cluster # 8886

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Schistosoma mansoni
cluster # 8886 cluster # 8886 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8886#0 length = 224 sequences # 6

consensus_8886#1 length = 205 sequences # 1

consensusID : consensus_8886#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 224
fasta sequence

                              [CTATATAGTAGGGCGCGTGGATGCGTGCCTGTCACGCCCCGAAGTTTGTCGAAGTTTTATAGAGACAGAGAGTCGTTGAGTGGCTCTCTGTTTCTTTTTTTCGTATTAAACGAGGTTTGGAATATATATTATACTTTTGAATGCCTCTGTTCTGGAACAGGGGCGATTTTTGTTTTTGCCATTGGTAAAGTGCGTGAACATCGTGAGATTGAAGCTCGGCAGTC]

[+] EMBL CD124767             [CTATATAGTAGGGCGCGTGGATGCGTGCCTGTCACGCCCCGAAGTTTGTCGAAGTTTTATAGAGACAGAGAGTCGTTGAGTGGCTCTCTGTTTCTTTTTTTCGTATTAAACGAGGTTTGGAATATATATTATACTTTTGAATGCCTCTGTTCTGGAACAGGGGCGATTTTTGGTTTTGCCATTGGTAAAGTGCGTGAACATCGTGAGATTGAAGCTCGGCAGTC]
[+] EMBL CD124809             [CTATATAGTAGGGCGCGTGGATGCGTGCCTGTCACGCCCCGAAGTTTGTCGAAGTTTTATAGAGACAGAGAGTCGTTGAGTGGCTCTCTGTTTCTTTTTTTCGTATTAAACGAGGTTTGGAATATATATTATACTTTTGAATGCCTCTGTTCTGGAACAGGGGCGATTTTTGTTTTTGCCATTGGTAAAGTGCGTGAACATCGTGAG                 ]
[+] EMBL CD124576             [CTATATAGTAGGGCGCGTGGATGCGTGCCTGTCACGCCCCGAAGTTTGTCGAAGTTTTATAGAGACAGAGAGTCGTTGAGTGGCTCTCTGTTTCTTTTTTTCGTATTAAACGAGGTTTGGAATATATATTATACTTTTGAATGCCTCTGTTCTGGAACAGGGGCGATTTTTGTTTTTGCCATTGGTAAAGTGCGTGAACATCGTGAG                 ]
[+] EMBL CD124651             [CTATATAGTAGGGCGCGTGGATGCGTGCCTGTCACGCCCCGAAGTTTGTCGAAGTTTTATAGAGACAGAGAGTCGTTGAGTGGCTCTCTGTTTCTTTTTTTCGTATTAAACGAGGTTTGGAATATATATTATACTTTTGAATGCCTCTGTTCTGGAACAGGGGCGATTTTTGTTTTTGCCATTGGTAAAGTGCGTGAACATCGTGAG                 ]
[-] EMBL CD124625             [                                                        TTATAGAGACAGAGAGTCGTTGAGTGGCTCTCTGTTTCTTTTTTTCGTATTAAACGAGGTTTGGAATATATATTATACTTTTGAATGCCTCTGTTCTGGAACAGGGGCGATTTTTGTTTTTGCCATTGGTAAAGTGCGTGAACATCGTGAGA                ]
[-] EMBL CD124797             [                                                        TTATAGAGACAGAGAGTCGTTGAGTGGCTCTCTGTTTCTTTTTTTCGTATTAAACGAGGTTTGGAATATATATTATACTTTTGAATGCCTCTGTTCTGGAACAGGGGCGATTTTTGTTTTTGCCATTGGTAAAGTGCGTGAACATCGTGAGA                ]




>consensus_8886#0
CTATATAGTAGGGCGCGTGGATGCGTGCCTGTCACGCCCCGAAGTTTGTCGAAGTTTTAT
AGAGACAGAGAGTCGTTGAGTGGCTCTCTGTTTCTTTTTTTCGTATTAAACGAGGTTTGG
AATATATATTATACTTTTGAATGCCTCTGTTCTGGAACAGGGGCGATTTTTGTTTTTGCC
ATTGGTAAAGTGCGTGAACATCGTGAGATTGAAGCTCGGCAGTC

consensusID : consensus_8886#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 205
fasta sequence

                              [CTATATAGTAGGGCGCGTGGATGCGTGCCTGTCACGCCCCGAAGTTTGTCGAAGTTTATAAAGCCAGAGAGTCGTTGAGTGGCTCTCTGTTTCTTTTTTCGATTAACAGGAGGTTGGAAAATTTTTTACTCTTATCTCGTGCGGGCGATGAAGCGGGGGGCNAATTTTTGTTTTTGCCATTGGTAAAGTGCGTGAACATCGGAAG]

[+] EMBL CD124640             [CTATATAGTAGGGCGCGTGGATGCGTGCCTGTCACGCCCCGAAGTTTGTCGAAGTTTATAAAGCCAGAGAGTCGTTGAGTGGCTCTCTGTTTCTTTTTTCGATTAACAGGAGGTTGGAAAATTTTTTACTCTTATCTCGTGCGGGCGATGAAGCGGGGGGCNAATTTTTGTTTTTGCCATTGGTAAAGTGCGTGAACATCGGAAG]




>consensus_8886#1
CTATATAGTAGGGCGCGTGGATGCGTGCCTGTCACGCCCCGAAGTTTGTCGAAGTTTATA
AAGCCAGAGAGTCGTTGAGTGGCTCTCTGTTTCTTTTTTCGATTAACAGGAGGTTGGAAA
ATTTTTTACTCTTATCTCGTGCGGGCGATGAAGCGGGGGGCNAATTTTTGTTTTTGCCAT
TGGTAAAGTGCGTGAACATCGGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8886#0      CTATATAGTAGGGCGCGTGGATGCGTGCCTGTCACGCCCCGAAGTTTGTCGAAGTTTTAT 60
consensus_8886#1      CTATATAGTAGGGCGCGTGGATGCGTGCCTGTCACGCCCCGAAGTTTGTCGAAGTTT-AT 59
                      ********************************************************* **

consensus_8886#0      AGAGACAGAGAGTCGTTGAGTGGCTCTCTGTTTCTTTTTTTCGTATTAAACGAGGTTTGG 120
consensus_8886#1      AAAGCCAGAGAGTCGTTGAGTGGCTCTCTGTTTCTTTTTTC--GATTAACAGGAGGTTGG 117
                      * ** ***********************************    *****  *  * ****

consensus_8886#0      AATATATATTATACTT-TTGAATGCCTCTGTTCTGGAACAGGGGCGATTTTTGTTTTTGC 179
consensus_8886#1      AAAATTTTTTACTCTTATCTCGTGCGGGCGATGAAGCGGGGGGCNAATTTTTGTTTTTGC 177
                      ** ** * ***  *** *    ***    * *   *    ***   **************

consensus_8886#0      CATTGGTAAAGTGCGTGAACATCGTGAGATTGAAGCTCGGCAGTC 224
consensus_8886#1      CATTGGTAAAGTGCGTGAACATCGGAAG----------------- 205
                      ************************  **