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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8891#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 953 fasta sequence
[ATTATTTCAAATGATATAAAACTTGGTACAACATCATCGATGATAAATTCACCAACACAGCATCATACGTTACATGATATGTTTAACAATGCTTCTGTTATTCTTGTCACTGGTCCTAATATGGGTGGAAAATCAACTTTAATGAGACAAGCTGCTTTATTAGTTATATTAGCCCATTTAGGTTGTCGTATTCCGGCCAAGTCATGCAAACTAACTCCTGTGGATCGGATATTTTCACGCCTTGGTGCTAGTGACAGAATGCTTTCAGGTGAAAGTACGTTTTTGGTGGAGTTATCAGAGACGGCATCTATTTTGCATCATATCACTCCTCATAGTCTTGTTTTGATGGATGAATTAGGTCGTGGAACTTCCACTCACGACGGATCAGCCCTAGCAGGTGCAGTTGTGTCTTACTTAGCTAAACCAAATGGAAGGTTTTTCAATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTATCACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAATCACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCA-GAGTCAACAAATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGCTATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTATCCGACTTGGTTTAGCTAAAGCA-AAGGAGTTCGAAAAAACCACTGCAACGTTTGCATGTGTGAGGAGATTATTGCACGGGCCGGCTACAGTGGATGATCTACGACACTGGAATCCTAAACTAATAGCATTATTATCACATANAAAACAATACGCTTANAGATCATATTCATCCAGCTCTTACACTACACATGCTAGATTTCATGATC-ATATATATCTACTTACTTCGTTCAAGGAACTACCCTAAAT]
[+] EMBL CD083762 [ATTATTTCAAATGATATAAAACTTGGTACAACATCATCGATGATAAATTCACCAACACAGCATCATACGTTACATGATATGTTTAACAATGCTTCTGTTATTCTTGTCACTGGTCCTAATATGGGTGGAAAATCAACTTTAATGAGACAAGCTGCTTTATTAGTTATATTAGCCCATTTAGGTTGTCGTATTCCGGCCAAGTCATGCAAACTAACTCCTGTGGATCGGATATTTTCACGCCTTGGTGCTAGTGACAGAATGCTTTCAGGTGAAAGTACGTTTTTGGTGGAGTTATCAGAGACGGCATCTATTTTGCATCATATCACTCCTCATAGTCTTGTTTTGATGGATGAATTAGGTCGTGGAACTTCCACTCACGACGGATCAGCCCTAGCAGGTGCAGTTGTGTCTTACTTAGCTNAACCAAATGGAAGGTTTTTCAATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTATCACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAATC ]
[+] EMBL CD082869 [ CAAGCTGCTTTATTAGTTATATTAGCCCATTTAGGTTGTCGTATTCCGGCCAAGTCATGCAAACTAACTCCTGTGGATCGGATATTTTCACGCCTTGGTGCTAGTGACAGAATGCTTTCAGGTGAAAGTACGTTTTTGGTGGAGTTATCAGAGACGGCATCTATTTTGCATCATATCACTCCTCATAGTCTTGTTTTGATGGATGAATTAGGTCGTGGAACTTCCACTCACGACGGATCAGCCCTAGCAGGTGCAGTTGTGTCTTACTTAGCTAAACCAAATGGAAGGTTTTTCAATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTATCACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAATCACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCA GAGTCAACAAATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGCTATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTATCCGACTTGGTTTAGCTAAAGCANAGGGAGT ]
[+] EMBL CD080627 [ ATTAACCCATTTAGGTTGTCGTATTCCGGCCAAGTCATGCAAACTAACTCCTGTGGATCGGCTATTTTCACGCCTTGGTGCTACTGACAGAATGCTTTCAGGTGAAAGTACGTTTTTGGTGGATTTATCAGAGACGGCATCTATTTTGCATCATATCACTCCTCATACTCTTGCTTTGATGGATGAATTAAGTCGTGGAACTTCCACTCACGACCGATCATCCCTAGCAAGGGCAGGTGCGTCTTACTTAGCTAAACCAAATGGACTGTTTTTCAATGGCTCTGGCCCTATAACTTTGTTTTCAGCGCACTATCACAGCTTGCTATATCATGCTGCTAACTAATACCGATCTACTTCCGATGAAGATATTAATCACTTATGTATTGGCCTGGGTCACATGGCTTGCATGGATGAAGCAGAATCAGGAGTCAACAAATGGTTTAGAAAATATCACATTTTTGCATAAATATATTCCTGCTGCATGTCCGAAAAGCTATGGGTCCAATGCCTCTCGTTTAGCTATGCTACCTGATAAGGTTATCCGACTTGGTTTAGCTAAAGCA AAGGAGTTCGAAAAAACCACTGCGACGTTAGCATGTGTGATGAGATTATTGCACGGGCCGGCTACAGTGGATGATCTACGACACTGGAATCCTAAACTAATAGCATTATTATCACATANAAAACAATACGCTTANAGATCATATTCATCCAGCTCTTACACTACACATGCTAGATTTCATGATC ATATATATCTACTTACTTCGTTCAAGGAACTACCCTAAAT]
