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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8890#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 536 fasta sequence
[AGGATTAGTAGTTGATCCTAATGCATTTGTATAAGCATTGCTAAGTGTAGACGATGCATTCATATTAATCTTCTCAGATCGTGGACGACGAGAATTAATATTCTGATTATTACTTCCATTTATACCTGATGAATTTCCACTTGTAATAGTAGGATTTACATGTGATGTTGTTAACAATAGTGTGAACCGTGCTAGTGCTTGTACATAGGCATCTCGTTCTAATTCCATATGAAATATACATGCTATACGTATGGCATATCGAATACCTTCTAAGCACAGATGATTTACATCCATTGCGTCAGAATCCTGTAATCCAACACTGAATGCGGCCAGAAACGGTGTCCATGCTAGTTTGAACATTGGACGAACATGTTCACAATGGGTTGCACAGGTGAATTCAGATGAACCAGATATTACAGAATCTCCTAAAATCTCTCCATCTCCTGTTTGTCGTCGGTTATCTAATTTAGGGCTGATTTCAGTTGATGTAGAAATTTTTGTAAGTTTGGTAACATTATCATCAGCTTTCAATTTTA]
[+] EMBL CD147151 [AGGATTAGTAGTTGATCCTAATGCATTTGTATAAGCATTGCTAAGTGTAGACGATGCATTCGTATTAATCTTCTCAGATCGTGGACGACGAGAATTAATATTCTGATTATTACTTCCATTTATACCTGATGAATTTCCACTTGTAATAGTAGGATTTACATGTGATGTTGTTAACAATAGTGTGAACCGTGCTAGTGCTTGTACACAGGCATCTCGTTCTAATTCCATATGAAATATACATGCTATACGTATGGCATATCGAATACCTTCTAAGCACAGATGATTTACATCCATTGCGTCAGAATCCTGTAATCCAACACTGAATGCGGCCAGAAACGGTGTCCATGCTAGTTTGAACATTGGACGAACATGTTCACAATGGGTTGCACAGGTGAATTCAGATGAACCAGATATTACAGAATCTCCTAAAATCTCTCCATCTCCTGTTTGTCGTCGGTTATCTAATTTAGGGCTGATTTCAGTTGATGTAGAAATTTTTGTAAGTTTGGTAACATTATCATCAGCTTTCAATTTTA]
[-] EMBL CD064103 [ CATTCATATTAATCTTCTCAGATCGTGGACGACGAGAATTAATATTCTGATTATTACCTCCATTTATACCTGATGAATTTCCACTTGTAATAGTAGGATTTACATGTGATGTTGTTAACAATAGTGTGAACCGTGCTAGTGCTTGTACATAGGCATCTCGTTCTAATTCCATATGAAATATACATGCTATACGTATGGCATATCGAATACCTTCTAAGCACAGATGATTTACATCCATTGCGTCAG ATCCTGTA ]
[+] EMBL CD166623 [ TCATATTAATCTTCTCAGATCGTGGACGACGAGAATTAATATTCTGATTATTACTTCCATTTATACCTGATGAATTTCCACTTGTAATAGTAGGATTTACATGTGATGTTGTTAACAATAGTGTGAACCGTGCTAGTGCTTGTACATAGGCATCTCGTTCTAATTCCATATGAAATATACATGCTATACGTATGGCATATCGAATACCTTCTAAGCACAGATGATTTACATCCATTGCGTCAGAATCCTGT ]
[+] EMBL CD114624 [ TCTTCTCAGATCGTGGACGACGAGAATTAATATTCTGATTATTACTTCCATTTATACCTGATGAATTTCCACTTGTAATAGTAGGATTTACATGTGATGTTGTTAACAATAGTGTGAACCGTGCTAGTGCTTGTACATAGGCATCTCGTTCTAATTCCATATGAAATATACATGCTATACGTATGGCATATCGAATACCTTCTAAGCACAGATGATTTACATCCATTGCGTCAGAATCCTGTAATCCAACACTGAATGCGGCCAGAAACGGTGTCCATGCTAGTTTG ]
[-] EMBL CD114660 [ CTTCTCAGATCGTGGACGACGAGAATTAATATTCTGATTATTACTTCCATTTATACCTGATGAATTTCCACTTGTAATAGTAGGATTTACATGTGATGTTGTTAACAATAGTGTGAACCGTGCTAGTGCTTGTACATAGGCATCTCGTTCTAATTCCATATGAAATATACATGCTATACGTATGGCATATCGAATACCTTCTAAGCACAGATGATTCACATCCATTGCGTCAGAATCCTGTAATCCAACACTGAATGCGGCCAGAAACGGTGTCCATGCTAGTTTGA ]
