTGAATTTTATTTCT 1046
consensus_8885#1      --------------------------