[-] EMBL CD076455 [ ATGGATGAATTAGGTCGTGGAACTTCCACTCACGACGGATCAGCCCTAGCAGGTGCAGTTGTGTCTTACTTAGCTAAACCAAATGGAAGGTTTTTCAATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTATCACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAATCACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCA GAGTCAACAAATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGCTATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTATCCGACTTGGTTTAGCTAAAGCA AAGGAGTTCGAAAAAACCACTGCAACGTTTGCATGTGTGAGGAGATTATTGCAAGGGCCGGTTACAGTGGAGGATCTACGACAATGGAATTTTAAATTAAAAGCATTTTTATAACATAAAAAACAATAC CTTAAAAATCATATTCATCCAGCTTTTAAACTACACATCCTAGATTTCATTATCAATATATATCTACTTACTTCTTTCtt ]
[-] EMBL CD136225 [ CTAAACCAAATGGAA GTTTTTCAATGGCTCTGGCCCTAGAACTTTTTTTTCAACGCACTATCACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAATCACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCA GAGTCAACAAATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGCTATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTATCCGACTTGGTTTAGCTAAAGCA AAGGAGTTCGAAAAAACCACTGCAACGTTTGCATGTGTGAGGAGAT ]
consensusID : consensus_8891#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence
[GTGGAGTTATCAGAGACGGCATCTATTNTGCATCATATCACTCCTCATAGTCTTGTTNTGATGGATGAATTAGGTCGTGGAACTTCCACTCACGACGGATCAGCCCTAGCAGGTGCAGTTGTGTCTTACTTAGCTAAACCAAATGGAAGGTTTTTCAATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTATCACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAATCACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCAGAGTCAACAAATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGCTATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTAGAGTTTCATGAGTAAACTATGTACTGTTTTGACAATGATTTATCTGTGTGCATCTTTTTTGTCTTTTTCTCTATTATCAATATCTTATTACGTTAATAGTGAATTTGAGTAGCCAATTTGATTACCGATATCACTATCCATAAACTGTTTGTTTATTTGAGACCAGACATTTTTTCATGGATTTCCACATAGTTTTTCTTCATAGT]
[-] EMBL CD129877 [GTGGAGTTATCAGAGACGGCATCTATTNTGCATCATATCACTCCTCATAGTCTTGTTNTGATGGATGAATTAGGTCGTGGAACTTCCACTCACGACGGATCAGCCCTAGCAGGTGCAGTTGTGTCTTACTTAGCTAAACCAAATGGAAGGTTTTTCAATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTATCACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAATCACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCAGAGTCAACAAATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGCTATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTAGAGTTTCATGAGTAAACTATGTACTGTTTTGACAATGATTTATCTGTGTGCATCTTTTTTGTCTTTTTCTCTATTATCAATATCTTATTACGTTAATAGTGAATTTGAGTAGCCAATTTGATTACCGATATCACTATCCATAAACTGTTTGTTTATTTGAGACCAGACATTTTTTCATGGATTTCCACATAGTTTTTCTTCATAGT]
consensusID : consensus_8891#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence
[AGGTAGGTATTGGAAGGTTTTTAATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTATCACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAATCACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCAGAGTCAACAAATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGCTATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTATCCGACTTGGTTTAGCTAAAGCAAAGGAGTTCGAAAAAACCACTGCAACGTTTGCATGTGTGAGGAGATTATTGCAAGGGCCGGTTACAGTGGAGGATCTACGACAATGGAATTCTAAATTAAAAGCATTTTTATAACATAAAAAACAATACCTTAAAAATCATATTCATCCAGCTTTTAAACTACACATCCTAGATTTCATTATCAATATATATCTACTTACTTCTTTCTTTCCCTCATTAAATAGTTCATGTTCTTTTTACTTAAGGAAACTGAATTACTTACACACCTAGTGGTTCGAATACATTATAGTAGGAGGAAAATGATCTG]
[+] EMBL CD065384 [AGGTAGGTATTGGAAGGTTTTTAATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTATCACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAATCACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCAGAGTCAACAAATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGCTATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTATCCGACTTGGTTTAGCTAAAGCAAAGGAGTTCGAAAAAACCACTGCAACGTTTGCATGTGTGAGGAGATTATTGCAAGGGCCGGTTACAGTGGAGGATCTACGACAATGGAATTCTAAATTAAAAGCATTTTTATAACATAAAAAACAATACCTTAAAAATCATATTCATCCAGCTTTTAAACTACACATCCTAGATTTCATTATCAATATATATCTACTTACTTCTTTCTTTCCCTCATTAAATAGTTCATGTTCTTTTTACTTAAGGAAACTGAATTACTTACACACCTAGTGGTTCGAATACATTATAGTAGGAGGAAAATGATCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8891#0 ATTATTTCAAATGATATAAAACTTGGTACAACATCATCGATGATAAATTCACCAACACAG 60
consensus_8891#2 ------------------------------------------------------------
consensus_8891#1 ------------------------------------------------------------
consensus_8891#0 CATCATACGTTACATGATATGTTTAACAATGCTTCTGTTATTCTTGTCACTGGTCCTAAT 120
consensus_8891#2 ------------------------------------------------------------
consensus_8891#1 ------------------------------------------------------------
consensus_8891#0 ATGGGTGGAAAATCAACTTTAATGAGACAAGCTGCTTTATTAGTTATATTAGCCCATTTA 180
consensus_8891#2 ------------------------------------------------------------
consensus_8891#1 ------------------------------------------------------------
consensus_8891#0 GGTTGTCGTATTCCGGCCAAGTCATGCAAACTAACTCCTGTGGATCGGATATTTTCACGC 240
consensus_8891#2 ------------------------------------------------------------
consensus_8891#1 ------------------------------------------------------------
consensus_8891#0 CTTGGTGCTAGTGACAGAATGCTTTCAGGTGAAAGTACGTTTTTGGTGGAGTTATCAGAG 300
consensus_8891#2 ------------------------------------------------------------
consensus_8891#1 ---------------------------------------------GTGGAGTTATCAGAG 15
consensus_8891#0 ACGGCATCTATTTTGCATCATATCACTCCTCATAGTCTTGTTTTGATGGATGAATTAGGT 360
consensus_8891#2 ------------------------------------------------------------
consensus_8891#1 ACGGCATCTATTNTGCATCATATCACTCCTCATAGTCTTGTTNTGATGGATGAATTAGGT 75
consensus_8891#0 CGTGGAACTTCCACTCACGACGGATCAGCCCTAGCAGGTGCAGTTGTGTCTTACTTAGCT 420
consensus_8891#2 --------------------------------------------------------AGGT 4
consensus_8891#1 CGTGGAACTTCCACTCACGACGGATCAGCCCTAGCAGGTGCAGTTGTGTCTTACTTAGCT 135
** *
consensus_8891#0 AAACCAAATGGAAGGTTTTTCAATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTAT 480