[+] EMBL CD166775 [ TCTCAGATCGTGGACGACGAGAATTAATATTCTGATTATTACTTCCATTTATACCTGATGAATTTCCACTTGTAATAGTAGGATTTACATGTGATGTTGTTAACAATAGTGTGAACCGTGCTAGTGCTTGTACATAGGCATCTCGTTCTAATTCCATATGAAATATACATGCTATACGTATGGCATATCGAATACCTTCTAAGCACAGATGATTTACATCCATTGCGTCAGAATCCTGT ]
consensusID : consensus_8890#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence
[ACCTTCGTATCGGACATTCATATTAATCTTCTCAGATCGTGACGACGAGAATTAATATTCTGATTATTACTTCCATTTATACCTGATGAATTTCCACTTGTAATAGTAGGATTTACATGTGATGTTGTTAACAATTGTGTGCACCGTGCTAGTGCTTGTACATAGGCATCTCGTTCTAATTCCATATGAAATATACATGCTATACGTATGGCATATCGAATACCTTCTAAGCACAGATGATTTACATCCATTGCGTCAGAATCCTGT]
[+] EMBL CD166662 [ACCTTCGTATCGGACATTCATATTAATCTTCTCAGATCGTGACGACGAGAATTAATATTCTGATTATTACTTCCATTTATACCTGATGAATTTCCACTTGTAATAGTAGGATTTACATGTGATGTTGTTAACAATTGTGTGCACCGTGCTAGTGCTTGTACATAGGCATCTCGTTCTAATTCCATATGAAATATACATGCTATACGTATGGCATATCGAATACCTTCTAAGCACAGATGATTTACATCCATTGCGTCAGAATCCTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8890#0 AGGATTAGTAGTTGATCCTAATGCATTTGTATAAGCATTGCTAAGTGTAGACGATGCATT 60
consensus_8890#1 ------------------------------------------ACCTTCGTATCGGACATT 18
* * * ****
consensus_8890#0 CATATTAATCTTCTCAGATCGTGGACGACGAGAATTAATATTCTGATTATTACTTCCATT 120
consensus_8890#1 CATATTAATCTTCTCAGATCGTG-ACGACGAGAATTAATATTCTGATTATTACTTCCATT 77
*********************** ************************************
consensus_8890#0 TATACCTGATGAATTTCCACTTGTAATAGTAGGATTTACATGTGATGTTGTTAACAATAG 180
consensus_8890#1 TATACCTGATGAATTTCCACTTGTAATAGTAGGATTTACATGTGATGTTGTTAACAATTG 137
********************************************************** *
consensus_8890#0 TGTGAACCGTGCTAGTGCTTGTACATAGGCATCTCGTTCTAATTCCATATGAAATATACA 240
consensus_8890#1 TGTGCACCGTGCTAGTGCTTGTACATAGGCATCTCGTTCTAATTCCATATGAAATATACA 197
**** *******************************************************
consensus_8890#0 TGCTATACGTATGGCATATCGAATACCTTCTAAGCACAGATGATTTACATCCATTGCGTC 300
consensus_8890#1 TGCTATACGTATGGCATATCGAATACCTTCTAAGCACAGATGATTTACATCCATTGCGTC 257
************************************************************
consensus_8890#0 AGAATCCTGTAATCCAACACTGAATGCGGCCAGAAACGGTGTCCATGCTAGTTTGAACAT 360
consensus_8890#1 AGAATCCTGT-------------------------------------------------- 267
**********
consensus_8890#0 TGGACGAACATGTTCACAATGGGTTGCACAGGTGAATTCAGATGAACCAGATATTACAGA 420
consensus_8890#1 ------------------------------------------------------------
consensus_8890#0 ATCTCCTAAAATCTCTCCATCTCCTGTTTGTCGTCGGTTATCTAATTTAGGGCTGATTTC 480
consensus_8890#1 ------------------------------------------------------------
consensus_8890#0 AGTTGATGTAGAAATTTTTGTAAGTTTGGTAACATTATCATCAGCTTTCAATTTTA 536
consensus_8890#1 --------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||