consensus_8891#2 AGGT--ATTGGAAGGTTTTT-AATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTAT 61
consensus_8891#1 AAACCAAATGGAAGGTTTTTCAATGGCTCTGGCCCTAGAACTTTGTTTTCAACGCACTAT 195
* * ************ ***************************************
consensus_8891#0 CACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAAT 540
consensus_8891#2 CACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAAT 121
consensus_8891#1 CACAGCTTGGTAGATCAAGTTGCTAACAAAGACCGATCTACTTCCGATGAAGATATAAAT 255
************************************************************
consensus_8891#0 CACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCAGAGTCAACA 600
consensus_8891#2 CACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCAGAGTCAACA 181
consensus_8891#1 CACTTATGTATTGGCCTGGGTCACATGGCTTGTATGGTTGAAGCAGAATCAGAGTCAACA 315
************************************************************
consensus_8891#0 AATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGC 660
consensus_8891#2 AATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGC 241
consensus_8891#1 AATGGTTTAGAAAATATCACATTTTTGTATAAATTTATTCCTGGTGCATGTCCGAAAAGC 375
************************************************************
consensus_8891#0 TATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTATCCGACTTGGTTTA 720
consensus_8891#2 TATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTATCCGACTTGGTTTA 301
consensus_8891#1 TATGGTTTCAATGCAGCTCGTTTAGCTATGCTACCTGATAAGGTTA---GAGTTTCATGA 432
********************************************** ** ** * *
consensus_8891#0 GCTAAAGCAAAGGAGTTCGAAAAAACCACTGCAACGTTTGCATGTGTGAGGAGATTATTG 780
consensus_8891#2 GCTAAAGCAAAGGAGTTCGAAAAAACCACTGCAACGTTTGCATGTGTGAGGAGATTATTG 361
consensus_8891#1 G-TAAACTATGTACTGTTTTGACAATGATTTATCTGTGTGCATCTTTTTTGTCTTTTTCT 491
* **** * * * ** * * ** ***** * * * ** *
consensus_8891#0 CACGGGCCGGCTACAGTGGATGATCTACGACACTGGAATCCTAAACTAATAGCATTATTA 840
consensus_8891#2 CAAGGGCCGGTTACAGTGGAGGATCTACGACAATGGAATTCTAAATTAAAAGCATTTTTA 421
consensus_8891#1 CTATTATCAA-TATCTTA------TTACGTTAATAGTGAATTTGAGTAGC--CAATTTGA 542
* * ** * **** * * * * * ** ** * * *
consensus_8891#0 TCACATANAAAACAATACGCTTANAGATCATATTCATCCAGCTCTTACACTACACATGCT 900
consensus_8891#2 TAACATAAAAAACAATAC-CTTAAAAATCATATTCATCCAGCTTTTAAACTACACATCCT 480
consensus_8891#1 TTACCGATATCACTATCC----ATAAAC--TGTTTGTTTA--TTTGAGACCAGACATTTT 594
* ** * * ** ** * * * * * ** * * * * * ** * **** *
consensus_8891#0 AGATTTCATGATCA-TATATATCTACTTACTTCGTTCAAGGAACTACCCTAAAT------ 953
consensus_8891#2 AGATTTCATTATCAATATATATCTACTTACTTCTTTCTTT--CCCTCATTAAATAGTTCA 538
consensus_8891#1 TTCATGGATTTCCA-CATAGTTTTTCTTCATAGT-------------------------- 627
* ** ** *** * * *** *
consensus_8891#0 ------------------------------------------------------------
consensus_8891#2 TGTTCTTTTTACTTAAGGAAACTGAATTACTTACACACCTAGTGGTTCGAATACATTATA 598
consensus_8891#1 ------------------------------------------------------------
consensus_8891#0 -------------------
consensus_8891#2 GTAGGAGGAAAATGATCTG 617
consensus_8891#1 -------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||